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Article ; Online: Executive Functions in a Patient with Low-Grade Glioma of the Central Nervous System: A Case Report.

Guerrero Gómez, Manuel José / Jiménez Urrego, Ángela / Gonzáles, Fernando / Botero Carvajal, Alejandro

Tomography (Ann Arbor, Mich.)

2024 Volume 10, Issue 4, Page(s) 609–617

Abstract: Central nervous system tumors produce adverse outcomes in daily life, although low-grade gliomas are rare in adults. In neurological clinics, the state of impairment of executive functions goes unnoticed in the examinations and interviews carried out. ... ...

Abstract	Central nervous system tumors produce adverse outcomes in daily life, although low-grade gliomas are rare in adults. In neurological clinics, the state of impairment of executive functions goes unnoticed in the examinations and interviews carried out. For this reason, the objective of this study was to describe the executive function of a 59-year-old adult neurocancer patient. This study is novel in integrating and demonstrating biological effects and outcomes in performance evaluated by a neuropsychological instrument and psychological interviews. For this purpose, pre- and post-evaluations were carried out of neurological and neuropsychological functioning through neuroimaging techniques (iRM, spectroscopy, electroencephalography), hospital medical history, psychological interviews, and the Wisconsin Card Classification Test (WCST). There was evidence of deterioration in executive performance, as evidenced by the increase in perseverative scores, failure to maintain one's attitude, and an inability to learn in relation to clinical samples. This information coincides with the evolution of neuroimaging over time. Our case shows that the presence of the tumor is associated with alterations in executive functions that are not very evident in clinical interviews or are explicit in neuropsychological evaluations. In this study, we quantified the degree of impairment of executive functions in a patient with low-grade glioma in a middle-income country where research is scarce.
MeSH term(s)	Humans ; Executive Function/physiology ; Middle Aged ; Glioma/pathology ; Glioma/diagnostic imaging ; Glioma/psychology ; Brain Neoplasms/diagnostic imaging ; Brain Neoplasms/pathology ; Brain Neoplasms/psychology ; Neuropsychological Tests ; Male ; Magnetic Resonance Imaging/methods ; Electroencephalography ; Female
Language	English
Publishing date	2024-04-18
Publishing country	Switzerland
Document type	Journal Article ; Case Reports
ISSN	2379-139X
ISSN (online)	2379-139X
DOI	10.3390/tomography10040046
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Article ; Online: Nrg1 Regulates Cardiomyocyte Migration and Cell Cycle in Ventricular Development.

Grego-Bessa, Joaquim / Gómez-Apiñaniz, Paula / Prados, Belén / Gómez, Manuel José / MacGrogan, Donal / de la Pompa, José Luis

Circulation research

2023 Volume 133, Issue 11, Page(s) 927–943

Abstract: Background: Cardiac ventricles provide the contractile force of the beating heart throughout life. How the primitive endocardium-layered myocardial projections called trabeculae form and mature into the adult ventricles is of great interest for biology ... ...

Abstract	Background: Cardiac ventricles provide the contractile force of the beating heart throughout life. How the primitive endocardium-layered myocardial projections called trabeculae form and mature into the adult ventricles is of great interest for biology and regenerative medicine. Trabeculation is dependent on the signaling protein Nrg1 (neuregulin-1). However, the mechanism of action of Nrg1 and its role in ventricular wall maturation are poorly understood. Methods: We investigated the functions and downstream mechanisms of Nrg1 signaling during ventricular chamber development using confocal imaging, transcriptomics, and biochemical approaches in mice with cardiac-specific inactivation or overexpression of Nrg1. Results: Analysis of cardiac-specific Conclusions: These data establish the Nrg1-ErbB2/ErbB4-Erk axis as a crucial regulator of cardiomyocyte cell cycle progression and migration during ventricular development.
MeSH term(s)	Animals ; Mice ; Myocytes, Cardiac/metabolism ; Neuregulin-1/genetics ; Myocardium/metabolism ; Heart Ventricles/metabolism ; Cell Division
Chemical Substances	Neuregulin-1 ; Nrg1 protein, mouse
Language	English
Publishing date	2023-10-17
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	80100-8
ISSN	1524-4571 ; 0009-7330 ; 0931-6876
ISSN (online)	1524-4571
ISSN	0009-7330 ; 0931-6876
DOI	10.1161/CIRCRESAHA.123.323321
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Article ; Online: MiRNA post-transcriptional modification dynamics in T cell activation.

Rodríguez-Galán, Ana / Dosil, Sara G / Gómez, Manuel José / Fernández-Delgado, Irene / Fernández-Messina, Lola / Sánchez-Cabo, Fátima / Sánchez-Madrid, Francisco

iScience

2021 Volume 24, Issue 6, Page(s) 102530

Abstract: T cell activation leads to extensive changes in the miRNA repertoire. Although overall miRNA expression decreases within a few hours of T cell activation, some individual miRNAs are specifically upregulated. Using next-generation sequencing, we assessed ... ...

Abstract	T cell activation leads to extensive changes in the miRNA repertoire. Although overall miRNA expression decreases within a few hours of T cell activation, some individual miRNAs are specifically upregulated. Using next-generation sequencing, we assessed miRNA expression and post-transcriptional modification kinetics in human primary CD4+ T cells upon T cell receptor (TCR) or type I interferon stimulation. This analysis identified differential expression of multiple miRNAs not previously linked to T cell activation. Remarkably, upregulated miRNAs showed a higher frequency of 3' adenylation. TCR stimulation was followed by increased expression of RNA modifying enzymes and the RNA degrading enzymes Dis3L2 and Eri1. In the midst of this adverse environment, 3' adenylation may serve a protective function that could be exploited to improve miRNA stability for T cell-targeted therapy.
Language	English
Publishing date	2021-05-12
Publishing country	United States
Document type	Journal Article
ISSN	2589-0042
ISSN (online)	2589-0042
DOI	10.1016/j.isci.2021.102530
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Article ; Online: ISG20L2: an RNA nuclease regulating T cell activation.

Rodríguez-Galán, Ana / Dosil, Sara G / Hrčková, Anna / Fernández-Messina, Lola / Feketová, Zuzana / Pokorná, Julie / Fernández-Delgado, Irene / Camafeita, Emilio / Gómez, Manuel José / Ramírez-Huesca, Marta / Gutiérrez-Vázquez, Cristina / Sánchez-Cabo, Fátima / Vázquez, Jesús / Vaňáčová, Štěpánka / Sánchez-Madrid, Francisco

Cellular and molecular life sciences : CMLS

2023 Volume 80, Issue 9, Page(s) 273

Abstract: ISG20L2, a 3' to 5' exoribonuclease previously associated with ribosome biogenesis, is identified here in activated T cells as an enzyme with a preferential affinity for uridylated miRNA substrates. This enzyme is upregulated in T lymphocytes upon TCR ... ...

Abstract	ISG20L2, a 3' to 5' exoribonuclease previously associated with ribosome biogenesis, is identified here in activated T cells as an enzyme with a preferential affinity for uridylated miRNA substrates. This enzyme is upregulated in T lymphocytes upon TCR and IFN type I stimulation and appears to be involved in regulating T cell function. ISG20L2 silencing leads to an increased basal expression of CD69 and induces greater IL2 secretion. However, ISG20L2 absence impairs CD25 upregulation, CD3 synaptic accumulation and MTOC translocation towards the antigen-presenting cell during immune synapsis. Remarkably, ISG20L2 controls the expression of immunoregulatory molecules, such as AHR, NKG2D, CTLA-4, CD137, TIM-3, PD-L1 or PD-1, which show increased levels in ISG20L2 knockout T cells. The dysregulation observed in these key molecules for T cell responses support a role for this exonuclease as a novel RNA-based regulator of T cell function.
MeSH term(s)	Antigen-Presenting Cells ; Endonucleases ; Lymphocyte Activation ; MicroRNAs/genetics ; Humans
Chemical Substances	Endonucleases (EC 3.1.-) ; MicroRNAs
Language	English
Publishing date	2023-08-30
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	1358415-7
ISSN	1420-9071 ; 1420-682X
ISSN (online)	1420-9071
ISSN	1420-682X
DOI	10.1007/s00018-023-04925-2
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Article ; Online: Natural killer (NK) cell-derived extracellular-vesicle shuttled microRNAs control T cell responses.

Dosil, Sara G / Lopez-Cobo, Sheila / Rodriguez-Galan, Ana / Fernandez-Delgado, Irene / Ramirez-Huesca, Marta / Milan-Rois, Paula / Castellanos, Milagros / Somoza, Alvaro / Gómez, Manuel José / Reyburn, Hugh T / Vales-Gomez, Mar / Sánchez Madrid, Francisco / Fernandez-Messina, Lola

eLife

2022 Volume 11

Abstract: Natural killer (NK) cells recognize and kill target cells undergoing different types of stress. NK cells are also capable of modulating immune responses. In particular, they regulate T cell functions. Small RNA next-generation sequencing of resting and ... ...

Abstract	Natural killer (NK) cells recognize and kill target cells undergoing different types of stress. NK cells are also capable of modulating immune responses. In particular, they regulate T cell functions. Small RNA next-generation sequencing of resting and activated human NK cells and their secreted extracellular vesicles (EVs) led to the identification of a specific repertoire of NK-EV-associated microRNAs and their post-transcriptional modifications signature. Several microRNAs of NK-EVs, namely miR-10b-5p, miR-92a-3p, and miR-155-5p, specifically target molecules involved in Th1 responses. NK-EVs promote the downregulation of
MeSH term(s)	Animals ; Extracellular Vesicles/metabolism ; Humans ; Killer Cells, Natural/metabolism ; Mice ; MicroRNAs/genetics ; MicroRNAs/metabolism ; RNA, Messenger/metabolism ; T-Lymphocytes/metabolism
Chemical Substances	MicroRNAs ; RNA, Messenger
Language	English
Publishing date	2022-07-29
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2687154-3
ISSN	2050-084X ; 2050-084X
ISSN (online)	2050-084X
ISSN	2050-084X
DOI	10.7554/eLife.76319
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Article ; Online: Telomeres Fuse During Cardiomyocyte Maturation.

Aix, Esther / Gallinat, Alex / Yago-Díez, Carla / Lucas, Javier / Gómez, Manuel José / Benguría, Alberto / Freitag, Patricia / Cortez-Toledo, Elizabeth / Fernández de Manuel, Laura / García-Cuasimodo, Lucía / Sánchez-Iranzo, Héctor / Montoya, María C / Dopazo, Ana / Sánchez-Cabo, Fátima / Mercader, Nadia / López, Javier E / Fleischmann, Bernd K / Hesse, Michael / Flores, Ignacio

Circulation

2023 Volume 147, Issue 21, Page(s) 1634–1636

MeSH term(s)	Humans ; Myocytes, Cardiac ; Cell Proliferation ; Telomere/genetics
Language	English
Publishing date	2023-05-22
Publishing country	United States
Document type	Letter ; Research Support, Non-U.S. Gov't
ZDB-ID	80099-5
ISSN	1524-4539 ; 0009-7322 ; 0069-4193 ; 0065-8499
ISSN (online)	1524-4539
ISSN	0009-7322 ; 0069-4193 ; 0065-8499
DOI	10.1161/CIRCULATIONAHA.122.062229
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Article ; Online: Rescue of Advanced Pompe Disease in Mice with Hepatic Expression of Secretable Acid α-Glucosidase.

Cagin, Umut / Puzzo, Francesco / Gomez, Manuel Jose / Moya-Nilges, Maryse / Sellier, Pauline / Abad, Catalina / Van Wittenberghe, Laetitia / Daniele, Nathalie / Guerchet, Nicolas / Gjata, Bernard / Collaud, Fanny / Charles, Severine / Sola, Marcelo Simon / Boyer, Olivier / Krijnse-Locker, Jacomina / Ronzitti, Giuseppe / Colella, Pasqualina / Mingozzi, Federico

Molecular therapy : the journal of the American Society of Gene Therapy

2020 Volume 28, Issue 9, Page(s) 2056–2072

Abstract: Pompe disease is a neuromuscular disorder caused by disease-associated variants in the gene encoding for the lysosomal enzyme acid α-glucosidase (GAA), which converts lysosomal glycogen to glucose. We previously reported full rescue of Pompe disease in ... ...

Abstract	Pompe disease is a neuromuscular disorder caused by disease-associated variants in the gene encoding for the lysosomal enzyme acid α-glucosidase (GAA), which converts lysosomal glycogen to glucose. We previously reported full rescue of Pompe disease in symptomatic 4-month-old Gaa knockout (Gaa
MeSH term(s)	Animals ; Dependovirus/genetics ; Disease Models, Animal ; Genetic Therapy/methods ; Genetic Vectors/administration & dosage ; Glycogen/metabolism ; Glycogen Storage Disease Type II/genetics ; Glycogen Storage Disease Type II/metabolism ; Glycogen Storage Disease Type II/therapy ; Liver/metabolism ; Lysosomes/metabolism ; Male ; Mice ; Mice, Knockout ; Muscle, Skeletal/metabolism ; Phenotype ; Secretory Pathway/genetics ; Signal Transduction/genetics ; Transcriptome ; Transfection/methods ; Treatment Outcome ; alpha-Glucosidases/genetics ; alpha-Glucosidases/metabolism
Chemical Substances	Glycogen (9005-79-2) ; alpha-Glucosidases (EC 3.2.1.20)
Language	English
Publishing date	2020-05-30
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2010592-7
ISSN	1525-0024 ; 1525-0016
ISSN (online)	1525-0024
ISSN	1525-0016
DOI	10.1016/j.ymthe.2020.05.025
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Article ; Online: Immune synapse instructs epigenomic and transcriptomic functional reprogramming in dendritic cells.

Alcaraz-Serna, Ana / Bustos-Morán, Eugenio / Fernández-Delgado, Irene / Calzada-Fraile, Diego / Torralba, Daniel / Marina-Zárate, Ester / Lorenzo-Vivas, Erika / Vázquez, Enrique / Barreto de Albuquerque, Juliana / Ruef, Nora / Gómez, Manuel José / Sánchez-Cabo, Fátima / Dopazo, Ana / Stein, Jens V / Ramiro, Almudena / Sánchez-Madrid, Francisco

Science advances

2021 Volume 7, Issue 6

Abstract: Understanding the fate of dendritic cells (DCs) after productive immune synapses (postsynaptic DCs) with T cells during antigen presentation has been largely neglected in favor of deciphering the nuances of T cell activation and memory generation. Here, ... ...

Abstract	Understanding the fate of dendritic cells (DCs) after productive immune synapses (postsynaptic DCs) with T cells during antigen presentation has been largely neglected in favor of deciphering the nuances of T cell activation and memory generation. Here, we describe that postsynaptic DCs switch their transcriptomic signature, correlating with epigenomic changes including DNA accessibility and histone methylation. We focus on the chemokine receptor
MeSH term(s)	Cell Movement ; Dendritic Cells ; Epigenomics ; Lymph Nodes ; Receptors, CCR7 ; Synapses ; Transcriptome
Chemical Substances	Receptors, CCR7
Language	English
Publishing date	2021-02-03
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2810933-8
ISSN	2375-2548 ; 2375-2548
ISSN (online)	2375-2548
ISSN	2375-2548
DOI	10.1126/sciadv.abb9965
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Article ; Online: Lateral transfer of the denitrification pathway genes among Thermus thermophilus strains.

Alvarez, Laura / Bricio, Carlos / Gómez, Manuel José / Berenguer, José

Applied and environmental microbiology

2010 Volume 77, Issue 4, Page(s) 1352–1358

Abstract: Nitrate respiration is a common and strain-specific property in Thermus thermophilus encoded by the nitrate respiration conjugative element (NCE) that can be laterally transferred by conjugation. In contrast, nitrite respiration and further ... ...

Abstract	Nitrate respiration is a common and strain-specific property in Thermus thermophilus encoded by the nitrate respiration conjugative element (NCE) that can be laterally transferred by conjugation. In contrast, nitrite respiration and further denitrification steps are restricted to a few isolates of this species. These later steps of the denitrification pathway are under the regulatory control of an NCE-encoded transcription factor, but nothing is known about their coding sequences or its putative genetic linkage to the NCE. In this study we examine the genetic linkage between nitrate and nitrite respiration through lateral gene transfer (LGT) assays and describe a cluster of genes encoding the nitrite-nitric oxide respiration in T. thermophilus PRQ25. We show that the whole denitrification pathway can be transferred from the denitrificant strain PRQ25 to an aerobic strain, HB27, and that the genes coding for nitrite and nitric oxide respiration are encoded near the NCE. Sequence data from the draft genome of PRQ25 confirmed these results and allowed us to describe the most compact nor-nir cluster known thus far and to demonstrate the expression and activities of the encoded enzymes in the HB27 denitrificant derivatives obtained by LGT. We conclude that this NCE nor-nir supercluster constitutes a whole denitrification island that can be spread by lateral transfer among Thermus thermophilus strains.
MeSH term(s)	Base Sequence ; Denitrification/genetics ; Gene Expression ; Gene Expression Regulation, Bacterial ; Gene Transfer, Horizontal ; Genetic Linkage ; Multigene Family ; Nitrate Reductase/chemistry ; Nitrate Reductase/metabolism ; Nitrates/metabolism ; Nitric Oxide/metabolism ; Nitrites/metabolism ; Plasmids ; Polymerase Chain Reaction ; Sequence Analysis, DNA ; Thermus thermophilus/enzymology ; Thermus thermophilus/genetics ; Thermus thermophilus/metabolism
Chemical Substances	Nitrates ; Nitrites ; Nitric Oxide (31C4KY9ESH) ; Nitrate Reductase (EC 1.7.99.4)
Language	English
Publishing date	2010-12-17
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	223011-2
ISSN	1098-5336 ; 0099-2240
ISSN (online)	1098-5336
ISSN	0099-2240
DOI	10.1128/AEM.02048-10
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Article ; Online: Von Hippel-Lindau Protein Is Required for Optimal Alveolar Macrophage Terminal Differentiation, Self-Renewal, and Function.

Izquierdo, Helena M / Brandi, Paola / Gómez, Manuel-José / Conde-Garrosa, Ruth / Priego, Elena / Enamorado, Michel / Martínez-Cano, Sarai / Sánchez, Iria / Conejero, Laura / Jimenez-Carretero, Daniel / Martín-Puig, Silvia / Guilliams, Martin / Sancho, David

Cell reports

2018 Volume 24, Issue 7, Page(s) 1738–1746

Abstract: The rapid transit from hypoxia to normoxia in the lung that follows the first breath in newborn mice coincides with alveolar macrophage (AM) differentiation. However, whether sensing of oxygen affects AM maturation and function has not been previously ... ...

Abstract	The rapid transit from hypoxia to normoxia in the lung that follows the first breath in newborn mice coincides with alveolar macrophage (AM) differentiation. However, whether sensing of oxygen affects AM maturation and function has not been previously explored. We have generated mice whose AMs show a deficient ability to sense oxygen after birth by deleting Vhl, a negative regulator of HIF transcription factors, in the CD11c compartment (CD11cΔVhl mice). VHL-deficient AMs show an immature-like phenotype and an impaired self-renewal capacity in vivo that persists upon culture ex vivo. VHL-deficient phenotype is intrinsic in AMs derived from monocyte precursors in mixed bone marrow chimeras. Moreover, unlike control Vhl
MeSH term(s)	Animals ; Antigens, Differentiation, Myelomonocytic/genetics ; Antigens, Differentiation, Myelomonocytic/metabolism ; Basic Helix-Loop-Helix Transcription Factors/genetics ; Basic Helix-Loop-Helix Transcription Factors/metabolism ; CD11 Antigens/genetics ; CD11 Antigens/metabolism ; CD11b Antigen/genetics ; CD11b Antigen/metabolism ; Cell Differentiation/genetics ; Cell Proliferation/genetics ; Cytokine Receptor Common beta Subunit/deficiency ; Cytokine Receptor Common beta Subunit/genetics ; Gene Deletion ; Gene Expression Regulation ; Humans ; Hypoxia/genetics ; Hypoxia/metabolism ; Hypoxia/pathology ; Hypoxia-Inducible Factor 1, alpha Subunit/genetics ; Hypoxia-Inducible Factor 1, alpha Subunit/metabolism ; Lung/metabolism ; Lung/pathology ; Macrophages, Alveolar/metabolism ; Macrophages, Alveolar/pathology ; Macrophages, Alveolar/transplantation ; Mice ; Mice, Inbred C57BL ; Mice, Knockout ; Oxygen/pharmacology ; Receptors, IgG/genetics ; Receptors, IgG/metabolism ; Signal Transduction ; Von Hippel-Lindau Tumor Suppressor Protein/genetics ; Von Hippel-Lindau Tumor Suppressor Protein/metabolism
Chemical Substances	Antigens, Differentiation, Myelomonocytic ; Basic Helix-Loop-Helix Transcription Factors ; CD11 Antigens ; CD11b Antigen ; Cytokine Receptor Common beta Subunit ; Fcgr1 protein, mouse ; Hif1a protein, mouse ; Hypoxia-Inducible Factor 1, alpha Subunit ; Itgam protein, mouse ; Itgax protein, mouse ; Receptors, IgG ; Siglecf protein, mouse ; Csf2rb protein, mouse (144715-98-0) ; endothelial PAS domain-containing protein 1 (1B37H0967P) ; Von Hippel-Lindau Tumor Suppressor Protein (EC 2.3.2.27) ; VHL protein, mouse (EC 6.3.2.-) ; Oxygen (S88TT14065)
Language	English
Publishing date	2018-08-16
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2649101-1
ISSN	2211-1247 ; 2211-1247
ISSN (online)	2211-1247
ISSN	2211-1247
DOI	10.1016/j.celrep.2018.07.034
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