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  1. Article ; Online: Density‐dependent and independent mechanisms jointly reduce species performance under nitrogen enrichment

    Issaka, David Sampson / Gross, Or / Ayilara, Itunuoluwa / Schabes, Tal / DeMalach, Niv

    Oikos. 2023 July, v. 2023, no. 7 p.e09838-

    2023  

    Abstract: Nitrogen (N) deposition is a primary driver of species loss in plant communities globally. However, the mechanisms by which high N availability causes species loss remain unclear. Many hypotheses for species loss with increasing N availability highlight ... ...

    Abstract Nitrogen (N) deposition is a primary driver of species loss in plant communities globally. However, the mechanisms by which high N availability causes species loss remain unclear. Many hypotheses for species loss with increasing N availability highlight density‐dependent mechanisms, i.e. changes in species interactions. However, an alternative set of hypotheses highlights density‐independent detrimental effects of nitrogen (e.g. N toxicity). We tested the role of density‐dependent and density‐independent mechanisms in reducing species performance. For this aim, we used 120 experimental plant communities (mesocosms) comprised of annual species growing together in containers under four fertilization treatments: 1) no nutrient addition (control), 2) all nutrients except N (P, K, and micronutrients), 3) low N (3 gN m⁻²) + other nutrients, and 4) high N (15 gN m⁻²) + other nutrients. Each fertilization treatment included two sowing densities to differentiate between the effects of competition (N × density interactions) and other detrimental effects of N. We focused on three performance attributes: the probability of reaching the reproduction period, biomass growth, and population growth. We found that individual biomass and population growth rates decreased with increasing sowing density in all nutrient treatments, implying that species interactions were predominantly negative. The common grass Avena barbata had a higher biomass and population growth under N enrichment, regardless of sowing density. In contrast, the legume Trifolium purpureum showed a density‐independent reduction in biomass growth with increasing N. Lastly, the small forb Silene palaestina showed a density‐dependent reduction in population growth, i.e. the decline occurred only under high density. Our results demonstrate that density‐dependent and density‐independent mechanisms operate simultaneously to reduce species performance under high N availability. Yet, their relative importance varies among species and life stages.
    Keywords Avena barbata ; Silene ; Trifolium ; biomass ; forbs ; grasses ; legumes ; nitrogen ; population growth ; probability ; reproduction ; toxicity
    Language English
    Dates of publication 2023-07
    Publishing place Blackwell Publishing Ltd
    Document type Article ; Online
    Note JOURNAL ARTICLE
    ZDB-ID 207359-6
    ISSN 0030-1299
    ISSN 0030-1299
    DOI 10.1111/oik.09838
    Database NAL-Catalogue (AGRICOLA)

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  2. Book ; Online: Density-dependent and independent mechanisms jointly reduce species performance under nitrogen enrichment

    Issaka, David Sampson / Gross, Or / Ayilara, Itunuoluwa / Schabes, Talia / DeMalach, Niv

    2023  

    Abstract: Nitrogen (N) deposition is a primary driver of species loss in plant communities globally. However, the mechanisms by which high N availability causes species loss remain unclear. Many hypotheses for species loss with increasing N availability highlight ... ...

    Abstract Nitrogen (N) deposition is a primary driver of species loss in plant communities globally. However, the mechanisms by which high N availability causes species loss remain unclear. Many hypotheses for species loss with increasing N availability highlight density-dependent mechanisms, i.e., changes in species interactions. However, an alternative set of hypotheses highlights density-independent detrimental effects of nitrogen (e.g., N toxicity). We tested the role of density-dependent and density-independent mechanisms in reducing species performance. For this aim, we used 120 experimental plant communities comprised of annual species growing together in containers under four fertilization treatments: (1) no nutrient addition(, (2) all nutrients except N (P, K, and micronutrients), (3) Low N, and (4) high N. Each fertilization treatment included two sowing densities to differentiate between the effects of competition (N * density interactions) and other detrimental effects of N. We focused on three performance attributes: the probability of reaching the reproduction period, biomass growth, and population growth. We found that individual biomass and population growth rates decreased with increasing sowing density in all nutrient treatments, implying that species interactions were predominantly negative. The common grass had a higher biomass and population growth under N enrichment, regardless of sowing density. In contrast, the legume showed a density-independent reduction in biomass growth with increasing N. Lastly, the small forb showed a density-dependent reduction in population growth, i.e., the decline occurred only under high density. Our results demonstrate that density-dependent and density-independent mechanisms operate simultaneously to reduce species performance under high N availability. Yet, their relative importance varies among species and life stages.
    Keywords Quantitative Biology - Populations and Evolution
    Subject code 580 ; 590
    Publishing date 2023-01-02
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: CRISPR/Cas9-induced DNA breaks trigger crossover, chromosomal loss, and chromothripsis-like rearrangements.

    Samach, Aviva / Mafessoni, Fabrizio / Gross, Or / Melamed-Bessudo, Cathy / Filler-Hayut, Shdema / Dahan-Meir, Tal / Amsellem, Ziva / Pawlowski, Wojciech P / Levy, Avraham A

    The Plant cell

    2023  Volume 35, Issue 11, Page(s) 3957–3972

    Abstract: DNA double-stranded breaks (DSBs) generated by the Cas9 nuclease are commonly repaired via nonhomologous end-joining (NHEJ) or homologous recombination (HR). However, little is known about unrepaired DSBs and the type of damage they trigger in plants. We ...

    Abstract DNA double-stranded breaks (DSBs) generated by the Cas9 nuclease are commonly repaired via nonhomologous end-joining (NHEJ) or homologous recombination (HR). However, little is known about unrepaired DSBs and the type of damage they trigger in plants. We designed an assay that detects loss of heterozygosity (LOH) in somatic cells, enabling the study of a broad range of DSB-induced genomic events. The system relies on a mapped phenotypic marker which produces a light purple color (betalain pigment) in all plant tissues. Plants with sectors lacking the Betalain marker upon DSB induction between the marker and the centromere were tested for LOH events. Using this assay, we detected a tomato (Solanum lycopersicum) flower with a twin yellow and dark purple sector, corresponding to a germinally transmitted somatic crossover event. We also identified instances of small deletions of genomic regions spanning the T-DNA and whole chromosome loss. In addition, we show that major chromosomal rearrangements including loss of large fragments, inversions, and translocations were clearly associated with the CRISPR-induced DSB. Detailed characterization of complex rearrangements by whole-genome sequencing and molecular and cytological analyses supports a model in which a breakage-fusion-bridge cycle followed by chromothripsis-like rearrangements had been induced. Our LOH assay provides a tool for precise breeding via targeted crossover detection. It also uncovers CRISPR-mediated chromothripsis-like events in plants.
    MeSH term(s) Chromothripsis ; CRISPR-Cas Systems/genetics ; DNA Breaks, Double-Stranded ; DNA End-Joining Repair ; Homologous Recombination ; Solanum lycopersicum/genetics
    Language English
    Publishing date 2023-07-27
    Publishing country England
    Document type Journal Article
    ZDB-ID 623171-8
    ISSN 1532-298X ; 1040-4651
    ISSN (online) 1532-298X
    ISSN 1040-4651
    DOI 10.1093/plcell/koad209
    Database MEDical Literature Analysis and Retrieval System OnLINE

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