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  1. Article: Arabinogalactan-Proteins as Boron-Acting Enzymes, Cross-Linking the Rhamnogalacturonan-II Domains of Pectin.

    Begum, Rifat Ara / Fry, Stephen C

    Plants (Basel, Switzerland)

    2023  Volume 12, Issue 23

    Abstract: Most pectic rhamnogalacturonan-II (RG-II) domains in plant cell walls are borate-bridged dimers. However, the sub-cellular locations, pH dependence, reversibility and biocatalyst involvement in borate bridging remain uncertain. Experiments discussed here ...

    Abstract Most pectic rhamnogalacturonan-II (RG-II) domains in plant cell walls are borate-bridged dimers. However, the sub-cellular locations, pH dependence, reversibility and biocatalyst involvement in borate bridging remain uncertain. Experiments discussed here explored these questions, utilising suspension-cultured plant cells. In-vivo pulse radiolabelling showed that most RG-II domains dimerise extremely quickly (<4 min after biosynthesis, thus while still intraprotoplasmic). This tallies with the finding that boron withdrawal causes cell wall weakening within 10-20 min, and supports a previously proposed biological role for boron/RG-II complexes specifically at the wall/membrane interface. We also discuss RG-II monomer ↔ dimer interconversion as monitored in vitro using gel electrophoresis and a novel thin-layer chromatography method to resolve monomers and dimers. Physiologically relevant acidity did not monomerise dimers, thus boron bridge breaking cannot be a wall-loosening mechanism in 'acid growth'; nevertheless, recently discovered RG-II trimers and tetramers are unstable and may thus underpin reversible wall loosening. Dimerising monomers in vitro by B(OH)
    Language English
    Publishing date 2023-11-21
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2704341-1
    ISSN 2223-7747
    ISSN 2223-7747
    DOI 10.3390/plants12233921
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Copper, cadmium and nickel pollution inhibit growth and promote ascorbate catabolism in cell cultures of Arabidopsis thaliana and Zea mays

    Farhat, Fozia / Fry, Stephen C.

    Plant Biosystems - An International Journal Dealing with all Aspects of Plant Biology. 2023 May 4, v. 157, no. 3 p.699-710

    2023  

    Abstract: We established model systems for exploring the roles of symplastic and apoplastic ascorbate in heavy-metal-polluted dicot and monocot cells. Cell-suspension cultures of Arabidopsis and maize were treated with copper, cadmium or nickel; growth and ... ...

    Abstract We established model systems for exploring the roles of symplastic and apoplastic ascorbate in heavy-metal-polluted dicot and monocot cells. Cell-suspension cultures of Arabidopsis and maize were treated with copper, cadmium or nickel; growth and ascorbate metabolism were measured. Growth was halved by ∼80 µM Cu²⁺, 90 µM Cd²⁺ or 1200 µM Ni²⁺ in Arabidopsis, and ∼90 µM Cu²⁺, 650 µM Cd²⁺ or 650 µM Ni²⁺ in maize. Cu²⁺ (128 µM) and Cd²⁺ (512 µM) caused partial loss of symplastic ascorbate, especially in Arabidopsis; Ni²⁺ (512 and 2048 µM) had moderate effects. Added apoplastic l-ascorbate (1 mM) was consumed by the cultures (half-life ∼23 and 44 min in Arabidopsis and maize, respectively), consumption rate being 3–6-fold increased by Cu²⁺, Cd²⁺ and Ni²⁺ in Arabidopsis, and by Cu²⁺ in maize; Cd²⁺ and Ni²⁺ had relatively little effect on apoplastic ascorbate consumption in maize. Radioactivity from exogenous 1 mM l-[1-¹⁴C]ascorbate remained extracellular; catabolites formed were dehydroascorbic acid, diketogulonate and oxalyl-threonates. In conclusion, suspension-cultured cells respond to heavy-metal stresses by maintaining symplastic ascorbate concentrations, which may beneficially scavenge symplastic reactive oxygen species (ROS). Apoplastic ascorbate is catabolised in metal-polluted cultures via several oxidative and non-oxidative reactions, the former potentially scavenging stress-related apoplastic ROS.
    Keywords Arabidopsis thaliana ; Zea mays ; cadmium ; catabolism ; copper ; corn ; dehydroascorbic acid ; half life ; heavy metals ; metabolites ; nickel ; plant biology ; pollution ; radioactivity ; reactive oxygen species ; Heavy metal stress ; ascorbate turnover ; cell cultures ; defence response ; metal detoxification
    Language English
    Dates of publication 2023-0504
    Size p. 699-710.
    Publishing place Taylor & Francis
    Document type Article ; Online
    ZDB-ID 2146652-X
    ISSN 1724-5575 ; 1126-3504
    ISSN (online) 1724-5575
    ISSN 1126-3504
    DOI 10.1080/11263504.2023.2188273
    Database NAL-Catalogue (AGRICOLA)

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  3. Article ; Online: Ascorbate degradation: pathways, products, and possibilities.

    Ford, Christopher M / Sweetman, Crystal / Fry, Stephen C

    Journal of experimental botany

    2024  Volume 75, Issue 9, Page(s) 2733–2739

    Abstract: A role for l-ascorbate as the precursor of several plant compounds adds to its already broad metabolic utility. There are many examples of plant species in which oxalate and l-threonate are formed from l-ascorbate breakdown, and a number of roles have ... ...

    Abstract A role for l-ascorbate as the precursor of several plant compounds adds to its already broad metabolic utility. There are many examples of plant species in which oxalate and l-threonate are formed from l-ascorbate breakdown, and a number of roles have been proposed for this: structural, physiological, and biochemical. On the other hand, the synthesis of l-tartrate from l-ascorbate remains limited to a very few species, amongst which we must be grateful to count the domesticated grapevine Vitis vinifera and its relatives on which wine production is based. Pathways for the degradation of ascorbate were first proposed ~50 years ago and have formed the basis of more recent biochemical and molecular analyses. The present review seeks to summarize some of these findings and to propose opportunities for future research.
    MeSH term(s) Ascorbic Acid/metabolism ; Plants/metabolism ; Metabolic Networks and Pathways ; Vitis/metabolism
    Chemical Substances Ascorbic Acid (PQ6CK8PD0R)
    Language English
    Publishing date 2024-02-23
    Publishing country England
    Document type Journal Article ; Review ; Research Support, Non-U.S. Gov't
    ZDB-ID 2976-2
    ISSN 1460-2431 ; 0022-0957
    ISSN (online) 1460-2431
    ISSN 0022-0957
    DOI 10.1093/jxb/erae048
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: High-Voltage Paper Electrophoresis (HVPE).

    Fry, Stephen C

    Methods in molecular biology (Clifton, N.J.)

    2020  Volume 2149, Page(s) 1–31

    Abstract: HVPE is an excellent and often overlooked method for obtaining objective and meaningful information about cell-wall "building blocks" and their metabolic precursors. It provides not only a means of analysis of known compounds but also an insight into the ...

    Abstract HVPE is an excellent and often overlooked method for obtaining objective and meaningful information about cell-wall "building blocks" and their metabolic precursors. It provides not only a means of analysis of known compounds but also an insight into the charge and/or mass of any unfamiliar compounds that may be encountered. It can be used preparatively or analytically. It can achieve either "class separations" (e.g., delivering all hexose monophosphates into a single pool) or the resolution of different compounds within a given class (e.g., ADP-Glc from UDP-Glc; or GlcA from GalA).All information from HVPE about charge and mass can be obtained on minute traces of analytes, especially those that have been radiolabeled, for example by in-vivo feeding of a
    MeSH term(s) Anions ; Biological Assay ; Buffers ; Calibration ; Cations ; Cell Wall/chemistry ; Electricity ; Electrophoresis, Paper/methods ; Hydrogen-Ion Concentration ; Metabolome ; Phosphorylation ; Staining and Labeling ; Wettability
    Chemical Substances Anions ; Buffers ; Cations
    Language English
    Publishing date 2020-07-02
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 1940-6029
    ISSN (online) 1940-6029
    DOI 10.1007/978-1-0716-0621-6_1
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Boron bridging of rhamnogalacturonan-II in Rosa and arabidopsis cell cultures occurs mainly in the endo-membrane system and continues at a reduced rate after secretion.

    Begum, Rifat Ara / Fry, Stephen C

    Annals of botany

    2022  Volume 130, Issue 5, Page(s) 703–715

    Abstract: Background and aims: Rhamnogalacturonan-II (RG-II) is a domain of primary cell-wall pectin. Pairs of RG-II domains are covalently cross-linked via borate diester bridges, necessary for normal cell growth. Interpreting the precise mechanism and roles of ... ...

    Abstract Background and aims: Rhamnogalacturonan-II (RG-II) is a domain of primary cell-wall pectin. Pairs of RG-II domains are covalently cross-linked via borate diester bridges, necessary for normal cell growth. Interpreting the precise mechanism and roles of boron bridging is difficult because there are conflicting hypotheses as to whether bridging occurs mainly within the Golgi system, concurrently with secretion or within the cell wall. We therefore explored the kinetics of RG-II bridging.
    Methods: Cell-suspension cultures of Rosa and arabidopsis were pulse-radiolabelled with [14C]glucose, then the boron bridging status of newly synthesized [14C]RG-II domains was tracked by polyacrylamide gel electrophoresis of endo-polygalacturonase digests.
    Key results: Optimal culture ages for 14C-labelling were ~5 and ~1 d in Rosa and arabidopsis respectively. De-novo [14C]polysaccharide production occurred for the first ~90 min; thereafter the radiolabelled molecules were tracked as they 'aged' in the wall. Monomeric and (boron-bridged) dimeric [14C]RG-II domains appeared simultaneously, both being detectable within 4 min of [14C]glucose feeding, i.e. well before the secretion of newly synthesized [14C]polysaccharides into the apoplast at ~15-20 min. The [14C]dimer : [14C]monomer ratio of RG-II remained approximately constant from 4 to 120 min, indicating that boron bridging was occurring within the Golgi system during polysaccharide biosynthesis. However, [14C]dimers increased slightly over the following 15 h, indicating that limited boron bridging was continuing after secretion.
    Conclusions: The results show where in the cell (and thus when in the 'career' of an RG-II domain) boron bridging occurs, helping to define the possible biological roles of RG-II dimerization and the probable localization of boron-donating glycoproteins or glycolipids.
    MeSH term(s) Arabidopsis ; Boron ; Rosa ; Rhamnogalacturonans ; Pectins ; Cell Wall ; Polysaccharides ; Cell Culture Techniques ; Glucose
    Chemical Substances Boron (N9E3X5056Q) ; Rhamnogalacturonans ; Carbon-14 (7V68J5677O) ; Pectins (89NA02M4RX) ; Polysaccharides ; Glucose (IY9XDZ35W2)
    Language English
    Publishing date 2022-09-03
    Publishing country England
    Document type Journal Article
    ZDB-ID 1461328-1
    ISSN 1095-8290 ; 0305-7364
    ISSN (online) 1095-8290
    ISSN 0305-7364
    DOI 10.1093/aob/mcac119
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Biochemical characterisation of cellulose and cell-wall-matrix polysaccharides in variously oxidised sugar-beet pulp preparations differing in viscosity.

    Whale, Eric / Bulling, Anne E K / Fry, Stephen C

    International journal of biological macromolecules

    2023  Volume 253, Issue Pt 7, Page(s) 127356

    Abstract: Sugar-beet pulp (SBP) is an abundant, cellulose-rich, non-food by-product of agriculture. Oxidised SBP (oP) has valuable viscosity attributes, and different oxidation protocols yield higher- or lower-viscosity oP. We investigated how SBP polysaccharides ... ...

    Abstract Sugar-beet pulp (SBP) is an abundant, cellulose-rich, non-food by-product of agriculture. Oxidised SBP (oP) has valuable viscosity attributes, and different oxidation protocols yield higher- or lower-viscosity oP. We investigated how SBP polysaccharides change during oxidation, since these changes must define oP quality. Oxidation solubilised much pectin and hemicellulose; however, most cellulose stayed insoluble. Fresh SBP contains negligible 'hemicellulose a' (=alkali-extractable polysaccharides that precipitate upon acidification), but oxidation created abundant glucose-rich 'hemicellulose a' from SBP cellulose. We propose that the cellulose acquired COOH groups, conferring alkali-extractability and admitting more water, thereby augmenting viscosity. The pectin and hemicellulose molecules that were retained during oxidation had been partially depolymerised, and their median M
    MeSH term(s) Cellulose/chemistry ; Beta vulgaris/chemistry ; Viscosity ; Polysaccharides/chemistry ; Pectins/chemistry ; Glucose ; Water
    Chemical Substances Cellulose (9004-34-6) ; Polysaccharides ; Pectins (89NA02M4RX) ; Glucose (IY9XDZ35W2) ; Water (059QF0KO0R)
    Language English
    Publishing date 2023-10-13
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 282732-3
    ISSN 1879-0003 ; 0141-8130
    ISSN (online) 1879-0003
    ISSN 0141-8130
    DOI 10.1016/j.ijbiomac.2023.127356
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  7. Article ; Online: Making and breaking of boron bridges in the pectic domain rhamnogalacturonan-II at apoplastic pH in vivo and in vitro.

    Begum, Rifat Ara / Messenger, David J / Fry, Stephen C

    The Plant journal : for cell and molecular biology

    2023  Volume 113, Issue 6, Page(s) 1310–1329

    Abstract: Cross-linking of the cell-wall pectin domain rhamnogalacturonan-II (RG-II) via boron bridges between apiose residues is essential for normal plant growth and development, but little is known about its mechanism or reversibility. We characterized the ... ...

    Abstract Cross-linking of the cell-wall pectin domain rhamnogalacturonan-II (RG-II) via boron bridges between apiose residues is essential for normal plant growth and development, but little is known about its mechanism or reversibility. We characterized the making and breaking of boron bridges in vivo and in vitro at 'apoplastic' pH. RG-II (13-26 μm) was incubated in living Rosa cell cultures and cell-free media with and without 1.2 mm H
    MeSH term(s) Boron ; Borates ; Rhamnogalacturonans/analysis ; Lead/analysis ; Pectins/chemistry ; Cations ; Cell Wall/chemistry
    Chemical Substances Boron (N9E3X5056Q) ; Borates ; Rhamnogalacturonans ; Lead (2P299V784P) ; Pectins (89NA02M4RX) ; Cations
    Language English
    Publishing date 2023-02-08
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1088037-9
    ISSN 1365-313X ; 0960-7412
    ISSN (online) 1365-313X
    ISSN 0960-7412
    DOI 10.1111/tpj.16112
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Hemicellulose-remodelling transglycanase activities from charophytes: towards the evolution of the land-plant cell wall.

    Franková, Lenka / Fry, Stephen C

    The Plant journal : for cell and molecular biology

    2021  Volume 108, Issue 1, Page(s) 7–28

    Abstract: Transglycanases remodel cell-wall polymers, having a critical impact on many physiological processes. Unlike xyloglucan endotransglucosylase (XET) activity, widely studied in land plants, very little is known about charophyte wall-modifying enzymes - ... ...

    Abstract Transglycanases remodel cell-wall polymers, having a critical impact on many physiological processes. Unlike xyloglucan endotransglucosylase (XET) activity, widely studied in land plants, very little is known about charophyte wall-modifying enzymes - information that would promote our understanding of the 'primordial' wall, revealing how the wall matrix is remodelled in the closest living algal relatives of land plants, and what changed during terrestrialisation. We conducted various in-vitro assays for wall-remodelling transglycosylases, monitoring either (a) polysaccharide-to-[
    MeSH term(s) Biological Evolution ; Cell Wall/metabolism ; Charophyceae/enzymology ; Charophyceae/genetics ; Charophyceae/physiology ; Embryophyta ; Glucans/metabolism ; Glycoside Hydrolases/genetics ; Glycoside Hydrolases/metabolism ; Glycosyltransferases/genetics ; Glycosyltransferases/metabolism ; Mannans/metabolism ; Multienzyme Complexes/genetics ; Multienzyme Complexes/metabolism ; Plant Proteins/genetics ; Plant Proteins/metabolism ; Polysaccharides/metabolism ; Transferases/genetics ; Transferases/metabolism ; Xylans/metabolism
    Chemical Substances Glucans ; Mannans ; Multienzyme Complexes ; Plant Proteins ; Polysaccharides ; Xylans ; transglycosidase enzyme system ; xyloglucan (37294-28-3) ; hemicellulose (8024-50-8) ; Transferases (EC 2.-) ; Glycosyltransferases (EC 2.4.-) ; xyloglucan - xyloglucosyltransferase (EC 2.4.1.207) ; Glycoside Hydrolases (EC 3.2.1.-)
    Language English
    Publishing date 2021-10-09
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1088037-9
    ISSN 1365-313X ; 0960-7412
    ISSN (online) 1365-313X
    ISSN 0960-7412
    DOI 10.1111/tpj.15500
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Cutin:xyloglucan transacylase (CXT) activity covalently links cutin to a plant cell-wall polysaccharide.

    Xin, Anzhou / Fry, Stephen C

    Journal of plant physiology

    2021  Volume 262, Page(s) 153446

    Abstract: The shoot epidermal cell wall in land-plants is associated with a polyester, cutin, which controls water loss and possibly organ expansion. Covalent bonds between cutin and its neighbouring cell-wall polysaccharides have long been proposed. However, the ... ...

    Abstract The shoot epidermal cell wall in land-plants is associated with a polyester, cutin, which controls water loss and possibly organ expansion. Covalent bonds between cutin and its neighbouring cell-wall polysaccharides have long been proposed. However, the lack of biochemical evidence makes cutin-polysaccharide linkages largely conjectural. Here we optimised a portfolio of radiochemical assays to look for cutin-polysaccharide ester bonds in the epidermis of pea epicotyls, ice-plant leaves and tomato fruits, based on the hypothesis that a transacylase remodels cutin in a similar fashion to cutin synthase and cutin:cutin transacylase activities. Through in-situ enzyme assays and chemical degradations coupled with chromatographic analysis of the
    MeSH term(s) Acyltransferases/metabolism ; Cell Wall/metabolism ; Glucans/metabolism ; Solanum lycopersicum/metabolism ; Membrane Lipids/metabolism ; Mesembryanthemum/metabolism ; Pisum sativum/metabolism ; Plant Proteins/metabolism ; Polysaccharides/metabolism ; Xylans/metabolism
    Chemical Substances Glucans ; Membrane Lipids ; Plant Proteins ; Polysaccharides ; Xylans ; xyloglucan (37294-28-3) ; cutin (54990-88-4) ; Acyltransferases (EC 2.3.-)
    Language English
    Publishing date 2021-05-21
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 283647-6
    ISSN 1618-1328 ; 0176-1617
    ISSN (online) 1618-1328
    ISSN 0176-1617
    DOI 10.1016/j.jplph.2021.153446
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  10. Article: Hemicellulose‐remodelling transglycanase activities from charophytes: towards the evolution of the land‐plant cell wall

    Franková, Lenka / Fry, Stephen C.

    plant journal. 2021 Oct., v. 108, no. 1

    2021  

    Abstract: Transglycanases remodel cell‐wall polymers, having a critical impact on many physiological processes. Unlike xyloglucan endotransglucosylase (XET) activity, widely studied in land plants, very little is known about charophyte wall‐modifying enzymes – ... ...

    Abstract Transglycanases remodel cell‐wall polymers, having a critical impact on many physiological processes. Unlike xyloglucan endotransglucosylase (XET) activity, widely studied in land plants, very little is known about charophyte wall‐modifying enzymes – information that would promote our understanding of the ‘primordial’ wall, revealing how the wall matrix is remodelled in the closest living algal relatives of land plants, and what changed during terrestrialisation. We conducted various in‐vitro assays for wall‐remodelling transglycosylases, monitoring either (a) polysaccharide‐to‐[³H]oligosaccharide transglycosylation or (b) non‐radioactive oligosaccharide‐to‐oligosaccharide transglycosylation. We screened a wide collection of enzyme extracts from charophytes (and early‐diverging land plants for comparison) and discovered several homo‐ and hetero‐transglycanase activities. In contrast to most land plants, charophytes possess high trans‐β‐1,4‐mannanase activity, suggesting that land plants’ algal ancestors prioritised mannan remodelling. Trans‐β‐1,4‐xylanase activity was also found, most abundantly in Chara, Nitella and Klebsormidium. Exo‐acting transglycosidase activities (trans‐β‐1,4‐xylosidase and trans‐β‐1,4‐mannosidase) were also detected. In addition, charophytes exhibited homo‐ and hetero‐trans‐β‐glucanase activities (XET, mixed‐linkage glucan [MLG]:xyloglucan endotransglucosylase and cellulose:xyloglucan endotransglucosylase) despite the paucity or lack of land‐plant‐like xyloglucan and MLG as potential donor substrates in their cell walls. However, trans‐α‐xylosidase activity (which remodels xyloglucan in angiosperms) was absent in charophytes and early‐diverging land plants. Transglycanase action was also found in situ, acting on endogenous algal polysaccharides as donor substrates and fluorescent xyloglucan oligosaccharides as acceptor substrates. We conclude that trans‐β‐mannanase and trans‐β‐xylanase activities are present and thus may play key roles in charophyte walls (most of which possess little or no xyloglucan and MLG, but often contain abundant β‐mannans and β‐xylans), comparable to the roles of XET in xyloglucan‐rich land plants.
    Keywords Chara ; Klebsormidium ; Nitella ; algae ; cell walls ; evolution ; fluorescence ; glycosylation ; oligosaccharides ; xyloglucan:xyloglucosyl transferase ; xyloglucans
    Language English
    Dates of publication 2021-10
    Size p. 7-28.
    Publishing place John Wiley & Sons, Ltd
    Document type Article
    Note JOURNAL ARTICLE
    ZDB-ID 1088037-9
    ISSN 1365-313X ; 0960-7412
    ISSN (online) 1365-313X
    ISSN 0960-7412
    DOI 10.1111/tpj.15500
    Database NAL-Catalogue (AGRICOLA)

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