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Article: Using agro-ecological zones to improve the representation of a multi-environment trial of soybean varieties.

Gilbert, Catherine / Martin, Nicolas

2024 Volume 15, Page(s) 1310461

Abstract: This research introduces a novel framework for enhancing soybean cultivation in North America by categorizing growing environments into distinct ecological and maturity-based zones. Using an integrated analysis of long-term climatic data and records of ... ...

Abstract	This research introduces a novel framework for enhancing soybean cultivation in North America by categorizing growing environments into distinct ecological and maturity-based zones. Using an integrated analysis of long-term climatic data and records of soybean varietal trials, this research generates a zonal environmental characterization which captures major components of the growing environment which affect the range of adaptation of soybean varieties. These findings have immediate applications for optimizing multi-environment soybean trials. This characterization allows breeders to assess the environmental representation of a multi-environmental trial of soybean varieties, and to strategize the distribution of testing and the placement of test sites accordingly. This application is demonstrated with a historical scenario of a soybean multi-environment trial, using two resource allocation models: one targeted towards improving the general adaptation of soybean varieties, which focuses on widely cultivated areas, and one targeted towards specific adaptation, which captures diverse environmental conditions. Ultimately, the study aims to improve the efficiency and impact of soybean breeding programs, leading to the development of cultivars resilient to variable and changing climates.
Language	English
Publishing date	2024-03-25
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	2613694-6
ISSN	1664-462X
ISSN	1664-462X
DOI	10.3389/fpls.2024.1310461
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Article ; Online: Successive Protein Extraction Using Hydroxylamine to Increase the Depth of Proteome Coverage in Fresh, Forensic, and Archaeological Bones.

Gilbert, Catherine / Bathany, Katell / Claverol, Stéphane / Scanvion, Quentin / Hedouin, Valery / Bertrand, Benoit / Tokarski, Caroline

Analytical chemistry

2024 Volume 96, Issue 8, Page(s) 3247–3252

Abstract: Proteomics is continually being applied to a wider range of applications, now including the analysis of archaeological samples and anatomical specimens, particularly collagen-containing tissues such as bones and teeth. Here, we present the application of ...

Abstract	Proteomics is continually being applied to a wider range of applications, now including the analysis of archaeological samples and anatomical specimens, particularly collagen-containing tissues such as bones and teeth. Here, we present the application of a chemical digestion-based proteomics sample preparation protocol to the analysis of fresh, anatomical, and archaeological samples. We describe and discuss two protocols: one that uses hydroxylamine as an additional step of the proteomic workflow, applied to the insoluble fraction, and another that applies hydroxylamine directly on demineralized bones and teeth. We demonstrate the additional information that can be extracted using both protocols, including an increase in the sequence coverage and number of peptides detected in modern and archaeological samples and an increase in the number of proteins identified in archaeological samples. By targeting research related to collagens or extracellular matrix proteins, the use of this protocol will open new insights, considering both fresh and ancient mineralized samples.
MeSH term(s)	Proteome ; Hydroxylamine ; Proteomics/methods ; Bone and Bones ; Hydroxylamines
Chemical Substances	Proteome ; Hydroxylamine (2FP81O2L9Z) ; Hydroxylamines
Language	English
Publishing date	2024-02-13
Publishing country	United States
Document type	Journal Article
ZDB-ID	1508-8
ISSN	1520-6882 ; 0003-2700
ISSN (online)	1520-6882
ISSN	0003-2700
DOI	10.1021/acs.analchem.3c02803
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Article ; Online: Species identification of ivory and bone museum objects using minimally invasive proteomics.

Gilbert, Catherine / Krupicka, Vaclav / Galluzzi, Francesca / Popowich, Aleksandra / Bathany, Katell / Claverol, Stéphane / Arslanoglu, Julie / Tokarski, Caroline

Science advances

2024 Volume 10, Issue 4, Page(s) eadi9028

Abstract: Ivory is a highly prized material in many cultures since it can be carved into intricate designs and have a highly polished surface. Due to its popularity, the animals from which ivory can be sourced are under threat of extinction. Identification of ... ...

Abstract	Ivory is a highly prized material in many cultures since it can be carved into intricate designs and have a highly polished surface. Due to its popularity, the animals from which ivory can be sourced are under threat of extinction. Identification of ivory species is not only important for CITES compliance, it can also provide information about the context in which a work was created. Here, we have developed a minimally invasive workflow to remove minimal amounts of material from precious objects and, using high-resolution mass spectrometry-based proteomics, identified the taxonomy of ivory and bone objects from The Metropolitan Museum of Art collection dating from as early as 4000 B.C. We built a proteomic database of underrepresented species based on exemplars from the American Museum of Natural History, and proposed alternative data analysis workflows for samples containing inconsistently preserved organic material. This application demonstrates extensive ivory species identification using proteomics to unlock sequence uncertainties, e.g., Leu/Ile discrimination.
MeSH term(s)	Animals ; Conservation of Natural Resources ; Museums ; Proteomics ; Bone and Bones ; Mass Spectrometry
Language	English
Publishing date	2024-01-26
Publishing country	United States
Document type	Journal Article
ZDB-ID	2810933-8
ISSN	2375-2548 ; 2375-2548
ISSN (online)	2375-2548
ISSN	2375-2548
DOI	10.1126/sciadv.adi9028
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Article: Dyke-Davidoff-Masson syndrome: Imaging diagnosis in an asymptomatic adult.

Lammle, Markus / Gilbert, Catherine / Nagel, Jorge E / Hagan, Elizabeth A

Radiology case reports

2022 Volume 17, Issue 11, Page(s) 4328–4331

Abstract: Dyke-Davidoff-Masson syndrome (DDMS) was first described in 1933 as a cerebral condition of hemispheric atrophy characterized clinically by contralateral hemiparesis, facial-asymmetry, seizures, and mental retardation. Neuroimaging findings include ... ...

Abstract	Dyke-Davidoff-Masson syndrome (DDMS) was first described in 1933 as a cerebral condition of hemispheric atrophy characterized clinically by contralateral hemiparesis, facial-asymmetry, seizures, and mental retardation. Neuroimaging findings include asymmetric thickening of the calvarium and enlargement of frontal and ethmoid sinuses. There have been 21 reported cases described in the literature with the syndrome undiagnosed until adult age, likely due to less severe or absent clinical findings or symptoms as described in the case presented in this report. This article describes a case where the Dyke-Davidoff-Masson imaging features were identified as an incidental finding on a CT scan of the brain performed for non-seizure related symptoms. A 54-year-old woman presented with weakness and gait difficulty and only upon further evaluation was she found to have cranial deformities. CT and MRI demonstrate encephalomalacia in the right frontal lobe anteriorly with gliosis and moderate unilateral cerebral atrophy, and extensive hypertrophy of the right frontal calvarium, right ethmoid cells and frontal sinuses.
Language	English
Publishing date	2022-09-15
Publishing country	Netherlands
Document type	Case Reports
ZDB-ID	2406300-9
ISSN	1930-0433
ISSN	1930-0433
DOI	10.1016/j.radcr.2022.08.060
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Article ; Online: Novel 3D printable powered air purifying respirator for emergency use during PPE shortage of the COVID-19 pandemic: a study protocol and device safety analysis.

Nagel, Jorge / Gilbert, Catherine / Duchesne, Juan

BMJ open

2021 Volume 11, Issue 8, Page(s) e049605

Abstract: Objectives: To design a low-cost 3D printable powered air-purifying respirator (PAPR) that meets National Institute for Occupational Safety and Health (NIOSH) standard for flow rate and Occupational Safety and Health Administration (OSHA) standard for ... ...

Abstract	Objectives: To design a low-cost 3D printable powered air-purifying respirator (PAPR) that meets National Institute for Occupational Safety and Health (NIOSH) standard for flow rate and Occupational Safety and Health Administration (OSHA) standard for particle filtration for loose-fitting PAPRs and that can be made with a 3D printer and widely available materials. Design: Detailed description of components, assembly instructions and testing of a novel PAPR design in an academic laboratory following respective protocols. The assembled PAPR must meet NIOSH standards of flow rate, 170 L/min; OSHA fit factor for particle filtration, ≥250 and maintain positive pressure during regular and deep breathing. Main outcome measures: The PAPR design was run through a series of tests: air flow (L/min), particle filtration (quantitative and qualitative) and positive pressure measured inside the helmet (mm Hg). Results: Flow rate was 443.32 L/min (NIOSH standard: minimum 170 L/min) and overall fit factor for particle filtration was 1362 (OSHA pass level: ≥500), n=1. The device passed qualitative particle filtration, n=2, and measured peak pressure of 6mm Hg (>0 mm Hg indicates positive pressure) in the helmet, n=1. Conclusions: The Hygieia PAPR is a low-cost, easily accessible, just-in-time 3D printable PAPR design that meets minimum NIOSH and OSHA standards for flow-rate and particle filtration for loose-fitting PAPR devices to be made and used when industry-made designs are unavailable.
MeSH term(s)	COVID-19 ; Equipment Safety ; Humans ; Occupational Exposure ; Pandemics ; Personal Protective Equipment ; Respiratory Protective Devices ; SARS-CoV-2 ; United States
Language	English
Publishing date	2021-08-26
Publishing country	England
Document type	Journal Article
ZDB-ID	2599832-8
ISSN	2044-6055 ; 2044-6055
ISSN (online)	2044-6055
ISSN	2044-6055
DOI	10.1136/bmjopen-2021-049605
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Article ; Online: Commonly used trafficking blocks disrupt ARF1 activation and the localization and function of specific Golgi proteins.

Gilbert, Catherine E / Sztul, Elizabeth / Machamer, Carolyn E

Molecular biology of the cell

2018 Volume 29, Issue 8, Page(s) 937–947

Abstract: Cold temperature blocks used to synchronize protein trafficking inhibit GBF1 function, leading to a decrease in ARF1-GTP levels and mislocalization of the ARF1 effector golgin-160. Several other, but not all, Golgi proteins including ARL1 also ... ...

Abstract	Cold temperature blocks used to synchronize protein trafficking inhibit GBF1 function, leading to a decrease in ARF1-GTP levels and mislocalization of the ARF1 effector golgin-160. Several other, but not all, Golgi proteins including ARL1 also mislocalize. ARF1 activity and golgin-160 localization require more than 30 min to recover from these blocks.
MeSH term(s)	ADP-Ribosylation Factor 1/genetics ; ADP-Ribosylation Factor 1/metabolism ; Autoantigens/genetics ; Autoantigens/metabolism ; Cold Temperature ; Golgi Matrix Proteins/genetics ; Golgi Matrix Proteins/metabolism ; Guanine Nucleotide Exchange Factors/antagonists & inhibitors ; Guanine Nucleotide Exchange Factors/metabolism ; HeLa Cells ; Humans ; Protein Transport ; trans-Golgi Network/metabolism
Chemical Substances	Autoantigens ; GBF1 protein, human ; GOLGA3 protein, human ; Golgi Matrix Proteins ; Guanine Nucleotide Exchange Factors ; ADP-Ribosylation Factor 1 (EC 3.6.5.2)
Language	English
Publishing date	2018-03-30
Publishing country	United States
Document type	Journal Article ; Research Support, N.I.H., Extramural ; Research Support, U.S. Gov't, Non-P.H.S.
ZDB-ID	1098979-1
ISSN	1939-4586 ; 1059-1524
ISSN (online)	1939-4586
ISSN	1059-1524
DOI	10.1091/mbc.E17-11-0622
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Zs.A 2853: Show issues			Location: Je nach Verfügbarkeit (siehe Angabe bei Bestand) bis Jg. 1994: Bestellungen von Artikeln über das Online-Bestellformular Jg. 1995 - 2021: Lesesall (2.OG) ab Jg. 2022: Lesesaal (EG)
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Article ; Online: Understanding Interconnectedness From the Military Nurse Perspective.

Embrey, Katrina / Gilbert, Catherine / Taggart, Helen M

Journal of holistic nursing : official journal of the American Holistic Nurses' Association

2018 Volume 37, Issue 2, Page(s) 113–118

Abstract: Background: Nurses who serve in the military have a unique perspective on nursing and health care delivery that nurtures wholeness and inspires peace and healing on a global scale.: Purpose: The purpose of this study was to explore health promotion ... ...

Abstract	Background: Nurses who serve in the military have a unique perspective on nursing and health care delivery that nurtures wholeness and inspires peace and healing on a global scale. Purpose: The purpose of this study was to explore health promotion and healing from the military nurse perspective. Design: Video-recorded interviews were conducted with 10 military nurses who represented various branches and times of service. Participants were asked to share their experiences as military nurses and discuss the challenges and rewards. Findings: Thematic analysis of the recorded interviews revealed two major themes: interconnectedness and human potential. Conclusion: This study showed that military nurses have unique experiences that influenced their way of promoting health and healing. Interconnectedness with family (personal and military) had many positive and negative factors. Interconnectedness with the health care team was more prominent for the nurses during military service than in the civilian arena. Global interconnectedness included working with teams from around the world, helping children of detainees see that Americans were not evil, and caring for international communities. Military service strengthened the three human qualities of mind, body, and spirit, which resulted in increasing each military nurse's human potential by enabling them to serve as instruments of healing on a global scale.
MeSH term(s)	Health Promotion/methods ; Humans ; Interviews as Topic/methods ; Military Nursing/methods ; Nurse's Role/psychology ; Qualitative Research ; Warfare/psychology
Language	English
Publishing date	2018-08-10
Publishing country	United States
Document type	Journal Article
ZDB-ID	1033534-1
ISSN	1552-5724 ; 0898-0101
ISSN (online)	1552-5724
ISSN	0898-0101
DOI	10.1177/0898010118792137
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Zs.A 2912: Show issues

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Article ; Online: Dynamic modulation of Cyp21a1 (21-hydroxylase) expression sites in the mouse developing lung.

Gilbert, Catherine / Provost, Pierre R / Tremblay, Yves

The Journal of steroid biochemistry and molecular biology

2017 Volume 168, Page(s) 102–109

Abstract: 21-hydroxylase is expressed in the developing lung where it is proposed as a local source of glucocorticoids playing important roles in lung development. We have studied the precise sites of Cyp21a1 expression in the developing mouse lung from the ... ...

Abstract	21-hydroxylase is expressed in the developing lung where it is proposed as a local source of glucocorticoids playing important roles in lung development. We have studied the precise sites of Cyp21a1 expression in the developing mouse lung from the pseudoglandular stage (gestation day (GD) 15.5) to the alveolar stage (postnatal day (PND) 15) by in situ hybridization. Cyp21a1-mRNA was found mainly in epithelial cells from GD 15.5 to PND 5, but the precise site of expression shifted from the distal epithelium during the pseudoglandular and the canalicular stages including the distal epithelium without lumina, to the proximal epithelium and the wall of developing saccules during the perinatal period (GD 19.5 and PND 0), and to the wall of developing saccules and septa, most probably in type I pneumonocytes (PTI), on PND 5. Cyp21a1 expression changed from PTI cells to capillary endothelial cells of the same distal structures during alveolarization. The mesenchyme was generally negative. Endothelial cells forming large vessels were negative. However the tunica adventitia surrounding arteries was Cyp21a1-positive, while several veins were surrounded by a Cyp21a1-positive layer. In conclusion, Cyp21a1 remains expressed in the most distal structure of the developing lung even though these structures are changing, but its expression is not restricted to these areas. Taken together, our data show the highly dynamic modulation of Cyp21a1 expression sites, consistent with the evolving structures of the developing lung.
MeSH term(s)	Alveolar Epithelial Cells/cytology ; Animals ; Desoxycorticosterone/metabolism ; Epithelial Cells/metabolism ; Epithelium/metabolism ; Female ; Gene Expression Profiling ; Gene Expression Regulation, Developmental ; Glucocorticoids/metabolism ; Humans ; In Situ Hybridization ; Lung/embryology ; Male ; Mice ; Mice, Inbred BALB C ; Pulmonary Alveoli/embryology ; Receptors, Glucocorticoid/metabolism ; Steroid 21-Hydroxylase/genetics ; Steroid 21-Hydroxylase/metabolism
Chemical Substances	Glucocorticoids ; Receptors, Glucocorticoid ; Desoxycorticosterone (40GP35YQ49) ; Cyp21a1 protein, mouse (EC 1.14.14.16) ; Steroid 21-Hydroxylase (EC 1.14.14.16)
Language	English
Publishing date	2017-04
Publishing country	England
Document type	Journal Article
ZDB-ID	1049188-0
ISSN	1879-1220 ; 0960-0760
ISSN (online)	1879-1220
ISSN	0960-0760
DOI	10.1016/j.jsbmb.2017.02.009
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Article ; Online: Do Patients With Diabetes Mellitus Want Wearable Technology to Prevent Diabetic Foot Ulcers?

Novice, Taylor / Vemuri, Chandu / Gilbert, Catherine / Fici, Anthony / VanWieren, Elizabeth / Schmidt, Brian M

Journal of diabetes science and technology

2019 Volume 13, Issue 4, Page(s) 799–800

MeSH term(s)	Diabetic Foot/prevention & control ; Female ; Foot Ulcer/etiology ; Foot Ulcer/prevention & control ; Humans ; Male ; Patient Preference ; Surveys and Questionnaires ; Wearable Electronic Devices
Language	English
Publishing date	2019-05-21
Publishing country	United States
Document type	Letter
ISSN	1932-2968
ISSN (online)	1932-2968
DOI	10.1177/1932296819851776
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Article: Sustainable development control? Zoning and land use regulations for urban form, biodiversity conservation and green design in Australia

Gurran, Nicole / Gilbert, Catherine / Phibbs, Peter

Journal of environmental planning and management. 2015 Nov. 2, v. 58, no. 11

2015

Abstract: This paper examines how Australian land use plans incorporate provisions for sustainable urban form, design, biodiversity conservation, and climate change. Despite the long-standing sustainability objectives in state policy frameworks, a survey of 291 ... ...

Abstract	This paper examines how Australian land use plans incorporate provisions for sustainable urban form, design, biodiversity conservation, and climate change. Despite the long-standing sustainability objectives in state policy frameworks, a survey of 291 comprehensive plans finds implementation within local instruments is far from universal. Differences in patterns of policy adoption, as well as potential explanations for these differences, including geographical location, patterns of residential growth, the socio-economic composition of local communities, political forces, and policy evolution over time, are explored. Overall, areas experiencing more intensive growth tend to have newer plans, which in turn, contain more sustainability provisions, suggesting a responsive rather than repressive relationship between development pressures and regulatory development control.
Keywords	biodiversity ; climate change ; design for environment ; forces ; issues and policy ; land use planning ; objectives ; politics ; socioeconomics ; surveys ; sustainable development ; zoning ; Australia
Language	English
Dates of publication	2015-1102
Size	p. 1877-1902.
Publishing place	Routledge
Document type	Article
ZDB-ID	2000921-5
ISSN	1360-0559 ; 0964-0568
ISSN (online)	1360-0559
ISSN	0964-0568
DOI	10.1080/09640568.2014.967386
Database	NAL-Catalogue (AGRICOLA)

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