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  1. Article ; Online: KRAS Secondary Mutations That Confer Acquired Resistance to KRAS G12C Inhibitors, Sotorasib and Adagrasib, and Overcoming Strategies: Insights From In Vitro Experiments.

    Koga, Takamasa / Suda, Kenichi / Fujino, Toshio / Ohara, Shuta / Hamada, Akira / Nishino, Masaya / Chiba, Masato / Shimoji, Masaki / Takemoto, Toshiki / Arita, Takeo / Gmachl, Michael / Hofmann, Marco H / Soh, Junichi / Mitsudomi, Tetsuya

    Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer

    2021  Volume 16, Issue 8, Page(s) 1321–1332

    Abstract: Introduction: KRAS mutations have been recognized as undruggable for many years. Recently, novel KRAS G12C inhibitors, such as sotorasib and adagrasib, are being developed in clinical trials and have revealed promising results in metastatic NSCLC. ... ...

    Abstract Introduction: KRAS mutations have been recognized as undruggable for many years. Recently, novel KRAS G12C inhibitors, such as sotorasib and adagrasib, are being developed in clinical trials and have revealed promising results in metastatic NSCLC. Nevertheless, it is strongly anticipated that acquired resistance will limit their clinical use. In this study, we developed in vitro models of the KRAS G12C cancer, derived from resistant clones against sotorasib and adagrasib, and searched for secondary KRAS mutations as on-target resistance mechanisms to develop possible strategies to overcome such resistance.
    Methods: We chronically exposed Ba/F3 cells transduced with KRAS
    Results: We generated 142 Ba/F3 clones resistant to either sotorasib or adagrasib, of which 124 (87%) harbored secondary KRAS mutations. There were 12 different secondary KRAS mutations. Y96D and Y96S were resistant to both inhibitors. A combination of novel SOS1 inhibitor, BI-3406, and trametinib had potent activity against this resistance. Although G13D, R68M, A59S and A59T, which were highly resistant to sotorasib, remained sensitive to adagrasib, Q99L was resistant to adagrasib but sensitive to sotorasib.
    Conclusions: We identified many secondary KRAS mutations causing resistance to sotorasib, adagrasib, or both, in vitro. The differential activities of these two inhibitors depending on the secondary mutations suggest sequential use in some cases. In addition, switching to BI-3406 plus trametinib might be a useful strategy to overcome acquired resistance owing to the secondary Y96D and Y96S mutations.
    MeSH term(s) Carcinoma, Non-Small-Cell Lung ; Humans ; Lung Neoplasms/drug therapy ; Lung Neoplasms/genetics ; Mutation ; Piperazines ; Proto-Oncogene Proteins p21(ras)/genetics ; Pyridines ; Pyrimidines
    Chemical Substances KRAS protein, human ; Piperazines ; Pyridines ; Pyrimidines ; sotorasib (2B2VM6UC8G) ; Proto-Oncogene Proteins p21(ras) (EC 3.6.5.2)
    Language English
    Publishing date 2021-05-07
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2432037-7
    ISSN 1556-1380 ; 1556-0864
    ISSN (online) 1556-1380
    ISSN 1556-0864
    DOI 10.1016/j.jtho.2021.04.015
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Combined KRAS

    Thatikonda, Venu / Lu, Hengyu / Jurado, Sabine / Kostyrko, Kaja / Bristow, Christopher A / Bosch, Karin / Feng, Ningping / Gao, Sisi / Gerlach, Daniel / Gmachl, Michael / Lieb, Simone / Jeschko, Astrid / Machado, Annette A / Marszalek, Ethan D / Mahendra, Mikhila / Jaeger, Philipp A / Sorokin, Alexey / Strauss, Sandra / Trapani, Francesca /
    Kopetz, Scott / Vellano, Christopher P / Petronczki, Mark / Kraut, Norbert / Heffernan, Timothy P / Marszalek, Joseph R / Pearson, Mark / Waizenegger, Irene / Hofmann, Marco H

    bioRxiv : the preprint server for biology

    2023  

    Abstract: Efforts to improve the anti-tumor response to ... ...

    Abstract Efforts to improve the anti-tumor response to KRAS
    Language English
    Publishing date 2023-01-23
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.01.23.525210
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Fragment Optimization of Reversible Binding to the Switch II Pocket on KRAS Leads to a Potent, In Vivo Active KRAS

    Bröker, Joachim / Waterson, Alex G / Smethurst, Chris / Kessler, Dirk / Böttcher, Jark / Mayer, Moriz / Gmaschitz, Gerhard / Phan, Jason / Little, Andrew / Abbott, Jason R / Sun, Qi / Gmachl, Michael / Rudolph, Dorothea / Arnhof, Heribert / Rumpel, Klaus / Savarese, Fabio / Gerstberger, Thomas / Mischerikow, Nikolai / Treu, Matthias /
    Herdeis, Lorenz / Wunberg, Tobias / Gollner, Andreas / Weinstabl, Harald / Mantoulidis, Andreas / Krämer, Oliver / McConnell, Darryl B / W Fesik, Stephen

    Journal of medicinal chemistry

    2022  Volume 65, Issue 21, Page(s) 14614–14629

    Abstract: Activating mutations in KRAS are the most frequent oncogenic alterations in cancer. The oncogenic hotspot position 12, located at the lip of the switch II pocket, offers a covalent attachment point for ... ...

    Abstract Activating mutations in KRAS are the most frequent oncogenic alterations in cancer. The oncogenic hotspot position 12, located at the lip of the switch II pocket, offers a covalent attachment point for KRAS
    MeSH term(s) Humans ; Proto-Oncogene Proteins p21(ras)/genetics ; Genes, ras ; Mutation ; Neoplasms/genetics ; Cysteine
    Chemical Substances Proto-Oncogene Proteins p21(ras) (EC 3.6.5.2) ; Cysteine (K848JZ4886) ; KRAS protein, human
    Language English
    Publishing date 2022-10-27
    Publishing country United States
    Document type Journal Article ; Research Support, U.S. Gov't, Non-P.H.S. ; Research Support, Non-U.S. Gov't ; Research Support, N.I.H., Extramural
    ZDB-ID 218133-2
    ISSN 1520-4804 ; 0022-2623
    ISSN (online) 1520-4804
    ISSN 0022-2623
    DOI 10.1021/acs.jmedchem.2c01120
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Methods to measure ubiquitin-dependent proteolysis mediated by the anaphase-promoting complex.

    Kraft, Claudine / Gmachl, Michael / Peters, Jan-Michael

    Methods (San Diego, Calif.)

    2006  Volume 38, Issue 1, Page(s) 39–51

    Abstract: The anaphase-promoting complex (APC) or cyclosome is a multi-subunit ubiquitin ligase that controls progression through mitosis and the G1-phase of the cell cycle. The APC ubiquitinates regulatory proteins such as securin and cyclin B and thereby targets ...

    Abstract The anaphase-promoting complex (APC) or cyclosome is a multi-subunit ubiquitin ligase that controls progression through mitosis and the G1-phase of the cell cycle. The APC ubiquitinates regulatory proteins such as securin and cyclin B and thereby targets them for destruction by the 26S proteasome. Activation of the APC depends on the activator proteins Cdc20 and Cdh1, which are thought to recruit substrates to the APC. In vitro, APC's RING finger subunit Apc11 alone can also function as a ubiquitin ligase. Here, we review different methods that have been used to measure the ubiquitination activity of the APC in vitro and to analyze APC-mediated degradation reactions either in vitro or in vivo. We describe procedures to isolate the APC from human cells or from Xenopus eggs, to activate purified APC with recombinant Cdc20 or Cdh1 and to measure the ubiquitination activity of the resulting APC(Cdc20) and APC(Cdh1) complexes. We also describe procedures to analyze the ubiquitination activity associated with recombinant Apc11.
    MeSH term(s) Anaphase-Promoting Complex-Cyclosome ; Animals ; Apc11 Subunit, Anaphase-Promoting Complex-Cyclosome ; Cdc20 Proteins ; Cell Cycle Proteins/biosynthesis ; Cell Cycle Proteins/metabolism ; Cell Extracts ; Electrophoresis, Polyacrylamide Gel ; Female ; HeLa Cells ; Humans ; Immunoprecipitation ; Neoplasm Proteins/isolation & purification ; Nuclear Proteins/isolation & purification ; Protein Processing, Post-Translational ; Proteins/analysis ; Proteins/metabolism ; Recombinant Fusion Proteins/biosynthesis ; Recombinant Fusion Proteins/metabolism ; Ubiquitin-Protein Ligase Complexes/isolation & purification ; Ubiquitin-Protein Ligase Complexes/metabolism ; Ubiquitin-Protein Ligase Complexes/physiology ; Ubiquitins/metabolism ; Xenopus
    Chemical Substances Cdc20 Proteins ; Cell Cycle Proteins ; Cell Extracts ; Neoplasm Proteins ; Nuclear Proteins ; Proteins ; Recombinant Fusion Proteins ; Ubiquitins ; CDC20 protein, human (156288-95-8) ; Ubiquitin-Protein Ligase Complexes (EC 2.3.2.23) ; ANAPC11 protein, human (EC 2.3.2.27) ; Anaphase-Promoting Complex-Cyclosome (EC 2.3.2.27) ; Apc11 Subunit, Anaphase-Promoting Complex-Cyclosome (EC 2.3.2.27)
    Language English
    Publishing date 2006-01
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 1066584-5
    ISSN 1095-9130 ; 1046-2023
    ISSN (online) 1095-9130
    ISSN 1046-2023
    DOI 10.1016/j.ymeth.2005.07.005
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: One Atom Makes All the Difference: Getting a Foot in the Door between SOS1 and KRAS.

    Ramharter, Juergen / Kessler, Dirk / Ettmayer, Peter / Hofmann, Marco H / Gerstberger, Thomas / Gmachl, Michael / Wunberg, Tobias / Kofink, Christiane / Sanderson, Michael / Arnhof, Heribert / Bader, Gerd / Rumpel, Klaus / Zöphel, Andreas / Schnitzer, Renate / Böttcher, Jark / O'Connell, Jonathan C / Mendes, Rachel L / Richard, David / Pototschnig, Nikolai /
    Weiner, Irene / Hela, Wolfgang / Hauer, Katja / Haering, Daniela / Lamarre, Lyne / Wolkerstorfer, Bernhard / Salamon, Christian / Werni, Patrick / Munico-Martinez, Silvia / Meyer, Reiner / Kennedy, Matthew D / Kraut, Norbert / McConnell, Darryl B

    Journal of medicinal chemistry

    2021  Volume 64, Issue 10, Page(s) 6569–6580

    Abstract: KRAS, the most common oncogenic driver in human cancers, is controlled and signals primarily through protein-protein interactions (PPIs). The interaction between KRAS and SOS1, crucial for the activation of KRAS, is a typical, challenging PPI with a ... ...

    Abstract KRAS, the most common oncogenic driver in human cancers, is controlled and signals primarily through protein-protein interactions (PPIs). The interaction between KRAS and SOS1, crucial for the activation of KRAS, is a typical, challenging PPI with a large contact surface area and high affinity. Here, we report that the addition of only one atom placed between Y884
    MeSH term(s) Afatinib/chemistry ; Afatinib/metabolism ; Afatinib/therapeutic use ; Allosteric Regulation/drug effects ; Binding Sites ; Catalytic Domain ; Colorectal Neoplasms/drug therapy ; Colorectal Neoplasms/pathology ; ErbB Receptors/antagonists & inhibitors ; ErbB Receptors/metabolism ; Humans ; Molecular Dynamics Simulation ; Mutagenesis, Site-Directed ; Protein Interaction Maps/drug effects ; Proto-Oncogene Proteins p21(ras)/antagonists & inhibitors ; Proto-Oncogene Proteins p21(ras)/genetics ; Proto-Oncogene Proteins p21(ras)/metabolism ; Quinazolines/chemistry ; Quinazolines/metabolism ; Quinazolines/pharmacology ; Quinazolines/therapeutic use ; SOS1 Protein/agonists ; SOS1 Protein/antagonists & inhibitors ; SOS1 Protein/genetics ; SOS1 Protein/metabolism
    Chemical Substances KRAS protein, human ; Quinazolines ; SOS1 Protein ; quinazolin-4-amine ; Afatinib (41UD74L59M) ; EGFR protein, human (EC 2.7.10.1) ; ErbB Receptors (EC 2.7.10.1) ; Proto-Oncogene Proteins p21(ras) (EC 3.6.5.2)
    Language English
    Publishing date 2021-03-15
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 218133-2
    ISSN 1520-4804 ; 0022-2623
    ISSN (online) 1520-4804
    ISSN 0022-2623
    DOI 10.1021/acs.jmedchem.0c01949
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: BI-3406, a Potent and Selective SOS1-KRAS Interaction Inhibitor, Is Effective in KRAS-Driven Cancers through Combined MEK Inhibition.

    Hofmann, Marco H / Gmachl, Michael / Ramharter, Juergen / Savarese, Fabio / Gerlach, Daniel / Marszalek, Joseph R / Sanderson, Michael P / Kessler, Dirk / Trapani, Francesca / Arnhof, Heribert / Rumpel, Klaus / Botesteanu, Dana-Adriana / Ettmayer, Peter / Gerstberger, Thomas / Kofink, Christiane / Wunberg, Tobias / Zoephel, Andreas / Fu, Szu-Chin / Teh, Jessica L /
    Böttcher, Jark / Pototschnig, Nikolai / Schachinger, Franziska / Schipany, Katharina / Lieb, Simone / Vellano, Christopher P / O'Connell, Jonathan C / Mendes, Rachel L / Moll, Jurgen / Petronczki, Mark / Heffernan, Timothy P / Pearson, Mark / McConnell, Darryl B / Kraut, Norbert

    Cancer discovery

    2020  Volume 11, Issue 1, Page(s) 142–157

    Abstract: ... ...

    Abstract KRAS
    MeSH term(s) Cell Line, Tumor ; Humans ; Lung Neoplasms ; Mitogen-Activated Protein Kinase Kinases ; Mutation ; Nucleotides ; Protein Kinase Inhibitors/pharmacology ; Proto-Oncogene Proteins p21(ras)/genetics
    Chemical Substances KRAS protein, human ; Nucleotides ; Protein Kinase Inhibitors ; Mitogen-Activated Protein Kinase Kinases (EC 2.7.12.2) ; Proto-Oncogene Proteins p21(ras) (EC 3.6.5.2)
    Language English
    Publishing date 2020-08-19
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Comment
    ZDB-ID 2625242-9
    ISSN 2159-8290 ; 2159-8274
    ISSN (online) 2159-8290
    ISSN 2159-8274
    DOI 10.1158/2159-8290.CD-20-0142
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Tumor cell-specific inhibition of MYC function using small molecule inhibitors of the HUWE1 ubiquitin ligase.

    Peter, Stefanie / Bultinck, Jennyfer / Myant, Kevin / Jaenicke, Laura A / Walz, Susanne / Müller, Judith / Gmachl, Michael / Treu, Matthias / Boehmelt, Guido / Ade, Carsten P / Schmitz, Werner / Wiegering, Armin / Otto, Christoph / Popov, Nikita / Sansom, Owen / Kraut, Norbert / Eilers, Martin

    EMBO molecular medicine

    2014  Volume 6, Issue 12, Page(s) 1525–1541

    Abstract: Deregulated expression of MYC is a driver of colorectal carcinogenesis, necessitating novel strategies to inhibit MYC function. The ubiquitin ligase HUWE1 (HECTH9, ARF-BP1, MULE) associates with both MYC and the MYC-associated protein MIZ1. We show here ... ...

    Abstract Deregulated expression of MYC is a driver of colorectal carcinogenesis, necessitating novel strategies to inhibit MYC function. The ubiquitin ligase HUWE1 (HECTH9, ARF-BP1, MULE) associates with both MYC and the MYC-associated protein MIZ1. We show here that HUWE1 is required for growth of colorectal cancer cells in culture and in orthotopic xenograft models. Using high-throughput screening, we identify small molecule inhibitors of HUWE1, which inhibit MYC-dependent transactivation in colorectal cancer cells, but not in stem and normal colon epithelial cells. Inhibition of HUWE1 stabilizes MIZ1. MIZ1 globally accumulates on MYC target genes and contributes to repression of MYC-activated target genes upon HUWE1 inhibition. Our data show that transcriptional activation by MYC in colon cancer cells requires the continuous degradation of MIZ1 and identify a novel principle that allows for inhibition of MYC function in tumor cells.
    MeSH term(s) Animals ; Cell Line, Tumor ; Cell Proliferation ; Colorectal Neoplasms/drug therapy ; Colorectal Neoplasms/enzymology ; Colorectal Neoplasms/genetics ; Colorectal Neoplasms/physiopathology ; Gene Expression Regulation, Neoplastic ; Humans ; Kruppel-Like Transcription Factors/genetics ; Kruppel-Like Transcription Factors/metabolism ; Mice ; Mice, SCID ; Oncogene Protein p55(v-myc)/antagonists & inhibitors ; Oncogene Protein p55(v-myc)/genetics ; Oncogene Protein p55(v-myc)/metabolism ; Protein Binding ; Small Molecule Libraries/administration & dosage ; Small Molecule Libraries/pharmacology ; Transcriptional Activation ; Tumor Suppressor Proteins ; Ubiquitin-Protein Ligases/antagonists & inhibitors ; Ubiquitin-Protein Ligases/genetics ; Ubiquitin-Protein Ligases/metabolism
    Chemical Substances Kruppel-Like Transcription Factors ; Oncogene Protein p55(v-myc) ; Small Molecule Libraries ; Tumor Suppressor Proteins ; ZBTB17 protein, human ; HUWE1 protein, human (EC 2.3.2.26) ; Ubiquitin-Protein Ligases (EC 2.3.2.27)
    Language English
    Publishing date 2014-09-24
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2467145-9
    ISSN 1757-4684 ; 1757-4676
    ISSN (online) 1757-4684
    ISSN 1757-4676
    DOI 10.15252/emmm.201403927
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Reply to Tran et al.: Dimeric KRAS protein-protein interaction stabilizers.

    Kessler, Dirk / Gollner, Andreas / Gmachl, Michael / Mantoulidis, Andreas / Martin, Laetitia J / Zoephel, Andreas / Mayer, Moriz / Covini, David / Fischer, Silke / Gerstberger, Thomas / Gmaschitz, Teresa / Goodwin, Craig / Greb, Peter / Häring, Daniela / Hela, Wolfgang / Hoffmann, Johann / Karolyi-Oezguer, Jale / Knesl, Petr / Kornigg, Stefan /
    Koegl, Manfred / Kousek, Roland / Lamarre, Lyne / Moser, Franziska / Munico-Martinez, Silvia / Peinsipp, Christoph / Phan, Jason / Rinnenthal, Jörg / Sai, Jiqing / Salamon, Christian / Scherbantin, Yvonne / Schipany, Katharina / Schnitzer, Renate / Schrenk, Andreas / Sharps, Bernadette / Siszler, Gabriella / Sun, Qi / Waterson, Alex / Wolkerstorfer, Bernhard / Zeeb, Markus / Pearson, Mark / Fesik, Stephen W / McConnell, Darryl B

    Proceedings of the National Academy of Sciences of the United States of America

    2020  Volume 117, Issue 7, Page(s) 3365–3367

    MeSH term(s) Proto-Oncogene Proteins p21(ras)
    Chemical Substances Proto-Oncogene Proteins p21(ras) (EC 3.6.5.2)
    Language English
    Publishing date 2020-02-11
    Publishing country United States
    Document type Letter ; Comment
    ZDB-ID 209104-5
    ISSN 1091-6490 ; 0027-8424
    ISSN (online) 1091-6490
    ISSN 0027-8424
    DOI 10.1073/pnas.1921236117
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Drugging an undruggable pocket on KRAS.

    Kessler, Dirk / Gmachl, Michael / Mantoulidis, Andreas / Martin, Laetitia J / Zoephel, Andreas / Mayer, Moriz / Gollner, Andreas / Covini, David / Fischer, Silke / Gerstberger, Thomas / Gmaschitz, Teresa / Goodwin, Craig / Greb, Peter / Häring, Daniela / Hela, Wolfgang / Hoffmann, Johann / Karolyi-Oezguer, Jale / Knesl, Petr / Kornigg, Stefan /
    Koegl, Manfred / Kousek, Roland / Lamarre, Lyne / Moser, Franziska / Munico-Martinez, Silvia / Peinsipp, Christoph / Phan, Jason / Rinnenthal, Jörg / Sai, Jiqing / Salamon, Christian / Scherbantin, Yvonne / Schipany, Katharina / Schnitzer, Renate / Schrenk, Andreas / Sharps, Bernadette / Siszler, Gabriella / Sun, Qi / Waterson, Alex / Wolkerstorfer, Bernhard / Zeeb, Markus / Pearson, Mark / Fesik, Stephen W / McConnell, Darryl B

    Proceedings of the National Academy of Sciences of the United States of America

    2019  Volume 116, Issue 32, Page(s) 15823–15829

    Abstract: The 3 human RAS genes, KRAS, NRAS, and HRAS, encode 4 different RAS proteins which belong to the protein family of small GTPases that function as binary molecular switches involved in cell signaling. Activating mutations in RAS are among the most common ... ...

    Abstract The 3 human RAS genes, KRAS, NRAS, and HRAS, encode 4 different RAS proteins which belong to the protein family of small GTPases that function as binary molecular switches involved in cell signaling. Activating mutations in RAS are among the most common oncogenic drivers in human cancers, with KRAS being the most frequently mutated oncogene. Although KRAS is an excellent drug discovery target for many cancers, and despite decades of research, no therapeutic agent directly targeting RAS has been clinically approved. Using structure-based drug design, we have discovered BI-2852 (1), a KRAS inhibitor that binds with nanomolar affinity to a pocket, thus far perceived to be "undruggable," between switch I and II on RAS; 1 is mechanistically distinct from covalent KRAS
    MeSH term(s) Drug Discovery ; Guanosine Triphosphate/metabolism ; Humans ; Models, Molecular ; Nanoparticles/chemistry ; Pharmaceutical Preparations/chemistry ; Proto-Oncogene Proteins p21(ras)/chemistry
    Chemical Substances KRAS protein, human ; Pharmaceutical Preparations ; Guanosine Triphosphate (86-01-1) ; Proto-Oncogene Proteins p21(ras) (EC 3.6.5.2)
    Language English
    Publishing date 2019-07-22
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 209104-5
    ISSN 1091-6490 ; 0027-8424
    ISSN (online) 1091-6490
    ISSN 0027-8424
    DOI 10.1073/pnas.1904529116
    Database MEDical Literature Analysis and Retrieval System OnLINE

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