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  1. Article ; Online: Fire intensity regulates the short-term postfire response of the microbiome in Arctic tundra soil

    Ramm, Elisabeth / Ambus, Per Lennart / Gschwendtner, Silvia / Liu, Chunyan / Schloter, Michael / Dannenmann, Michael

    Geoderma. 2023 Oct., v. 438 p.116627-

    2023  

    Abstract: Arctic tundra fires have been increasing in extent, frequency and intensity and are likely impacting both soil nitrogen (N) and phosphorus (P) cycling and, thus, permafrost ecosystem functioning. However, little is known on the underlying microbial ... ...

    Abstract Arctic tundra fires have been increasing in extent, frequency and intensity and are likely impacting both soil nitrogen (N) and phosphorus (P) cycling and, thus, permafrost ecosystem functioning. However, little is known on the underlying microbial mechanisms, and different fire intensities were neglected so far. To better understand immediate influences of different fire intensities on the soil microbiome involved in nutrient cycling in permafrost-affected soil, we deployed experimental fires with low and high intensity on an Arctic tundra soil on Disko Island, Greenland. Soil sampling took place three days postfire and included an unburned control. Using quantitative real-time PCR, copy numbers of 16S and ITS as well as of 17 genes coding for functional microbial groups catalyzing major steps of N and P turnover were assessed. We show that fires change the abundance of microbial groups already after three days with fire intensity as key mediating factor. Specifically, low-intensity fire significantly enhanced the abundance of chiA mineralizers and ammonia-oxidizing archaea, while other groups were not affected. On the contrary, high-intensity fire decreased the abundance of chiA mineralizers and of microbes that fix dinitrogen, indicating a dampening effect on N cycling. Only high-intensity fires enhanced ammonium concentrations (by an order of magnitude). This can be explained by burned plant material and the absence of plant uptake, together with impaired further N processing. Fire with high intensity also decreased nirK-type denitrifiers. In contrast, after fire with low intensity there was a trend for a decreased nosZ : (nirK+nirS) ratio, indicating – together with increased nitrate concentrations – an enhanced potential for nitric oxide and nitrous oxide emissions. Concerning P transformation, only gcd was affected in the short term which is important for P solubilization. Changes in gene numbers consistently showed the same contrasting pattern of elevated abundance with low fire intensity and decreased abundance with high fire intensity. Differentiating fire intensities is therefore crucial for further, longer-term studies of fire-induced changes in N and P transformations and potential nutrient-climate feedbacks of permafrost-affected soils.
    Keywords Archaea ; Salvia hispanica ; ammonium ; denitrifying microorganisms ; ecosystems ; fire intensity ; genes ; microbiome ; nitrates ; nitric oxide ; nitrogen ; permafrost ; phosphorus ; quantitative polymerase chain reaction ; soil microorganisms ; solubilization ; tundra ; tundra soils ; Greenland ; Arctic ; Soil microbiome ; qPCR
    Language English
    Dates of publication 2023-10
    Publishing place Elsevier B.V.
    Document type Article ; Online
    ZDB-ID 281080-3
    ISSN 1872-6259 ; 0016-7061
    ISSN (online) 1872-6259
    ISSN 0016-7061
    DOI 10.1016/j.geoderma.2023.116627
    Database NAL-Catalogue (AGRICOLA)

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  2. Article: Dynamics of Bacterial Root Endophytes of

    Mahnkopp-Dirks, Felix / Radl, Viviane / Kublik, Susanne / Gschwendtner, Silvia / Schloter, Michael / Winkelmann, Traud

    Frontiers in microbiology

    2022  Volume 13, Page(s) 841558

    Abstract: Apple replant disease (ARD) is a worldwide problem for tree nurseries and orchards leading to reduced plant growth and fruit quality. The etiology of this complex phenomenon is poorly understood, but shifts of the bulk soil and rhizosphere microbiome ... ...

    Abstract Apple replant disease (ARD) is a worldwide problem for tree nurseries and orchards leading to reduced plant growth and fruit quality. The etiology of this complex phenomenon is poorly understood, but shifts of the bulk soil and rhizosphere microbiome seem to play an important role. Since roots are colonized by microbes from the rhizosphere, studies of the endophytic microbiome in relation to ARD are meaningful. In this study, culture-independent and culture-dependent approaches were used in order to unravel the endophytic root microbiome of apple plants 3, 7, and 12 months after planting in ARD-affected soil and ARD-unaffected control soil at two different field sites. Next to a high diversity of
    Language English
    Publishing date 2022-03-25
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2587354-4
    ISSN 1664-302X
    ISSN 1664-302X
    DOI 10.3389/fmicb.2022.841558
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Microbial signatures in amniotic fluid at preterm birth and association with bronchopulmonary dysplasia.

    Staude, Birte / Gschwendtner, Silvia / Frodermann, Tina / Oehmke, Frank / Kohl, Thomas / Kublik, Susanne / Schloter, Michael / Ehrhardt, Harald

    Respiratory research

    2023  Volume 24, Issue 1, Page(s) 248

    Abstract: Background: Microbiome dysbiosis can have long-lasting effects on our health and induce the development of various diseases. Bronchopulmonary dysplasia (BPD) is a multifactorial disease with pre- and postnatal origins including intra-amniotic infection ... ...

    Abstract Background: Microbiome dysbiosis can have long-lasting effects on our health and induce the development of various diseases. Bronchopulmonary dysplasia (BPD) is a multifactorial disease with pre- and postnatal origins including intra-amniotic infection as main risk factor. Recently, postnatal pathologic lung microbiota colonization was associated with BPD. The objectives of this prospective observational cohort study were to describe differences in bacterial signatures in the amniotic fluid (AF) of intact pregnancies without clinical signs or risk of preterm delivery and AF samples obtained during preterm deliveries and their variations between different BPD disease severity stages.
    Methods: AF samples were collected under sterile conditions during fetal intervention from intact pregnancies (n = 17) or immediately before preterm delivery < 32 weeks (n = 126). Metabarcoding based approaches were used for the molecular assessment of bacterial 16S rRNA genes to describe bacterial community structure.
    Results: The absolute amount of 16S rRNA genes was significantly increased in AF of preterm deliveries and detailed profiling revealed a reduced alpha diversity and a significant change in beta diversity with a reduced relative abundance of 16S rRNA genes indicative for Lactobacillus and Acetobacter while Fusobacterium, Pseudomonas, Ureaplasma and Staphylococcus 16S rRNA gene prevailed. Although classification of BPD by disease severity revealed equivalent absolute 16S rRNA gene abundance and alpha and beta diversity in no, mild and moderate/severe BPD groups, for some 16S rRNA genes differences were observed in AF samples. Bacterial signatures of infants with moderate/severe BPD showed predominance of 16S rRNA genes belonging to the Escherichia-Shigella cluster while Ureaplasma and Enterococcus species were enriched in AF samples of infants with mild BPD.
    Conclusions: Our study identified distinct and diverse intrauterine 16S rRNA gene patterns in preterm infants immediately before birth, differing from the 16S rRNA gene signature of intact pregnancies. The distinct 16S rRNA gene signatures at birth derive from bacteria with varying pathogenicity to the immature lung and are suited to identify preterm infants at risk. Our results emphasize the prenatal impact to the origins of BPD.
    MeSH term(s) Infant ; Pregnancy ; Female ; Infant, Newborn ; Humans ; Premature Birth/diagnosis ; Infant, Premature ; Bronchopulmonary Dysplasia/diagnosis ; Bronchopulmonary Dysplasia/epidemiology ; Bronchopulmonary Dysplasia/genetics ; Amniotic Fluid ; RNA, Ribosomal, 16S/genetics ; Prospective Studies ; Bacteria/genetics
    Chemical Substances RNA, Ribosomal, 16S
    Language English
    Publishing date 2023-10-16
    Publishing country England
    Document type Observational Study ; Journal Article
    ZDB-ID 2041675-1
    ISSN 1465-993X ; 1465-993X
    ISSN (online) 1465-993X
    ISSN 1465-993X
    DOI 10.1186/s12931-023-02560-w
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Molecular Barcoding Reveals the Genus Streptomyces as Associated Root Endophytes of Apple (Malus domestica) Plants Grown in Soils Affected by Apple Replant Disease

    Mahnkopp-Dirks, Felix / Radl, Viviane / Kublik, Susanne / Gschwendtner, Silvia / Schloter, Michael / Winkelmann, Traud

    Phytobiomes journal. 2021 June, v. 5, no. 2

    2021  

    Abstract: Apple replant disease (ARD) occurs when apple is repeatedly planted at the same site, leading to growth reductions and losses in fruit yield and quality. Up to now, the etiology has been poorly understood; however, soil (micro)biota are known to be ... ...

    Abstract Apple replant disease (ARD) occurs when apple is repeatedly planted at the same site, leading to growth reductions and losses in fruit yield and quality. Up to now, the etiology has been poorly understood; however, soil (micro)biota are known to be involved. Because endophytes often colonize plants via the rhizosphere, this study aimed at comparing the bacterial endophytic root microbiome in plants growing in ARD-affected and unaffected soils from three different sites based on greenhouse biotests using a molecular barcoding approach. The initial endophytic microbiome of the starting material (in vitro propagated plants of the apple rootstock M26) did not significantly affect the overall richness and diversity of the endophytic community in plants after 8 weeks of growth in the respective soils but some genera of the initial microbiome managed to establish in apple roots. Proteobacteria was the dominant phylum in all samples. No differences in diversity or number of amplicon sequence variants (ASVs) between plants grown in ARD soil and unaffected soil was observed. However, several ASVs of high abundance uniquely found in plants grown in ARD-affected soils were Streptomyces spp. In soil from all three sites, these Streptomyces spp. were negatively correlated with plant growth parameters. Future inoculation experiments using selected Streptomyces isolates have to prove whether bacteria from this genus are opportunists or part of the ARD complex. For the first time, the bacterial endophytic community of apple roots grown in ARD-affected soils was characterized, which will help us to understand the etiology of ARD and develop countermeasures. Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY 4.0 International license.
    Keywords Malus domestica ; Proteobacteria ; Streptomyces ; apples ; bioassays ; endophytes ; etiology ; fruit yield ; genetic barcoding ; greenhouses ; microbiome ; phytobiome ; plant growth ; replant disease ; rhizosphere ; rootstocks ; soil
    Language English
    Dates of publication 2021-06
    Size p. 177-189.
    Publishing place The American Phytopathological Society
    Document type Article
    ISSN 2471-2906
    DOI 10.1094/PBIOMES-07-20-0053-R
    Database NAL-Catalogue (AGRICOLA)

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  5. Article ; Online: European oak metabolites shape digestion and fitness of the herbivore Tortrix viridana

    Bertić, Marko / Orgel, Franziska / Gschwendtner, Silvia / Schloter, Michael / Moritz, Franco / Schmitt‐Kopplin, Philippe / Zimmer, Ina / Fladung, Matthias / Schnitzler, Jörg‐Peter / Schroeder, Hilke / Ghirardo, Andrea

    Functional Ecology. 2023 May, v. 37, no. 5 p.1476-1491

    2023  

    Abstract: Plants harbour a wide range of leaf‐feeding insects whose survival and fitness are influenced by both energy‐rich molecules and phytochemicals in the host foliage. Yet, how leaf host chemical diversity and insect microbiota—key factors in ecological and ... ...

    Abstract Plants harbour a wide range of leaf‐feeding insects whose survival and fitness are influenced by both energy‐rich molecules and phytochemicals in the host foliage. Yet, how leaf host chemical diversity and insect microbiota—key factors in ecological and physiological processes—impact insect nutrition and fitness are still poorly understood. To study the effects of leaf metabolic composition on insect herbivory resistance and performance, we fed the larvae of the specialist herbivory Tortrix viridana with leaves of susceptible and resistant Quercus robur trees that are characterized by contrasting metabolomes. We analysed the larval performance and mortality, the metabolomes in plant leaves, and in the insects' saliva and faeces by non‐targeted metabolomics. Using chemometrics, mass difference network analysis and metabarcoding, we show the metabolome changes and chemical reactions associated with the different diets as well as their impact on insect fitness and gut microbiota. In the saliva and faeces of larvae, plant secondary metabolites (e.g. flavonoids) persisted more the insect digestion while compounds from primary metabolism were more depleted. In addition, metabolic reactions within the larvae indicated different degradation pathways used on the two plant metabolic types (syn. metabotypes), including sulfation and sulfonation. We show that feeding insects with resistant oak leaves, enriched in secondary metabolites and depleted in primary metabolites, impaired insect performance and mortality. Although the insects' gut microbiota was slightly different upon the contrasting diets, overall, it was fairly stable. Despite the impact of host chemicals on herbivores, larvae were generally highly efficient in nutrient assimilation (feed conversion ratios of 3.3–3.6) and able to minimize plant defences (78% of secondary metabolites were converted, broken down or sequestrated). The comparison of the oak metabotypes showed how the foliar composition of resistant oaks affected insect fitness by influencing their digestion. Herbivores feeding on resistant oaks were less efficient due to their lower ability to metabolize and detoxify higher levels of host phytochemicals, whereas those on susceptible oaks were more efficient as they could degrade the host metabolome. This study highlights the importance of the oak leaf chemical composition to insect digestion and fitness of a specialized herbivore. Read the free Plain Language Summary for this article on the Journal blog.
    Keywords DNA barcoding ; Quercus robur ; Tortrix viridana ; chemical composition ; chemometrics ; digestion ; feces ; feed conversion ; flavonoids ; herbivores ; insect nutrition ; insects ; intestinal microorganisms ; larvae ; leaves ; metabolism ; metabolome ; metabolomics ; mortality ; saliva ; secondary metabolites
    Language English
    Dates of publication 2023-05
    Size p. 1476-1491.
    Publishing place John Wiley & Sons, Ltd
    Document type Article ; Online
    Note JOURNAL ARTICLE
    ZDB-ID 2020307-X
    ISSN 1365-2435 ; 0269-8463
    ISSN (online) 1365-2435
    ISSN 0269-8463
    DOI 10.1111/1365-2435.14299
    Database NAL-Catalogue (AGRICOLA)

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  6. Article: Alder-induced stimulation of soil gross nitrogen turnover in a permafrost-affected peatland of Northeast China

    Ramm, Elisabeth / Liu, Chunyan / Mueller, Carsten W. / Gschwendtner, Silvia / Yue, Hongyu / Wang, Xianwei / Bachmann, Juliane / Bohnhoff, Joost A. / Ostler, Ulrike / Schloter, Michael / Rennenberg, Heinz / Dannenmann, Michael

    Soil biology & biochemistry. 2022 Sept., v. 172

    2022  

    Abstract: For the prediction of permafrost nitrogen (N) climate feedbacks, a better process-based understanding of the N cycle in permafrost ecosystems is urgently needed. Therefore, we characterized and quantified soil organic matter, gross soil microbial ... ...

    Abstract For the prediction of permafrost nitrogen (N) climate feedbacks, a better process-based understanding of the N cycle in permafrost ecosystems is urgently needed. Therefore, we characterized and quantified soil organic matter, gross soil microbial ammonification and nitrification and soil-atmosphere exchange of nitrous oxide (N₂O) of boreal permafrost ecosystems on the southern edge of the Eurasian permafrost area in situ. Soil organic carbon (SOC) and total nitrogen (TN) stocks (top 0.5 m) of tree-free lowland peatland (LP) soils exceeded those of gravel-rich upland forest (UF) soils by an order of magnitude. Nuclear magnetic resonance spectroscopy revealed more recalcitrant organic matter at greater depth and more bioavailable organic matter substrates in upper peat horizons. In line with this result, gross ammonification and nitrification generally decreased with increasing sampling depth. Gross rates of mineral N turnover in active layers were comparable to those of temperate ecosystems. Despite substantial gross ammonification, the low nitrification:ammonification ratios and negligible soil N₂O emissions depicted however a closed N cycle at UF and LP characterized by N limitation. In strong contrast, the lowland peat soils underneath alder trees (LA), being associated with diazotrophic bacteria in root nodules, showed an accelerated N turnover with very high gross rates of ammonification (3.1 g N m⁻² d⁻¹) and nitrification (0.5 g N m⁻² d⁻¹), exceeding those of UF and LP soils by an order of magnitude. This was accompanied by substantial N₂O emissions comparable to temperate agricultural systems or tropical forests. The increase in gross soil microbial ammonification and nitrification was most pronounced in the rooted soil layer, where N inputs from biological N fixation almost doubled TN concentrations and halved SOC:TN ratios. The frozen ground of LA contained strongly increased ammonium concentrations that might be prone to release upon thaw via subsequent nitrification. This study shows that alder forests that further expand on permafrost-affected peatlands with global change create hot spots of soil mineral N turnover, thereby potentially enhancing permafrost N climate feedbacks via N₂O emissions.
    Keywords ammonification ; ammonium ; bioavailability ; climate ; global change ; nitrification ; nitrogen ; nitrogen cycle ; nitrogen fixation ; nitrous oxide ; nuclear magnetic resonance spectroscopy ; peat ; peatlands ; permafrost ; prediction ; soil minerals ; soil organic carbon ; soil-atmosphere interactions ; total nitrogen ; upland forests ; China
    Language English
    Dates of publication 2022-09
    Publishing place Elsevier Ltd
    Document type Article
    ZDB-ID 280810-9
    ISSN 0038-0717
    ISSN 0038-0717
    DOI 10.1016/j.soilbio.2022.108757
    Database NAL-Catalogue (AGRICOLA)

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  7. Book ; Online ; Thesis: Effects of a genetically modified potato line with altered starch metabolism on carbon fluxes within the plant-soil system and on microbial community structure and function in the rhizosphere

    Gschwendtner, Silvia

    2010  

    Author's details Silvia Gschwendtner
    Language English
    Size Online-Ressource
    Document type Book ; Online ; Thesis
    Thesis / German Habilitation thesis Techn. Univ., Diss.--München, 2010
    Database Library catalogue of the German National Library of Science and Technology (TIB), Hannover

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  8. Book ; Online ; Thesis: Effects of a genetically modified potato line with altered starch metabolism on carbon fluxes within the plant-soil system and on microbial community structure and function in the rhizosphere

    Gschwendtner, Silvia

    2010  

    Author's details Silvia Gschwendtner
    Language English
    Size Online-Ressource
    Document type Book ; Online ; Thesis
    Thesis / German Habilitation thesis Techn. Univ., Diss.--München, 2010
    Database Former special subject collection: coastal and deep sea fishing

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  9. Article: Nitrogen fertilization affects bacteria utilizing plant-derived carbon in the rhizosphere of beech seedlings

    Gschwendtner, Silvia / Franz Buegger / Marion Engel / Michael Schloter / Tillmann Lueders

    Plant and soil. 2016 Oct., v. 407, no. 1-2

    2016  

    Abstract: BACKGROUND AND AIMS: Forest ecosystems may act as sinks for or source of atmospheric CO₂. While inorganic nitrogen (N) fertilization increases aboveground tree biomass, the effects on soil and rhizosphere microorganisms are less clear, indicating ... ...

    Abstract BACKGROUND AND AIMS: Forest ecosystems may act as sinks for or source of atmospheric CO₂. While inorganic nitrogen (N) fertilization increases aboveground tree biomass, the effects on soil and rhizosphere microorganisms are less clear, indicating potentially unpredictable changes in nutrient cycling processes maintaining ecosystem functioning. Although plant-derived carbon (C) is the main C source in soils during the vegetation period, information on the response of rhizosphere bacteria assimilating rhizodeposits to increased soil N availability mainly for trees is missing. METHODS: We performed a greenhouse experiment with ¹³C-CO₂ labelled young beech seedlings grown under different N fertilization levels. DNA Stable Isotope Probing (DNA-SIP) in combination with TRFLP and pyrosequencing enabled us to identify bacteria assimilating plant-derived C and to assess the main responders phylogenetically. RESULTS: Although above- and belowground allocation of recently fixed photosynthates remained unchanged, microbial rhizosphere community composition was clearly affected by fertilization. Besides, we found lower ¹³C incorporation into microbial biomass in fertilized soil. Moreover, it could be shown that only a small subset of the rhizosphere microbiome incorporated recently fixed C into its DNA, dominated by Proteobacteria (Alpha- and Betaproteobacteria) and Actinobacteria (Actinomycetales). CONCLUSIONS: Our results suggest that N fertilization may change both the diversity of bacterial communities using rhizodeposits and assimilation rates of recently fixed photosynthates. Given the close interaction of beneficial and/or deleterious microbes and plants in the rhizosphere, this could potentially have positive or negative implications for plant performance on long-term.
    Keywords aboveground biomass ; Actinomycetales ; bacterial communities ; beta-Proteobacteria ; biogeochemical cycles ; carbon ; carbon dioxide ; community structure ; DNA ; Fagus ; fertilizer analysis ; fertilizer rates ; forest ecosystems ; greenhouse experimentation ; isotope labeling ; microbial biomass ; microbiome ; nitrogen ; nitrogen fertilizers ; photosynthates ; phylogeny ; rhizosphere ; rhizosphere bacteria ; seedlings ; sequence analysis ; soil ; stable isotopes ; trees ; vegetation
    Language English
    Dates of publication 2016-10
    Size p. 203-215.
    Publishing place Springer International Publishing
    Document type Article
    ZDB-ID 208908-7
    ISSN 1573-5036 ; 0032-079X
    ISSN (online) 1573-5036
    ISSN 0032-079X
    DOI 10.1007/s11104-016-2888-z
    Database NAL-Catalogue (AGRICOLA)

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  10. Article ; Online: Differential effects of lung inflammation on insulin resistance in humans and mice.

    Karlina, Ruth / Flexeder, Claudia / Musiol, Stephanie / Bhattacharyya, Madhumita / Schneider, Evelyn / Altun, Irem / Gschwendtner, Silvia / Neumann, Avidan U / Nano, Jana / Schloter, Michael / Peters, Annette / Schulz, Holger / Schmidt-Weber, Carsten B / Standl, Marie / Traidl-Hoffmann, Claudia / Alessandrini, Francesca / Ussar, Siegfried

    Allergy

    2022  Volume 77, Issue 8, Page(s) 2482–2497

    Abstract: Background: The rates of obesity, its associated diseases, and allergies are raising at alarming rates in most countries. House dust mites (HDM) are highly allergenic and exposure often associates with an urban sedentary indoor lifestyle, also resulting ...

    Abstract Background: The rates of obesity, its associated diseases, and allergies are raising at alarming rates in most countries. House dust mites (HDM) are highly allergenic and exposure often associates with an urban sedentary indoor lifestyle, also resulting in obesity. The aim of this study was to investigate the epidemiological association and physiological impact of lung inflammation on obesity and glucose homeostasis.
    Methods: Epidemiological data from 2207 adults of the population-based KORA FF4 cohort were used to test associations between asthma and rhinitis with metrics of body weight and insulin sensitivity. To obtain functional insights, C57BL/6J mice were intranasally sensitized and challenged with HDM and simultaneously fed with either low-fat or high-fat diet for 12 weeks followed by a detailed metabolic and biochemical phenotyping of the lung, liver, and adipose tissues.
    Results: We found a direct association of asthma with insulin resistance but not body weight in humans. In mice, co-development of obesity and HDM-induced lung inflammation attenuated inflammation in lung and perigonadal fat, with little impact on body weight, but small shifts in the composition of gut microbiota. Exposure to HDM improved glucose tolerance, reduced hepatosteatosis, and increased energy expenditure and basal metabolic rate. These effects associate with increased activity of thermogenic adipose tissues independent of uncoupling protein 1.
    Conclusions: Asthma associates with insulin resistance in humans, but HDM challenge results in opposing effects on glucose homeostasis in mice due to increased energy expenditure, reduced adipose inflammation, and hepatosteatosis.
    MeSH term(s) Adult ; Animals ; Asthma/epidemiology ; Asthma/etiology ; Body Weight ; Diet, High-Fat/adverse effects ; Glucose/metabolism ; Humans ; Inflammation/metabolism ; Insulin Resistance ; Mice ; Mice, Inbred C57BL ; Obesity/metabolism ; Pneumonia ; Pyroglyphidae
    Chemical Substances Glucose (IY9XDZ35W2)
    Language English
    Publishing date 2022-02-04
    Publishing country Denmark
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 391933-x
    ISSN 1398-9995 ; 0105-4538
    ISSN (online) 1398-9995
    ISSN 0105-4538
    DOI 10.1111/all.15226
    Database MEDical Literature Analysis and Retrieval System OnLINE

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