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  1. Article ; Online: Readiness for Artificial Intelligence in Biobanking.

    Grossman, Gregory H / Henderson, Marianne K

    Biopreservation and biobanking

    2023  Volume 21, Issue 2, Page(s) 119–120

    MeSH term(s) Artificial Intelligence ; Biological Specimen Banks
    Language English
    Publishing date 2023-04-19
    Publishing country United States
    Document type Editorial
    ZDB-ID 2593993-2
    ISSN 1947-5543 ; 1947-5535
    ISSN (online) 1947-5543
    ISSN 1947-5535
    DOI 10.1089/bio.2023.29121.editorial
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Ex Vivo OCT-Based Multimodal Imaging of Human Donor Eyes for Research into Age-Related Macular Degeneration.

    Messinger, Jeffrey D / Brinkmann, Max / Kimble, James A / Berlin, Andreas / Freund, K Bailey / Grossman, Gregory H / Ach, Thomas / Curcio, Christine A

    Journal of visualized experiments : JoVE

    2023  , Issue 195

    Abstract: A progression sequence for age-related macular degeneration (AMD) learned from optical coherence tomography (OCT)-based multimodal (MMI) clinical imaging could add prognostic value to laboratory findings. In this work, ex vivo OCT and MMI were applied to ...

    Abstract A progression sequence for age-related macular degeneration (AMD) learned from optical coherence tomography (OCT)-based multimodal (MMI) clinical imaging could add prognostic value to laboratory findings. In this work, ex vivo OCT and MMI were applied to human donor eyes prior to retinal tissue sectioning. The eyes were recovered from non-diabetic white donors aged ≥80 years old, with a death-to-preservation time (DtoP) of ≤6 h. The globes were recovered on-site, scored with an 18 mm trephine to facilitate cornea removal, and immersed in buffered 4% paraformaldehyde. Color fundus images were acquired after anterior segment removal with a dissecting scope and an SLR camera using trans-, epi-, and flash illumination at three magnifications. The globes were placed in a buffer within a custom-designed chamber with a 60 diopter lens. They were imaged with spectral domain OCT (30° macula cube, 30 µm spacing, averaging = 25), near-infrared reflectance, 488 nm autofluorescence, and 787 nm autofluorescence. The AMD eyes showed a change in the retinal pigment epithelium (RPE), with drusen or subretinal drusenoid deposits (SDDs), with or without neovascularization, and without evidence of other causes. Between June 2016 and September 2017, 94 right eyes and 90 left eyes were recovered (DtoP: 3.9 ± 1.0 h). Of the 184 eyes, 40.2% had AMD, including early intermediate (22.8%), atrophic (7.6%), and neovascular (9.8%) AMD, and 39.7% had unremarkable maculas. Drusen, SDDs, hyper-reflective foci, atrophy, and fibrovascular scars were identified using OCT. Artifacts included tissue opacification, detachments (bacillary, retinal, RPE, choroidal), foveal cystic change, an undulating RPE, and mechanical damage. To guide the cryo-sectioning, OCT volumes were used to find the fovea and optic nerve head landmarks and specific pathologies. The ex vivo volumes were registered with the in vivo volumes by selecting the reference function for eye tracking. The ex vivo visibility of the pathology seen in vivo depends on the preservation quality. Within 16 months, 75 rapid DtoP donor eyes at all stages of AMD were recovered and staged using clinical MMI methods.
    MeSH term(s) Humans ; Aged, 80 and over ; Tomography, Optical Coherence ; Macular Degeneration ; Retina ; Multimodal Imaging
    Chemical Substances SDDS (17615-73-5)
    Language English
    Publishing date 2023-05-26
    Publishing country United States
    Document type Journal Article ; Video-Audio Media ; Research Support, Non-U.S. Gov't ; Research Support, N.I.H., Extramural
    ZDB-ID 2259946-0
    ISSN 1940-087X ; 1940-087X
    ISSN (online) 1940-087X
    ISSN 1940-087X
    DOI 10.3791/65240
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Updating International Society for Biological and Environmental Repositories Best Practices, Fifth Edition: A New Process for Relevance in an Evolving Landscape.

    Snapes, Emma / Astrin, Jonas J / Bertheussen Krüger, Nina / Grossman, Gregory H / Hendrickson, Ellen / Miller, Nicola / Seiler, Cathy

    Biopreservation and biobanking

    2023  Volume 21, Issue 6, Page(s) 537–546

    Abstract: The recently published fifth edition of the International Society for Biological and Environmental Repositories (ISBER) Best Practices signifies a pivotal milestone in navigating the complexities of repository management. Repositories operate within a ... ...

    Abstract The recently published fifth edition of the International Society for Biological and Environmental Repositories (ISBER) Best Practices signifies a pivotal milestone in navigating the complexities of repository management. Repositories operate within a constantly evolving landscape influenced by the changing fields of biospecimen science, technology, legal requirements, and ethical considerations. This dynamic is further amplified by unprecedented local and global challenges, such as pandemics, conflicts, and supply chain disruptions. Creating this new edition required a comprehensive approach capable of delivering a focused and coherent resource reflecting the broad horizon of its diverse users. The innovative approach used the existing phased development process and integrated the canvassing of opinions, formal evaluation, and real-time collaboration platforms. Merging these techniques enabled efficient collection and effective distillation of the latest in biobanking practices, enhancing the value of the fifth edition for repositories of specimens and associated data. The expanded document is a testament to the collective efforts of many dedicated individuals who have built upon the foundations of prior editions.
    MeSH term(s) Humans ; Biological Specimen Banks ; Pandemics
    Language English
    Publishing date 2023-12-27
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 2593993-2
    ISSN 1947-5543 ; 1947-5535
    ISSN (online) 1947-5543
    ISSN 1947-5535
    DOI 10.1089/bio.2023.0140
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Cost-Benefit and Cost-Utility Analysis of Amphotericin B Supplementation of Corneal Storage Media With Endothelial Keratoplasty-Prepared Tissue.

    Chiang, Trent Tsun-Kang / Shtein, Roni M / McCoy, Kristen / Hurlbert, Susan / Grossman, Gregory H

    Cornea

    2020  Volume 39, Issue 4, Page(s) 422–430

    Abstract: Purpose: To determine the cost-effectiveness of amphotericin B supplementation, we analyzed both current costs to treat postendothelial keratoplasty (EK) fungal infections and potential costs associated with amphotericin B supplementation.: Methods: ... ...

    Abstract Purpose: To determine the cost-effectiveness of amphotericin B supplementation, we analyzed both current costs to treat postendothelial keratoplasty (EK) fungal infections and potential costs associated with amphotericin B supplementation.
    Methods: We collected 19 US cases of post-EK fungal eye infections from the published literature and assessed the associated costs from the literature. A survey of surgeons was also conducted with questions regarding their experiences in managing these infections.
    Results: We estimated that the costs to diagnose, manage, and treat post-EK fungal keratitis and post-EK fungal endophthalmitis are USD $21,113 and $34,850, respectively. The largest portion of the costs can be attributed to the need for additional surgical management, which is required in 79% of the cases. We estimated the total cost of amphotericin B supplementation to be $44.39 per graft with use of conventional amphotericin B and conservative assumptions regarding supplementation processes. Cost-effectiveness analysis demonstrated that amphotericin B supplementation is cost-effective at $100,000 per quality-adjusted life-year level only if amphotericin B supplementation can prevent more than 69.62% of post-EK fungal infections, assuming the incidence of post-EK fungal infection remains at the level it was between 2012 and 2017.
    Conclusions: We found that amphotericin B supplementation can be cost-effective under conservative assumptions if it is moderately effective in preventing post-EK fungal infections.
    MeSH term(s) Administration, Oral ; Amphotericin B/administration & dosage ; Antifungal Agents/administration & dosage ; Corneal Transplantation/methods ; Cost-Benefit Analysis ; Endothelium, Corneal/cytology ; Endothelium, Corneal/transplantation ; Eye Infections, Fungal/drug therapy ; Eye Infections, Fungal/economics ; Humans ; Mycoses/drug therapy ; Mycoses/economics ; Organ Preservation/methods
    Chemical Substances Antifungal Agents ; Amphotericin B (7XU7A7DROE)
    Language English
    Publishing date 2020-01-23
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 604826-2
    ISSN 1536-4798 ; 0277-3740
    ISSN (online) 1536-4798
    ISSN 0277-3740
    DOI 10.1097/ICO.0000000000002242
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Donor cornea tissue in cases of drowning or water submersion: eye banks practice patterns and tissue outcomes.

    Vijayakumar, Nithya P / Parikh, Purak / Mian, Shahzad I / Tennant, Brad / Grossman, Gregory H / Albrecht, Bob / Niziol, Leslie M / Woodward, Maria A

    Cell and tissue banking

    2017  Volume 19, Issue 1, Page(s) 1–8

    Abstract: Surgical use of donor corneal tissue from victims of water submersion (drowning or submersion secondary to death) remains controversial due to limited evidence about the quality of these tissues. To assess the safety of donor corneal tissue from victims ... ...

    Abstract Surgical use of donor corneal tissue from victims of water submersion (drowning or submersion secondary to death) remains controversial due to limited evidence about the quality of these tissues. To assess the safety of donor corneal tissue from victims of water submersion, an investigation of eye banks' practice patterns and tissue outcomes was conducted. All 79 Eye Bank Association of America accredited eye banks were contacted for a phone interview of practices regarding tissue from victims of water submersion. A retrospective review of corneal tissues from 2014 to 2016 from a large eye bank network was performed to identify all donors submerged in water. Corneal epithelial integrity, endothelial cell density (ECD), rim cultures, and adverse events were analyzed for associations with water submersion characteristics. 49 eye banks (62% response) participated in the survey. 55% of these eye banks had specific, written protocol for tissue eligibility from donors submerged in water. With or without specific protocol, eye banks reported considering water type (84%) and length of time submerged (92%) to determine eligibility. 22% of eye banks reported medical director involvement when eligibility determination was unclear. 79 tissues from 40 donors who were submerged were identified in 2014-2016 eye bank data. No donor tissues had pre-processing corneal infiltrates, positive rim cultures, or adverse events post-keratoplasty. Corneal epithelial integrity and ECD were not associated with water type or length of time submerged. In conclusion, data from a large eye bank network showed no adverse events or outcomes, indicating these tissues may be safe.
    MeSH term(s) Adolescent ; Adult ; Aged ; Aged, 80 and over ; Cause of Death ; Child ; Cornea/cytology ; Corneal Transplantation/adverse effects ; Corneal Transplantation/methods ; Corneal Transplantation/statistics & numerical data ; Drowning ; Eye Banks/methods ; Eye Banks/statistics & numerical data ; Female ; Humans ; Male ; Middle Aged ; Tissue Donors/statistics & numerical data ; Young Adult
    Language English
    Publishing date 2017-10-25
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2170897-6
    ISSN 1573-6814 ; 1389-9333
    ISSN (online) 1573-6814
    ISSN 1389-9333
    DOI 10.1007/s10561-017-9671-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Isolating photoreceptor compartment-specific protein complexes for subsequent proteomic analysis.

    Grossman, Gregory H / Pauer, Gayle J T / Hoppe, George / Hagstrom, Stephanie A

    Advances in experimental medicine and biology

    2012  Volume 723, Page(s) 701–707

    MeSH term(s) Animals ; Cell Compartmentation/physiology ; Eye Proteins/genetics ; Eye Proteins/isolation & purification ; Eye Proteins/metabolism ; Laser Capture Microdissection/methods ; Mice ; Mice, Mutant Strains ; Photoreceptor Cells, Vertebrate/metabolism ; Photoreceptor Cells, Vertebrate/ultrastructure ; Protein Transport/physiology ; Proteomics/methods ; Retinal Degeneration/metabolism ; Retinal Degeneration/pathology ; Rhodopsin/isolation & purification ; Rhodopsin/metabolism
    Chemical Substances Eye Proteins ; Tulp1 protein, mouse ; Rhodopsin (9009-81-8)
    Language English
    Publishing date 2012
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ISSN 2214-8019 ; 0065-2598
    ISSN (online) 2214-8019
    ISSN 0065-2598
    DOI 10.1007/978-1-4614-0631-0_89
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Interaction of tubby-like protein-1 (Tulp1) and microtubule-associated protein (MAP) 1A and MAP1B in the mouse retina.

    Grossman, Gregory H / Beight, Craig D / Ebke, Lindsey A / Pauer, Gayle J T / Hagstrom, Stephanie A

    Advances in experimental medicine and biology

    2014  Volume 801, Page(s) 511–518

    Abstract: Tubby-like protein-1 (Tulp1) is a photoreceptor-specific protein involved in the transport of specific proteins from the inner segment (IS) to the outer segment (OS) in photoreceptor cells. Mutations in the human TULP1 gene cause an early onset form of ... ...

    Abstract Tubby-like protein-1 (Tulp1) is a photoreceptor-specific protein involved in the transport of specific proteins from the inner segment (IS) to the outer segment (OS) in photoreceptor cells. Mutations in the human TULP1 gene cause an early onset form of retinitis pigmentosa. Our previous work has shown an association between Tulp1 and the microtubule-associated protein, MAP1B. An allele of Mtap1a, which encodes the MAP1A protein, significantly delays photoreceptor degeneration in Tulp1 mutant mice. MAP1 proteins are important in stabilizing microtubules in neuronal cells, but their role in photoreceptors remains obscure. To investigate the relationship between Tulp1 and MAP1 proteins, we performed western blots, immunoprecipitations (IP), immunohistochemistry and proximity ligand assays (PLA) in wild-type and tulp1-/- mouse retinas. Our IP experiments provide evidence that Tulp1 and MAP1B interact while PLA experiments localize their interaction to the outer nuclear layer and IS of photoreceptors. Although MAP1A and MAP1B protein levels are not affected in the tulp1-/- retina, they are no longer localized to the OS of photoreceptors. This may be the cause for disorganized OSs in tulp1-/- mice, and indicate that their transport to the OS is Tulp1-dependent.
    MeSH term(s) Animals ; Biological Transport/physiology ; Eye Proteins/genetics ; Eye Proteins/metabolism ; Humans ; Mice ; Mice, Knockout ; Microtubule-Associated Proteins/metabolism ; Photoreceptor Cells, Vertebrate/metabolism ; Retina/metabolism ; Retinal Degeneration/genetics ; Retinal Degeneration/metabolism ; Retinal Photoreceptor Cell Outer Segment/metabolism
    Chemical Substances Eye Proteins ; Microtubule-Associated Proteins ; Mtap1a protein, mouse ; Tulp1 protein, mouse ; microtubule-associated protein 1B
    Language English
    Publishing date 2014
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ISSN 2214-8019 ; 0065-2598
    ISSN (online) 2214-8019
    ISSN 0065-2598
    DOI 10.1007/978-1-4614-3209-8_65
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Tubby-like protein 1 (Tulp1) is required for normal photoreceptor synaptic development.

    Grossman, Gregory H / Pauer, Gayle J T / Narendra, Umadevi / Hagstrom, Stephanie A

    Advances in experimental medicine and biology

    2010  Volume 664, Page(s) 89–96

    Abstract: Mutations in the photoreceptor-specific tubby-like protein 1 (TULP1) underlie a form of autosomal recessive retinitis pigmentosa in humans and photoreceptor degeneration in mice. In wild type (wt) mice, Tulp1 is localized to the photoreceptor inner ... ...

    Abstract Mutations in the photoreceptor-specific tubby-like protein 1 (TULP1) underlie a form of autosomal recessive retinitis pigmentosa in humans and photoreceptor degeneration in mice. In wild type (wt) mice, Tulp1 is localized to the photoreceptor inner segment, connecting cilium and synapse. To investigate the role of Tulp1 in the synapse, we examined the pre- and postsynaptic architecture in tulp1-/- mice. We used immunohistochemistry to examine tulp1-/- mice prior to retinal degeneration and made comparisons to wt littermates and rd10 mice. In the tulp1-/- synapse, the spatial relationship between the ribbon-associated proteins, Bassoon and Piccolo, are disrupted, and few intact ribbons are present. Furthermore, bipolar cell dendrites are stunted, most likely a direct consequence of the malformed photoreceptor synapses. Comparable abnormalities are not seen in rd10 mice. The association of early onset and severe photoreceptor degeneration, which is preceded by synaptic abnormalities, appears to represent a phenotype not previously described. Our new evidence indicates that Tulp1 is not only critical for photoreceptor function and survival, but is essential for the proper development of the photoreceptor synapse.
    MeSH term(s) Animals ; DNA-Binding Proteins/metabolism ; Eye Proteins/metabolism ; Fluorescent Antibody Technique ; Mice ; Phosphoproteins/metabolism ; Photoreceptor Cells, Vertebrate/cytology ; Photoreceptor Cells, Vertebrate/metabolism ; Retinal Bipolar Cells/cytology ; Retinal Bipolar Cells/metabolism ; Synapses/metabolism
    Chemical Substances DNA-Binding Proteins ; Eye Proteins ; Phosphoproteins ; Tulp1 protein, mouse ; Ctbp2 protein, mouse (EC 1.1.-)
    Language English
    Publishing date 2010-03-17
    Publishing country United States
    Document type Journal Article
    ISSN 2214-8019 ; 0065-2598
    ISSN (online) 2214-8019
    ISSN 0065-2598
    DOI 10.1007/978-1-4419-1399-9_11
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Tulp1 is involved in specific photoreceptor protein transport pathways.

    Hagstrom, Stephanie A / Watson, Rao F / Pauer, Gayle J T / Grossman, Gregory H

    Advances in experimental medicine and biology

    2012  Volume 723, Page(s) 783–789

    MeSH term(s) Animals ; Chaperonins/metabolism ; Eye Proteins/genetics ; Eye Proteins/metabolism ; Intermediate Filament Proteins/metabolism ; Membrane Glycoproteins/metabolism ; Membrane Proteins/metabolism ; Mice ; Mice, Mutant Strains ; Nerve Tissue Proteins/metabolism ; Peripherins ; Photoreceptor Cells, Vertebrate/metabolism ; Protein Transport/physiology ; Retinal Degeneration/genetics ; Retinal Degeneration/metabolism ; Retinal Photoreceptor Cell Outer Segment/metabolism ; Rhodopsin/metabolism
    Chemical Substances Eye Proteins ; Intermediate Filament Proteins ; Membrane Glycoproteins ; Membrane Proteins ; Nerve Tissue Proteins ; Peripherins ; Tulp1 protein, mouse ; Rhodopsin (9009-81-8) ; Chaperonins (EC 3.6.1.-)
    Language English
    Publishing date 2012
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ISSN 2214-8019 ; 0065-2598
    ISSN (online) 2214-8019
    ISSN 0065-2598
    DOI 10.1007/978-1-4614-0631-0_100
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Immunocytochemical evidence of Tulp1-dependent outer segment protein transport pathways in photoreceptor cells.

    Grossman, Gregory H / Watson, Rao F / Pauer, Gayle J T / Bollinger, Kathryn / Hagstrom, Stephanie A

    Experimental eye research

    2011  Volume 93, Issue 5, Page(s) 658–668

    Abstract: Tulp1 is a protein of unknown function exclusive to rod and cone photoreceptor cells. Mutations in the gene cause autosomal recessive retinitis pigmentosa in humans and photoreceptor degeneration in mice. In tulp1-/- mice, rod and cone opsins are ... ...

    Abstract Tulp1 is a protein of unknown function exclusive to rod and cone photoreceptor cells. Mutations in the gene cause autosomal recessive retinitis pigmentosa in humans and photoreceptor degeneration in mice. In tulp1-/- mice, rod and cone opsins are mislocalized, and rhodopsin-bearing extracellular vesicles accumulate around the inner segment, indicating that Tulp1 is involved in protein transport from the inner segment to the outer segment. To investigate this further, we sought to define which outer segment transport pathways are Tulp1-dependent. We used immunohistochemistry to examine the localization of outer segment proteins in tulp1-/- photoreceptors, prior to retinal degeneration. We also surveyed the condition of inner segment organelles and rhodopsin transport machinery proteins. Herein, we show that guanylate cyclase 1 and guanylate cyclase activating proteins 1 and 2 are mislocalized in the absence of Tulp1. Furthermore, arrestin does not translocate to the outer segment in response to light stimulation. Additionally, data from the tulp1-/- retina adds to the understanding of peripheral membrane protein transport, indicating that rhodopsin kinase and transducin do not co-transport in rhodopsin carrier vesicles and phosphodiesterase does not co-transport in guanylate cyclase carrier vesicles. These data implicate Tulp1 in the transport of selective integral membrane outer segment proteins and their associated proteins, specifically, the opsin and guanylate cyclase carrier pathways. The exact role of Tulp1 in outer segment protein transport remains elusive. However, without Tulp1, two rhodopsin transport machinery proteins exhibit abnormal distribution, Rab8 and Rab11, suggesting a role for Tulp1 in vesicular docking and fusion at the plasma membrane near the connecting cilium.
    MeSH term(s) Adaptation, Ocular ; Animals ; Arrestin/metabolism ; Eye Proteins/metabolism ; Eye Proteins/physiology ; Fluorescent Antibody Technique, Indirect ; G-Protein-Coupled Receptor Kinase 1/metabolism ; Guanylate Cyclase/metabolism ; Guanylate Cyclase-Activating Proteins/metabolism ; Mice ; Mice, Inbred C57BL ; Mice, Knockout ; Protein Transport ; Receptors, Cell Surface/metabolism ; Retinal Photoreceptor Cell Outer Segment/metabolism ; Transducin/metabolism
    Chemical Substances Arrestin ; Eye Proteins ; Guanylate Cyclase-Activating Proteins ; Receptors, Cell Surface ; Tulp1 protein, mouse ; guanylate cyclase 1 ; G-Protein-Coupled Receptor Kinase 1 (EC 2.7.11.14) ; Transducin (EC 3.6.5.1) ; Guanylate Cyclase (EC 4.6.1.2)
    Language English
    Publishing date 2011-08-16
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 80122-7
    ISSN 1096-0007 ; 0014-4835
    ISSN (online) 1096-0007
    ISSN 0014-4835
    DOI 10.1016/j.exer.2011.08.005
    Database MEDical Literature Analysis and Retrieval System OnLINE

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