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  1. Article ; Online: A multiscale framework for defining homeostasis in distal vascular trees: applications to the pulmonary circulation.

    Gharahi, Hamidreza / Filonova, Vasilina / Mullagura, Haritha N / Nama, Nitesh / Baek, Seungik / Figueroa, C Alberto

    Biomechanics and modeling in mechanobiology

    2023  Volume 22, Issue 3, Page(s) 971–986

    Abstract: Pulmonary arteries constitute a low-pressure network of vessels, often characterized as a bifurcating tree with heterogeneous vessel mechanics. Understanding the vascular complexity and establishing homeostasis is important to study diseases such as ... ...

    Abstract Pulmonary arteries constitute a low-pressure network of vessels, often characterized as a bifurcating tree with heterogeneous vessel mechanics. Understanding the vascular complexity and establishing homeostasis is important to study diseases such as pulmonary arterial hypertension (PAH). The onset and early progression of PAH can be traced to changes in the morphometry and structure of the distal vasculature. Coupling hemodynamics with vessel wall growth and remodeling (G&R) is crucial for understanding pathology at distal vasculature. Accordingly, the goal of this study is to provide a multiscale modeling framework that embeds the essential features of arterial wall constituents coupled with the hemodynamics within an arterial network characterized by an extension of Murray's law. This framework will be used to establish the homeostatic baseline characteristics of a pulmonary arterial tree, including important parameters such as vessel radius, wall thickness and shear stress. To define the vascular homeostasis and hemodynamics in the tree, we consider two timescales: a cardiac cycle and a longer period of vascular adaptations. An iterative homeostatic optimization, which integrates a metabolic cost function minimization, the stress equilibrium, and hemodynamics, is performed at the slow timescale. In the fast timescale, the pulsatile blood flow dynamics is described by a Womersley's deformable wall analytical solution. Illustrative examples for symmetric and asymmetric trees are presented that provide baseline characteristics for the normal pulmonary arterial vasculature. The results are compared with diverse literature data on morphometry, structure, and mechanics of pulmonary arteries. The developed framework demonstrates a potential for advanced parametric studies and future G&R and hemodynamics modeling of PAH.
    MeSH term(s) Humans ; Pulmonary Circulation ; Hypertension, Pulmonary ; Hemodynamics ; Pulmonary Artery ; Homeostasis
    Language English
    Publishing date 2023-03-14
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 2093052-5
    ISSN 1617-7940 ; 1617-7959
    ISSN (online) 1617-7940
    ISSN 1617-7959
    DOI 10.1007/s10237-023-01693-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Verification of the coupled-momentum method with Womersley's Deformable Wall analytical solution.

    Filonova, Vasilina / Arthurs, Christopher J / Vignon-Clementel, Irene E / Figueroa, C Alberto

    International journal for numerical methods in biomedical engineering

    2019  Volume 36, Issue 2, Page(s) e3266

    Abstract: In this paper, we perform a verification study of the Coupled-Momentum Method (CMM), a 3D fluid-structure interaction (FSI) model which uses a thin linear elastic membrane and linear kinematics to describe the mechanical behavior of the vessel wall. The ... ...

    Abstract In this paper, we perform a verification study of the Coupled-Momentum Method (CMM), a 3D fluid-structure interaction (FSI) model which uses a thin linear elastic membrane and linear kinematics to describe the mechanical behavior of the vessel wall. The verification of this model is done using Womersley's deformable wall analytical solution for pulsatile flow in a semi-infinite cylindrical vessel. This solution is, under certain premises, the analytical solution of the CMM and can thus be used for model verification. For the numerical solution, we employ an impedance boundary condition to define a reflection-free outflow boundary condition and thus mimic the physics of the analytical solution, which is defined on a semi-infinite domain. We first provide a rigorous derivation of Womersley's deformable wall theory via scale analysis. We then illustrate different characteristics of the analytical solution such as space-time wave periodicity and attenuation. Finally, we present the verification tests comparing the CMM with Womersley's theory.
    MeSH term(s) Algorithms ; Animals ; Blood Circulation/physiology ; Blood Flow Velocity/physiology ; Carotid Arteries/physiology ; Humans ; Pulsatile Flow/physiology
    Language English
    Publishing date 2019-12-21
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 2540968-2
    ISSN 2040-7947 ; 2040-7939
    ISSN (online) 2040-7947
    ISSN 2040-7939
    DOI 10.1002/cnm.3266
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Book ; Online: A Multiscale Framework for Defining Homeostasis in Distal Vascular Trees

    Filonova, Vasilina / Gharahi, Hamidreza / Nama, Nitesh / Baek, Seungik / Figueroa, C. Alberto

    Applications to the Pulmonary Circulation

    2020  

    Abstract: Coupling hemodynamics with vessel wall growth and remodeling (G&R) is crucial for understanding pathology at distal vasculature to study progression of incurable vascular diseases, such as pulmonary arterial hypertension. The present study is the first ... ...

    Abstract Coupling hemodynamics with vessel wall growth and remodeling (G&R) is crucial for understanding pathology at distal vasculature to study progression of incurable vascular diseases, such as pulmonary arterial hypertension. The present study is the first modeling attempt that focuses on defining homeostatic baseline values in distal pulmonary vascular bed via, a so-called, homeostatic optimization. To define the vascular homeostasis and total hemodynamics in the vascular tree, we consider two time-scales: a cardiac cycle and a longer period of vascular adaptations. An iterative homeostatic optimization is performed at the slow-time scale and incorporates: an extended Murray's law, wall metabolic cost function, stress equilibrium, and hemodynamics. The pulmonary arterial network of small vessels is represented by a fractal bifurcating tree. The pulsatile blood flow is described by a Womersley's deformable wall analytical solution. A vessel wall mechanical response is described by the constrained mixture theory for an orthotropic membrane and then linearized around mean pressure. Wall material parameters are characterized by using available porcine pulmonary artery experiments and human data from literature. Illustrative examples for symmetric and asymmetric fractal trees are presented to provide homeostatic values in normal subjects. We also outline the key ideas for the derivation of a temporal multiscale formalism to justify the proposed one-way coupled system of governing equations and identify the inherent assumptions. The developed framework demonstrates a potential for advanced parametric studies and future G&R and hemodynamics modeling in pulmonary arterial hypertension.

    Comment: 35 pages, 16 figures
    Keywords Physics - Biological Physics
    Subject code 610
    Publishing date 2020-01-14
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article ; Online: CRIMSON: An open-source software framework for cardiovascular integrated modelling and simulation.

    Arthurs, Christopher J / Khlebnikov, Rostislav / Melville, Alex / Marčan, Marija / Gomez, Alberto / Dillon-Murphy, Desmond / Cuomo, Federica / Silva Vieira, Miguel / Schollenberger, Jonas / Lynch, Sabrina R / Tossas-Betancourt, Christopher / Iyer, Kritika / Hopper, Sara / Livingston, Elizabeth / Youssefi, Pouya / Noorani, Alia / Ben Ahmed, Sabrina / Nauta, Foeke J H / van Bakel, Theodorus M J /
    Ahmed, Yunus / van Bakel, Petrus A J / Mynard, Jonathan / Di Achille, Paolo / Gharahi, Hamid / Lau, Kevin D / Filonova, Vasilina / Aguirre, Miquel / Nama, Nitesh / Xiao, Nan / Baek, Seungik / Garikipati, Krishna / Sahni, Onkar / Nordsletten, David / Figueroa, C Alberto

    PLoS computational biology

    2021  Volume 17, Issue 5, Page(s) e1008881

    Abstract: In this work, we describe the CRIMSON (CardiovasculaR Integrated Modelling and SimulatiON) software environment. CRIMSON provides a powerful, customizable and user-friendly system for performing three-dimensional and reduced-order computational ... ...

    Abstract In this work, we describe the CRIMSON (CardiovasculaR Integrated Modelling and SimulatiON) software environment. CRIMSON provides a powerful, customizable and user-friendly system for performing three-dimensional and reduced-order computational haemodynamics studies via a pipeline which involves: 1) segmenting vascular structures from medical images; 2) constructing analytic arterial and venous geometric models; 3) performing finite element mesh generation; 4) designing, and 5) applying boundary conditions; 6) running incompressible Navier-Stokes simulations of blood flow with fluid-structure interaction capabilities; and 7) post-processing and visualizing the results, including velocity, pressure and wall shear stress fields. A key aim of CRIMSON is to create a software environment that makes powerful computational haemodynamics tools accessible to a wide audience, including clinicians and students, both within our research laboratories and throughout the community. The overall philosophy is to leverage best-in-class open source standards for medical image processing, parallel flow computation, geometric solid modelling, data assimilation, and mesh generation. It is actively used by researchers in Europe, North and South America, Asia, and Australia. It has been applied to numerous clinical problems; we illustrate applications of CRIMSON to real-world problems using examples ranging from pre-operative surgical planning to medical device design optimization.
    MeSH term(s) Alagille Syndrome/physiopathology ; Alagille Syndrome/surgery ; Blood Vessels/anatomy & histology ; Blood Vessels/diagnostic imaging ; Blood Vessels/physiology ; Computational Biology ; Computer Simulation ; Finite Element Analysis ; Heart Disease Risk Factors ; Hemodynamics/physiology ; Humans ; Imaging, Three-Dimensional ; Liver Transplantation/adverse effects ; Magnetic Resonance Imaging/statistics & numerical data ; Models, Anatomic ; Models, Cardiovascular ; Patient-Specific Modeling ; Postoperative Complications/etiology ; Software ; User-Computer Interface
    Language English
    Publishing date 2021-05-10
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2193340-6
    ISSN 1553-7358 ; 1553-734X
    ISSN (online) 1553-7358
    ISSN 1553-734X
    DOI 10.1371/journal.pcbi.1008881
    Database MEDical Literature Analysis and Retrieval System OnLINE

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