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  1. Article: Importance of Sequencing HBA1, HBA2 and HBB Genes to Confirm the Diagnosis of High Oxygen Affinity Hemoglobin

    Filser, Mathilde / Gardie, Betty / Wemeau, Mathieu / Aguilar-Martinez, Patricia / Giansily-Blaizot, Muriel / Girodon, François

    Genes. 2022 Jan. 12, v. 13, no. 1

    2022  

    Abstract: High oxygen affinity hemoglobin (HOAH) is the main cause of constitutional erythrocytosis. Mutations in the genes coding the alpha and beta globin chains (HBA1, HBA2 and HBB) strengthen the binding of oxygen to hemoglobin (Hb), bringing about tissue ... ...

    Abstract High oxygen affinity hemoglobin (HOAH) is the main cause of constitutional erythrocytosis. Mutations in the genes coding the alpha and beta globin chains (HBA1, HBA2 and HBB) strengthen the binding of oxygen to hemoglobin (Hb), bringing about tissue hypoxia and a secondary erythrocytosis. The diagnosis of HOAH is based upon the identification of a mutation in HBA1, HBA2 or HBB in specialized laboratories. Phenotypic studies of Hb are also useful, but electrophoretic analysis can be normal in 1/3 of cases. The establishment of the dissociation curve of Hb can be used as another screening test, a shift to the left indicating an increased affinity for Hb. The direct measurement of venous P50 using a Hemox Analyzer is of great importance, but due to specific analytic conditions, it is only available in a few specialized laboratories. Alternatively, an estimated measurement of the P50 can be obtained in most of the blood gas analyzers on venous blood. The aim of our study was therefore to determine whether a normal venous P50 value could rule out HOAH. We sequenced the HBB, HBA1 and HBA2 genes of 75 patients with idiopathic erythrocytosis. Patients had previously undergone an exhaustive medical check-up after which the venous P50 value was defined as normal. Surprisingly, sequencing detected HOAH in three patients (Hb Olympia in two patients, and Hb St Nazaire in another). A careful retrospective examination of their medical files revealed that (i) one of the P50 samples was arterial; (ii) there was some air in another sample; and (iii) the P50 measurement was not actually done in one of the patients. Our study shows that in real life conditions, due to pre-analytical contingencies, a venous P50 value that is classified as being normal may not be sufficient to rule out a diagnosis of HOAH. Therefore, we recommend the systematic sequencing of the HBB, HBA1 and HBA2 genes in the exploration of idiopathic erythrocytosis.
    Keywords air ; blood ; blood gases ; dissociation ; electrophoresis ; hemoglobin ; hypoxia ; mutation ; oxygen ; phenotype ; polycythemia
    Language English
    Dates of publication 2022-0112
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2527218-4
    ISSN 2073-4425
    ISSN 2073-4425
    DOI 10.3390/genes13010132
    Database NAL-Catalogue (AGRICOLA)

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  2. Article ; Online: Importance of Sequencing

    Filser, Mathilde / Gardie, Betty / Wemeau, Mathieu / Aguilar-Martinez, Patricia / Giansily-Blaizot, Muriel / Girodon, François

    Genes

    2022  Volume 13, Issue 1

    Abstract: High oxygen affinity hemoglobin (HOAH) is the main cause of constitutional erythrocytosis. Mutations in the genes coding the alpha and beta globin chains ( ...

    Abstract High oxygen affinity hemoglobin (HOAH) is the main cause of constitutional erythrocytosis. Mutations in the genes coding the alpha and beta globin chains (
    MeSH term(s) Adolescent ; Adult ; Aged ; Aged, 80 and over ; Child ; Female ; Genotype ; Glycated Hemoglobin/analysis ; Glycated Hemoglobin/genetics ; Hemoglobin A2/analysis ; Hemoglobin A2/genetics ; Hemoglobins/analysis ; Hemoglobins/genetics ; Humans ; Male ; Middle Aged ; Mutation ; Oxygen/metabolism ; Polycythemia/blood ; Polycythemia/diagnosis ; Polycythemia/genetics ; Retrospective Studies ; Young Adult
    Chemical Substances Glycated Hemoglobin A ; Hemoglobins ; Hemoglobin A2 (9034-53-1) ; hemoglobin B (9041-75-2) ; Oxygen (S88TT14065)
    Language English
    Publishing date 2022-01-12
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2527218-4
    ISSN 2073-4425 ; 2073-4425
    ISSN (online) 2073-4425
    ISSN 2073-4425
    DOI 10.3390/genes13010132
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Brain metastasis of a urothelial neuroendocrine carcinoma: A double pitfall for neuropathologists and DNA-methylation profiling.

    Tauziède-Espariat, Arnault / Masliah-Planchon, Julien / Tran, Suzanne / Filser, Mathilde / Saffroy, Raphaël / Bochaton, Dorian / Hasty, Lauren / Senova, Suhan / Kauv, Paul / Mokhtari, Karima / Adam, Clovis / Poté, Nicolas / Chrétien, Fabrice / Métais, Alice / Varlet, Pascale / Bielle, Franck / Laurenge, Alice

    Neuropathology and applied neurobiology

    2024  Volume 50, Issue 1, Page(s) e12951

    MeSH term(s) Humans ; Neuropathology ; Urinary Bladder Neoplasms/genetics ; Urinary Bladder Neoplasms/pathology ; DNA Methylation ; Brain Neoplasms/genetics ; Carcinoma, Neuroendocrine/genetics ; DNA
    Chemical Substances DNA (9007-49-2)
    Language English
    Publishing date 2024-01-24
    Publishing country England
    Document type Journal Article
    ZDB-ID 80371-6
    ISSN 1365-2990 ; 0305-1846
    ISSN (online) 1365-2990
    ISSN 0305-1846
    DOI 10.1111/nan.12951
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Adaptive nanopore sequencing to determine pathogenicity of

    Filser, Mathilde / Schwartz, Mathias / Merchadou, Kevin / Hamza, Abderaouf / Villy, Marie-Charlotte / Decees, Antoine / Frouin, Eléonore / Girard, Elodie / Caputo, Sandrine M / Renault, Victor / Becette, Véronique / Golmard, Lisa / Servant, Nicolas / Stoppa-Lyonnet, Dominique / Delattre, Olivier / Colas, Chrystelle / Masliah-Planchon, Julien

    Journal of medical genetics

    2023  Volume 60, Issue 12, Page(s) 1206–1209

    Abstract: ... ...

    Abstract BRCA1
    MeSH term(s) Female ; Humans ; Nanopore Sequencing ; Virulence ; Genetic Predisposition to Disease ; BRCA1 Protein/genetics ; BRCA2 Protein/genetics ; Genes, BRCA2 ; Exons ; Breast Neoplasms/genetics ; Germ-Line Mutation/genetics ; High-Throughput Nucleotide Sequencing/methods
    Chemical Substances BRCA1 Protein ; BRCA2 Protein ; BRCA1 protein, human
    Language English
    Publishing date 2023-11-27
    Publishing country England
    Document type Journal Article
    ZDB-ID 220881-7
    ISSN 1468-6244 ; 0022-2593
    ISSN (online) 1468-6244
    ISSN 0022-2593
    DOI 10.1136/jmg-2023-109155
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: First report of medulloblastoma in a patient with MUTYH-associated polyposis.

    Villy, Marie-Charlotte / Warcoin, Mathilde / Filser, Mathilde / Buecher, Bruno / Golmard, Lisa / Suybeng, Voreak / Schwartz, Mathias / Bieche, Ivan / Vacher, Sophie / Laurence, Valérie / Bourdeaut, Franck / Bernier, Michèle / Gutman, Tom / Stoppa-Lyonnet, Dominique / Masliah-Planchon, Julien / Colas, Chrystelle

    Neuropathology and applied neurobiology

    2023  Volume 49, Issue 4, Page(s) e12929

    Abstract: Aims: The mutY DNA glycosylase encoded by the MUTYH gene prevents G:C → T:A transversions through the base excision repair DNA repair system. Germline biallelic pathogenic variants in MUTYH cause an adenomatous polyposis called MUTYH-associated ... ...

    Abstract Aims: The mutY DNA glycosylase encoded by the MUTYH gene prevents G:C → T:A transversions through the base excision repair DNA repair system. Germline biallelic pathogenic variants in MUTYH cause an adenomatous polyposis called MUTYH-associated polyposis (MAP), an autosomal recessive disease (OMIM: 608456), with an increased risk of colorectal cancer. Digestive lesions in this context show an excess of G:C → T:A transversions, individualising a specific mutational signature associated with MUTYH deficiency called signature SBS36. Predisposition to other tumours in patients with germline biallelic pathogenic variants in MUTYH is suspected but remains unclear. We report the first case of medulloblastoma in a patient with MAP, carrying the homozygous pathogenic variant c.1227_1228dup, p.(Glu410Glyfs*43) in MUTYH.
    Methods: Whole exome sequencing was performed on the medulloblastoma to enlighten single nucleotide variants of interest, microsatellite status and mutational signature. The objective was to determine the involvement of MUTYH deficiency in the oncogenesis of this medulloblastoma.
    Results: The medulloblastoma has the mutational signature SBS36 and driver pathogenic variants in CTNNB1, PTCH1 and KDM6A corresponding to G:C → T:A transversions, suggesting a role of MUTYH deficiency in oncogenesis.
    Conclusions: Therefore, medulloblastoma could be a rare manifestation associated with germline biallelic pathogenic variants in MUTYH.
    MeSH term(s) Humans ; Medulloblastoma/genetics ; Genetic Predisposition to Disease ; Adenomatous Polyposis Coli/genetics ; Adenomatous Polyposis Coli/pathology ; Mutation ; Cerebellar Neoplasms/genetics ; Carcinogenesis ; Colorectal Neoplasms/genetics
    Language English
    Publishing date 2023-07-28
    Publishing country England
    Document type Case Reports ; Journal Article
    ZDB-ID 80371-6
    ISSN 1365-2990 ; 0305-1846
    ISSN (online) 1365-2990
    ISSN 0305-1846
    DOI 10.1111/nan.12929
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Low incidence of

    Filser, Mathilde / Aral, Bernard / Airaud, Fabrice / Chauveau, Aurélie / Bruce, Aisha / Polfrit, Yann / Thiebaut, Anne / Gauthier, Martin / Le Maréchal, Cédric / Lippert, Eric / Béziau, Stéphane / Garrec, Céline / Gardie, Betty / Girodon, François

    Haematologica

    2021  Volume 106, Issue 1, Page(s) 299–301

    MeSH term(s) Erythropoietin ; Humans ; Incidence ; Mutation ; Polycythemia/epidemiology ; Polycythemia/genetics ; Receptors, Erythropoietin/genetics
    Chemical Substances Receptors, Erythropoietin ; Erythropoietin (11096-26-7)
    Language English
    Publishing date 2021-01-01
    Publishing country Italy
    Document type Letter ; Research Support, Non-U.S. Gov't
    ZDB-ID 2333-4
    ISSN 1592-8721 ; 0017-6567 ; 0390-6078
    ISSN (online) 1592-8721
    ISSN 0017-6567 ; 0390-6078
    DOI 10.3324/haematol.2019.244160
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Coronavirus Disease 2019 Pandemic: Impact Caused by School Closure and National Lockdown on Pediatric Visits and Admissions for Viral and Nonviral Infections-a Time Series Analysis.

    Angoulvant, François / Ouldali, Naïm / Yang, David Dawei / Filser, Mathilde / Gajdos, Vincent / Rybak, Alexis / Guedj, Romain / Soussan-Banini, Valérie / Basmaci, Romain / Lefevre-Utile, Alain / Brun-Ney, Dominique / Beaujouan, Laure / Skurnik, David

    Clinical infectious diseases : an official publication of the Infectious Diseases Society of America

    2021  Volume 72, Issue 2, Page(s) 319–322

    Abstract: A time series analysis of 871 543 pediatric emergency visits revealed that the coronavirus disease 2019 (COVID-19) lockdown and school closures were associated with a significant decrease in infectious diseases disseminated through airborne or fecal-oral ...

    Abstract A time series analysis of 871 543 pediatric emergency visits revealed that the coronavirus disease 2019 (COVID-19) lockdown and school closures were associated with a significant decrease in infectious diseases disseminated through airborne or fecal-oral transmission: common cold, gastroenteritis, bronchiolitis, and acute otitis. No change was found for urinary tract infections.
    MeSH term(s) COVID-19 ; Child ; Communicable Disease Control ; Humans ; Pandemics ; SARS-CoV-2 ; Schools
    Language English
    Publishing date 2021-01-20
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1099781-7
    ISSN 1537-6591 ; 1058-4838
    ISSN (online) 1537-6591
    ISSN 1058-4838
    DOI 10.1093/cid/ciaa710
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Impact of interferon on a triple positive polycythemia vera.

    Campario, Hugo / Mosca, Matthieu / Aral, Bernard / Bourgeois, Valentin / Martin, Pauline / Brustel, Antoine / Filser, Mathilde / Marzac, Christophe / Plo, Isabelle / Girodon, François

    Leukemia

    2019  Volume 34, Issue 4, Page(s) 1210–1212

    MeSH term(s) Antiviral Agents ; Humans ; Interferon-alpha ; Janus Kinase 1 ; Mutation ; Polycythemia Vera ; STAT1 Transcription Factor
    Chemical Substances Antiviral Agents ; Interferon-alpha ; STAT1 Transcription Factor ; STAT1 protein, human ; JAK1 protein, human (EC 2.7.10.2) ; Janus Kinase 1 (EC 2.7.10.2)
    Language English
    Publishing date 2019-11-14
    Publishing country England
    Document type Letter ; Research Support, Non-U.S. Gov't ; Comment
    ZDB-ID 807030-1
    ISSN 1476-5551 ; 0887-6924
    ISSN (online) 1476-5551
    ISSN 0887-6924
    DOI 10.1038/s41375-019-0636-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: SpliceAI-visual: a free online tool to improve SpliceAI splicing variant interpretation.

    de Sainte Agathe, Jean-Madeleine / Filser, Mathilde / Isidor, Bertrand / Besnard, Thomas / Gueguen, Paul / Perrin, Aurélien / Van Goethem, Charles / Verebi, Camille / Masingue, Marion / Rendu, John / Cossée, Mireille / Bergougnoux, Anne / Frobert, Laurent / Buratti, Julien / Lejeune, Élodie / Le Guern, Éric / Pasquier, Florence / Clot, Fabienne / Kalatzis, Vasiliki /
    Roux, Anne-Françoise / Cogné, Benjamin / Baux, David

    Human genomics

    2023  Volume 17, Issue 1, Page(s) 7

    Abstract: SpliceAI is an open-source deep learning splicing prediction algorithm that has demonstrated in the past few years its high ability to predict splicing defects caused by DNA variations. However, its outputs present several drawbacks: (1) although the ... ...

    Abstract SpliceAI is an open-source deep learning splicing prediction algorithm that has demonstrated in the past few years its high ability to predict splicing defects caused by DNA variations. However, its outputs present several drawbacks: (1) although the numerical values are very convenient for batch filtering, their precise interpretation can be difficult, (2) the outputs are delta scores which can sometimes mask a severe consequence, and (3) complex delins are most often not handled. We present here SpliceAI-visual, a free online tool based on the SpliceAI algorithm, and show how it complements the traditional SpliceAI analysis. First, SpliceAI-visual manipulates raw scores and not delta scores, as the latter can be misleading in certain circumstances. Second, the outcome of SpliceAI-visual is user-friendly thanks to the graphical presentation. Third, SpliceAI-visual is currently one of the only SpliceAI-derived implementations able to annotate complex variants (e.g., complex delins). We report here the benefits of using SpliceAI-visual and demonstrate its relevance in the assessment/modulation of the PVS1 classification criteria. We also show how SpliceAI-visual can elucidate several complex splicing defects taken from the literature but also from unpublished cases. SpliceAI-visual is available as a Google Colab notebook and has also been fully integrated in a free online variant interpretation tool, MobiDetails ( https://mobidetails.iurc.montp.inserm.fr/MD ).
    MeSH term(s) Humans ; RNA Splicing/genetics ; Algorithms
    Language English
    Publishing date 2023-02-10
    Publishing country England
    Document type Journal Article ; Review ; Research Support, Non-U.S. Gov't
    ZDB-ID 2147618-4
    ISSN 1479-7364 ; 1479-7364
    ISSN (online) 1479-7364
    ISSN 1479-7364
    DOI 10.1186/s40246-023-00451-1
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: MSH3

    Villy, Marie-Charlotte / Masliah-Planchon, Julien / Schnitzler, Anne / Delhomelle, Hélène / Buecher, Bruno / Filser, Mathilde / Merchadou, Kevin / Golmard, Lisa / Melaabi, Samia / Vacher, Sophie / Blanluet, Maud / Suybeng, Voreak / Corsini, Carole / Dhooge, Marion / Hamzaoui, Nadim / Farelly, Solenne / Ait Omar, Amal / Benamouzig, Robert / Caumette, Vincent /
    Bahuau, Michel / Cucherousset, Joël / Allory, Yves / Stoppa-Lyonnet, Dominique / Bieche, Ivan / Colas, Chrystelle

    Journal of medical genetics

    2023  Volume 60, Issue 12, Page(s) 1198–1205

    Abstract: Background: The : Methods: We report five new unrelated patients with : Results: All patients had attenuated colorectal adenomatous polyposis, with duodenal polyposis in two cases. Both women had breast carcinomas. EMAST phenotype was present at ... ...

    Abstract Background: The
    Methods: We report five new unrelated patients with
    Results: All patients had attenuated colorectal adenomatous polyposis, with duodenal polyposis in two cases. Both women had breast carcinomas. EMAST phenotype was present at various levels in different samples of the five patients, confirming the
    Conclusion: This report lends further credence to biallelic
    MeSH term(s) Humans ; Female ; Adenomatous Polyposis Coli/genetics ; Colorectal Neoplasms/genetics ; Colorectal Neoplasms/pathology ; Microsatellite Repeats/genetics ; Colorectal Neoplasms, Hereditary Nonpolyposis/genetics ; Genetic Predisposition to Disease ; MutS Homolog 3 Protein/genetics ; MutS Homolog 3 Protein/metabolism
    Chemical Substances MSH3 protein, human ; MutS Homolog 3 Protein
    Language English
    Publishing date 2023-11-27
    Publishing country England
    Document type Journal Article
    ZDB-ID 220881-7
    ISSN 1468-6244 ; 0022-2593
    ISSN (online) 1468-6244
    ISSN 0022-2593
    DOI 10.1136/jmg-2023-109341
    Database MEDical Literature Analysis and Retrieval System OnLINE

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