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  1. Article ; Online: Genotype Combinations Drive Variability in the Microbiome Configuration of the Rhizosphere of Maize/Bean Intercropping System.

    Lanzavecchia, Giovanna / Frascarelli, Giulia / Rocchetti, Lorenzo / Bellucci, Elisa / Bitocchi, Elena / Di Vittori, Valerio / Sillo, Fabiano / Ferraris, Irene / Carta, Giada / Delledonne, Massimo / Nanni, Laura / Papa, Roberto

    International journal of molecular sciences

    2024  Volume 25, Issue 2

    Abstract: In an intercropping system, the interplay between cereals and legumes, which is strongly driven by the complementarity of below-ground structures and their interactions with the soil microbiome, raises a fundamental query: Can different genotypes alter ... ...

    Abstract In an intercropping system, the interplay between cereals and legumes, which is strongly driven by the complementarity of below-ground structures and their interactions with the soil microbiome, raises a fundamental query: Can different genotypes alter the configuration of the rhizosphere microbial communities? To address this issue, we conducted a field study, probing the effects of intercropping and diverse maize (
    MeSH term(s) Agriculture/methods ; Zea mays/genetics ; Plant Roots ; Rhizosphere ; RNA, Ribosomal, 16S/genetics ; Fabaceae/genetics ; Soil ; Bacteria/genetics ; Genotype ; Soil Microbiology
    Chemical Substances RNA, Ribosomal, 16S ; Soil
    Language English
    Publishing date 2024-01-20
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms25021288
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Current State and Perspectives in Population Genomics of the Common Bean.

    Cortinovis, Gaia / Frascarelli, Giulia / Di Vittori, Valerio / Papa, Roberto

    Plants (Basel, Switzerland)

    2020  Volume 9, Issue 3

    Abstract: ...

    Abstract *
    Language English
    Publishing date 2020-03-05
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2704341-1
    ISSN 2223-7747
    ISSN 2223-7747
    DOI 10.3390/plants9030330
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Challenges and Opportunities behind the Use of

    Papalini, Simone / Di Vittori, Valerio / Pieri, Alice / Allegrezza, Marina / Frascarelli, Giulia / Nanni, Laura / Bitocchi, Elena / Bellucci, Elisa / Gioia, Tania / Pereira, Luis Guasch / Susek, Karolina / Tenaillon, Maud / Neumann, Kerstin / Papa, Roberto

    Plants (Basel, Switzerland)

    2023  Volume 12, Issue 19

    Abstract: Paleogenomics focuses on the recovery, manipulation, and analysis of ancient DNA (aDNA) from historical or long-dead organisms to reconstruct and analyze their genomes. The aDNA is commonly obtained from remains found in paleontological and ... ...

    Abstract Paleogenomics focuses on the recovery, manipulation, and analysis of ancient DNA (aDNA) from historical or long-dead organisms to reconstruct and analyze their genomes. The aDNA is commonly obtained from remains found in paleontological and archaeological sites, conserved in museums, and in other archival collections.
    Language English
    Publishing date 2023-09-30
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2704341-1
    ISSN 2223-7747
    ISSN 2223-7747
    DOI 10.3390/plants12193452
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: CRISPR-Cas9-based repeat depletion for high-throughput genotyping of complex plant genomes.

    Rossato, Marzia / Marcolungo, Luca / De Antoni, Luca / Lopatriello, Giulia / Bellucci, Elisa / Cortinovis, Gaia / Frascarelli, Giulia / Nanni, Laura / Bitocchi, Elena / Di Vittori, Valerio / Vincenzi, Leonardo / Lucchini, Filippo / Bett, Kirstin E / Ramsay, Larissa / Konkin, David James / Delledonne, Massimo / Papa, Roberto

    Genome research

    2023  Volume 33, Issue 5, Page(s) 787–797

    Abstract: High-throughput genotyping enables the large-scale analysis of genetic diversity in population genomics and genome-wide association studies that combine the genotypic and phenotypic characterization of large collections of accessions. Sequencing-based ... ...

    Abstract High-throughput genotyping enables the large-scale analysis of genetic diversity in population genomics and genome-wide association studies that combine the genotypic and phenotypic characterization of large collections of accessions. Sequencing-based approaches for genotyping are progressively replacing traditional genotyping methods because of the lower ascertainment bias. However, genome-wide genotyping based on sequencing becomes expensive in species with large genomes and a high proportion of repetitive DNA. Here we describe the use of CRISPR-Cas9 technology to deplete repetitive elements in the 3.76-Gb genome of lentil (
    MeSH term(s) Genotype ; Genome-Wide Association Study ; CRISPR-Cas Systems ; Genome, Plant ; Genotyping Techniques ; High-Throughput Nucleotide Sequencing/methods ; Sequence Analysis, DNA/methods
    Language English
    Publishing date 2023-05-01
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1284872-4
    ISSN 1549-5469 ; 1088-9051 ; 1054-9803
    ISSN (online) 1549-5469
    ISSN 1088-9051 ; 1054-9803
    DOI 10.1101/gr.277628.122
    Database MEDical Literature Analysis and Retrieval System OnLINE

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    In stock of ZB MED Cologne/Königswinter

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    Jg. 1995 - 2021: Lesesall (2.OG)
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    Zs.MG 8: Show issues

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  5. Article: Characterization of Nutritional Quality Traits of a Common Bean Germplasm Collection

    Murube, Ester / Beleggia, Romina / Pacetti, Deborah / Nartea, Ancuta / Frascarelli, Giulia / Lanzavecchia, Giovanna / Bellucci, Elisa / Nanni, Laura / Gioia, Tania / Marciello, Ugo / Esposito, Stefania / Foresi, Giacomo / Logozzo, Giuseppina / Frega, Giuseppe Natale / Bitocchi, Elena / Papa, Roberto

    Foods. 2021 July 06, v. 10, no. 7

    2021  

    Abstract: Food legumes are at the crossroads of many societal challenges that involve agriculture, such as climate change and food sustainability and security. In this context, pulses have a crucial role in the development of plant-based diets, as they represent a ...

    Abstract Food legumes are at the crossroads of many societal challenges that involve agriculture, such as climate change and food sustainability and security. In this context, pulses have a crucial role in the development of plant-based diets, as they represent a very good source of nutritional components and improve soil fertility, such as by nitrogen fixation through symbiosis with rhizobia. The main contribution to promotion of food legumes in agroecosystems will come from plant breeding, which is guaranteed by the availability of well-characterized genetic resources. Here, we analyze seeds of 25 American and European common bean purified accessions (i.e., lines of single seed descent) for different morphological and compositional quality traits. Significant differences among the accessions and superior genotypes for important nutritional traits are identified, with some lines showing extreme values for more than one trait. Heritability estimates indicate the importance of considering the effects of environmental growth conditions on seed compositional traits. They suggest the need for more phenotypic characterization in different environments over different years to better characterize combined effects of environment and genotype on nutritional trait variations. Finally, adaptation following the introduction and spread of common bean in Europe seems to have affected its nutritional profile. This finding further suggests the relevance of evolutionary studies to guide breeders in the choice of plant genetic resources.
    Keywords agroecosystems ; beans ; climate change ; genotype ; germplasm conservation ; heritability ; nitrogen fixation ; nutrient content ; nutritive value ; phenotype ; soil fertility ; sustainable agriculture ; symbiosis ; Europe
    Language English
    Dates of publication 2021-0706
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2704223-6
    ISSN 2304-8158
    ISSN 2304-8158
    DOI 10.3390/foods10071572
    Database NAL-Catalogue (AGRICOLA)

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  6. Article: Characterization of Nutritional Quality Traits of a Common Bean Germplasm Collection.

    Murube, Ester / Beleggia, Romina / Pacetti, Deborah / Nartea, Ancuta / Frascarelli, Giulia / Lanzavecchia, Giovanna / Bellucci, Elisa / Nanni, Laura / Gioia, Tania / Marciello, Ugo / Esposito, Stefania / Foresi, Giacomo / Logozzo, Giuseppina / Frega, Giuseppe Natale / Bitocchi, Elena / Papa, Roberto

    Foods (Basel, Switzerland)

    2021  Volume 10, Issue 7

    Abstract: Food legumes are at the crossroads of many societal challenges that involve agriculture, such as climate change and food sustainability and security. In this context, pulses have a crucial role in the development of plant-based diets, as they represent a ...

    Abstract Food legumes are at the crossroads of many societal challenges that involve agriculture, such as climate change and food sustainability and security. In this context, pulses have a crucial role in the development of plant-based diets, as they represent a very good source of nutritional components and improve soil fertility, such as by nitrogen fixation through symbiosis with rhizobia. The main contribution to promotion of food legumes in agroecosystems will come from plant breeding, which is guaranteed by the availability of well-characterized genetic resources. Here, we analyze seeds of 25 American and European common bean purified accessions (i.e., lines of single seed descent) for different morphological and compositional quality traits. Significant differences among the accessions and superior genotypes for important nutritional traits are identified, with some lines showing extreme values for more than one trait. Heritability estimates indicate the importance of considering the effects of environmental growth conditions on seed compositional traits. They suggest the need for more phenotypic characterization in different environments over different years to better characterize combined effects of environment and genotype on nutritional trait variations. Finally, adaptation following the introduction and spread of common bean in Europe seems to have affected its nutritional profile. This finding further suggests the relevance of evolutionary studies to guide breeders in the choice of plant genetic resources.
    Language English
    Publishing date 2021-07-06
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2704223-6
    ISSN 2304-8158
    ISSN 2304-8158
    DOI 10.3390/foods10071572
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Selection and adaptive introgression guided the complex evolutionary history of the European common bean.

    Bellucci, Elisa / Benazzo, Andrea / Xu, Chunming / Bitocchi, Elena / Rodriguez, Monica / Alseekh, Saleh / Di Vittori, Valerio / Gioia, Tania / Neumann, Kerstin / Cortinovis, Gaia / Frascarelli, Giulia / Murube, Ester / Trucchi, Emiliano / Nanni, Laura / Ariani, Andrea / Logozzo, Giuseppina / Shin, Jin Hee / Liu, Chaochih / Jiang, Liang /
    Ferreira, Juan José / Campa, Ana / Attene, Giovanna / Morrell, Peter L / Bertorelle, Giorgio / Graner, Andreas / Gepts, Paul / Fernie, Alisdair R / Jackson, Scott A / Papa, Roberto

    Nature communications

    2023  Volume 14, Issue 1, Page(s) 1908

    Abstract: Domesticated crops have been disseminated by humans over vast geographic areas. Common bean (Phaseolus vulgaris L.) was introduced in Europe after 1492. Here, by combining whole-genome profiling, metabolic fingerprinting and phenotypic characterisation, ... ...

    Abstract Domesticated crops have been disseminated by humans over vast geographic areas. Common bean (Phaseolus vulgaris L.) was introduced in Europe after 1492. Here, by combining whole-genome profiling, metabolic fingerprinting and phenotypic characterisation, we show that the first common bean cultigens successfully introduced into Europe were of Andean origin, after Francisco Pizarro's expedition to northern Peru in 1529. We reveal that hybridisation, selection and recombination have shaped the genomic diversity of the European common bean in parallel with political constraints. There is clear evidence of adaptive introgression into the Mesoamerican-derived European genotypes, with 44 Andean introgressed genomic segments shared by more than 90% of European accessions and distributed across all chromosomes except PvChr11. Genomic scans for signatures of selection highlight the role of genes relevant to flowering and environmental adaptation, suggesting that introgression has been crucial for the dissemination of this tropical crop to the temperate regions of Europe.
    MeSH term(s) Humans ; Phaseolus/genetics ; Genetic Variation ; Genotype ; Biological Evolution ; Hybridization, Genetic
    Language English
    Publishing date 2023-04-05
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-023-37332-z
    Database MEDical Literature Analysis and Retrieval System OnLINE

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