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  1. Article: Modeling the gene delivery process of the needle array-based tissue nanotransfection.

    Li, Zhigang / Xuan, Yi / Ghatak, Subhadip / Guda, Poornachander R / Roy, Sashwati / Sen, Chandan K

    Nano research

    2021  Volume 15, Issue 4, Page(s) 3409–3421

    Abstract: Hollow needle array-based tissue nanotransfection (TNT) presents ... ...

    Abstract Hollow needle array-based tissue nanotransfection (TNT) presents an
    Language English
    Publishing date 2021-12-18
    Publishing country China
    Document type Journal Article
    ZDB-ID 2442216-2
    ISSN 1998-0000 ; 1998-0124
    ISSN (online) 1998-0000
    ISSN 1998-0124
    DOI 10.1007/s12274-021-3947-1
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Nanoscopic and Functional Characterization of Keratinocyte-Originating Exosomes in the Wound Fluid of Non-Diabetic and Diabetic Chronic Wound Patients.

    Guda, Poornachander R / Sharma, Anu / Anthony, Adam J / ElMasry, Mohamed S / Couse, Andrew D / Ghatak, Piya Das / Das, Amitava / Timsina, Lava / Trinidad, Jonathan C / Roy, Sashwati / Clemmer, David E / Sen, Chandan K / Ghatak, Subhadip

    Nano today

    2023  Volume 52

    Abstract: Exosomes, a class of extracellular vesicles of endocytic origin, play a critical role in paracrine signaling for successful cell-cell ... ...

    Abstract Exosomes, a class of extracellular vesicles of endocytic origin, play a critical role in paracrine signaling for successful cell-cell crosstalk
    Language English
    Publishing date 2023-08-16
    Publishing country England
    Document type Journal Article
    ZDB-ID 2224882-1
    ISSN 1878-044X ; 1748-0132
    ISSN (online) 1878-044X
    ISSN 1748-0132
    DOI 10.1016/j.nantod.2023.101954
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Immunomodulatory therapy with glatiramer acetate reduces endoplasmic reticulum stress and mitochondrial dysfunction in experimental autoimmune encephalomyelitis.

    Makar, Tapas K / Guda, Poornachander R / Ray, Sugata / Andhavarapu, Sanketh / Keledjian, Kaspar / Gerzanich, Volodymyr / Simard, J Marc / Nimmagadda, Vamshi K C / Bever, Christopher T

    Scientific reports

    2023  Volume 13, Issue 1, Page(s) 5635

    Abstract: Endoplasmic reticulum (ER) stress and mitochondrial dysfunction are found in lesions of multiple sclerosis (MS) and animal models of MS such as experimental autoimmune encephalomyelitis (EAE), and may contribute to the neuronal loss that underlies ... ...

    Abstract Endoplasmic reticulum (ER) stress and mitochondrial dysfunction are found in lesions of multiple sclerosis (MS) and animal models of MS such as experimental autoimmune encephalomyelitis (EAE), and may contribute to the neuronal loss that underlies permanent impairment. We investigated whether glatiramer acetate (GA) can reduce these changes in the spinal cords of chronic EAE mice by using routine histology, immunostaining, and electron microscopy. EAE spinal cord tissue exhibited increased inflammation, demyelination, mitochondrial dysfunction, ER stress, downregulation of NAD+ dependent pathways, and increased neuronal death. GA reversed these pathological changes, suggesting that immunomodulating therapy can indirectly induce neuroprotective effects in the CNS by mediating ER stress.
    MeSH term(s) Mice ; Animals ; Glatiramer Acetate/pharmacology ; Glatiramer Acetate/therapeutic use ; Encephalomyelitis, Autoimmune, Experimental ; Peptides/pharmacology ; Multiple Sclerosis ; Immunomodulation ; Endoplasmic Reticulum Stress ; Mitochondria/metabolism ; Mice, Inbred C57BL ; Disease Models, Animal
    Chemical Substances Glatiramer Acetate (5M691HL4BO) ; Peptides
    Language English
    Publishing date 2023-04-06
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-023-29852-x
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Analysis of Keratinocytic Exosomes from Diabetic and Nondiabetic Mice by Charge Detection Mass Spectrometry.

    Brown, Brooke A / Guda, Poornachander R / Zeng, Xuyao / Anthony, Adam / Couse, Andrew / Barnes, Lauren F / Sharon, Edie M / Trinidad, Jonathan C / Sen, Chandan K / Jarrold, Martin F / Ghatak, Subhadip / Clemmer, David E

    Analytical chemistry

    2022  Volume 94, Issue 25, Page(s) 8909–8918

    Abstract: Unresolved inflammation compromises diabetic wound healing. Recently, we reported that inadequate RNA packaging in murine wound-edge keratinocyte-originated exosomes ( ...

    Abstract Unresolved inflammation compromises diabetic wound healing. Recently, we reported that inadequate RNA packaging in murine wound-edge keratinocyte-originated exosomes (
    MeSH term(s) Animals ; Diabetes Mellitus, Experimental/pathology ; Exosomes/pathology ; Inflammation ; Keratinocytes ; Mass Spectrometry ; Mice
    Language English
    Publishing date 2022-06-14
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 1508-8
    ISSN 1520-6882 ; 0003-2700
    ISSN (online) 1520-6882
    ISSN 0003-2700
    DOI 10.1021/acs.analchem.2c00453
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Analysis of Keratinocytic Exosomes from Diabetic and Nondiabetic Mice by Charge Detection Mass Spectrometry

    Brown, Brooke A. / Guda, Poornachander R. / Zeng, Xuyao / Anthony, Adam / Couse, Andrew / Barnes, Lauren F. / Sharon, Edie M. / Trinidad, Jonathan C. / Sen, Chandan K. / Jarrold, Martin F. / Ghatak, Subhadip / Clemmer, David E.

    Analytical chemistry. 2022 June 14, v. 94, no. 25

    2022  

    Abstract: Unresolved inflammation compromises diabetic wound healing. Recently, we reported that inadequate RNA packaging in murine wound-edge keratinocyte-originated exosomes (Exoκ) leads to persistent inflammation [Zhou, X.ACS Nano2020, 14(10), 12732−12748]. ... ...

    Abstract Unresolved inflammation compromises diabetic wound healing. Recently, we reported that inadequate RNA packaging in murine wound-edge keratinocyte-originated exosomes (Exoκ) leads to persistent inflammation [Zhou, X.ACS Nano2020, 14(10), 12732−12748]. Herein, we use charge detection mass spectrometry (CDMS) to analyze intact Exoκ isolated from a 5 day old wound-edge tissue of diabetic mice and a heterozygous nondiabetic littermate control group. In CDMS, the charge (z) and mass-to-charge ratio (m/z) of individual exosome particles are measured simultaneously, enabling the direct analysis of masses in the 1–200 MDa range anticipated for exosomes. These measurements reveal a broad mass range for Exoκ from ∼10 to >100 MDa. The m and z values for these exosomes appear to fall into families (subpopulations); a statistical modeling analysis partially resolves ∼10–20 Exoκ subpopulations. Complementary proteomics, immunofluorescence, and electron microscopy studies support the CDMS results that Exoκ from diabetic and nondiabetic mice vary substantially. Subpopulations having high z (>650) and high m (>44 MDa) are more abundant in nondiabetic animals. We propose that these high m and z particles may arise from differences in cargo packaging. The veracity of this idea is discussed in light of other recent CDMS results involving genome packaging in vaccines, as well as exosome imaging experiments. Characterization of intact exosome particles based on the physical properties of m and z provides a new means of investigating wound healing and suggests that CDMS may be useful for other pathologies.
    Keywords RNA ; analytical chemistry ; electron microscopy ; exosomes ; fluorescent antibody technique ; genome ; heterozygosity ; inflammation ; mass spectrometry ; mice ; proteomics
    Language English
    Dates of publication 2022-0614
    Size p. 8909-8918.
    Publishing place American Chemical Society
    Document type Article
    ZDB-ID 1508-8
    ISSN 1520-6882 ; 0003-2700
    ISSN (online) 1520-6882
    ISSN 0003-2700
    DOI 10.1021/acs.analchem.2c00453
    Database NAL-Catalogue (AGRICOLA)

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  6. Article ; Online: Mitochondria as Target for Tumor Management of Hemangioendothelioma.

    Gordillo, Gayle M / Biswas, Ayan / Singh, Kanhaiya / Sen, Abhishek / Guda, Poornachander R / Miller, Caroline / Pan, Xueliang / Khanna, Savita / Cadenas, Enrique / Sen, Chandan K

    Antioxidants & redox signaling

    2020  Volume 34, Issue 2, Page(s) 137–153

    Abstract: Aims: ...

    Abstract Aims:
    MeSH term(s) AMP-Activated Protein Kinases/metabolism ; Animals ; Apoptosis/drug effects ; Cell Line, Tumor ; Cell Survival/drug effects ; Endothelial Cells/drug effects ; Endothelial Cells/metabolism ; Female ; Fruit/chemistry ; Hemangioendothelioma/drug therapy ; Hemangioendothelioma/metabolism ; Humans ; Mice ; Mitochondria/drug effects ; Mitochondria/metabolism ; Phosphorylation/drug effects ; Plant Extracts/pharmacology ; Sirtuin 3/metabolism
    Chemical Substances Plant Extracts ; AMP-Activated Protein Kinases (EC 2.7.11.31) ; Sirtuin 3 (EC 3.5.1.-)
    Language English
    Publishing date 2020-07-28
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 1483836-9
    ISSN 1557-7716 ; 1523-0864
    ISSN (online) 1557-7716
    ISSN 1523-0864
    DOI 10.1089/ars.2020.8059
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Endothelial Phospholipase Cγ2 Improves Outcomes of Diabetic Ischemic Limb Rescue Following VEGF Therapy.

    Rustagi, Yashika / Abouhashem, Ahmed S / Verma, Priyanka / Verma, Sumit S / Hernandez, Edward / Liu, Sheng / Kumar, Manishekhar / Guda, Poornachander R / Srivastava, Rajneesh / Mohanty, Sujit K / Kacar, Sedat / Mahajan, Sanskruti / Wanczyk, Kristen E / Khanna, Savita / Murphy, Michael P / Gordillo, Gayle M / Roy, Sashwati / Wan, Jun / Sen, Chandan K /
    Singh, Kanhaiya

    Diabetes

    2022  Volume 71, Issue 5, Page(s) 1149–1165

    Abstract: Therapeutic vascular endothelial growth factor (VEGF) replenishment has met with limited success for the management of critical limb-threatening ischemia. To improve outcomes of VEGF therapy, we applied single-cell RNA sequencing (scRNA-seq) technology ... ...

    Abstract Therapeutic vascular endothelial growth factor (VEGF) replenishment has met with limited success for the management of critical limb-threatening ischemia. To improve outcomes of VEGF therapy, we applied single-cell RNA sequencing (scRNA-seq) technology to study the endothelial cells of the human diabetic skin. Single-cell suspensions were generated from the human skin followed by cDNA preparation using the Chromium Next GEM Single-cell 3' Kit v3.1. Using appropriate quality control measures, 36,487 cells were chosen for downstream analysis. scRNA-seq studies identified that although VEGF signaling was not significantly altered in diabetic versus nondiabetic skin, phospholipase Cγ2 (PLCγ2) was downregulated. The significance of PLCγ2 in VEGF-mediated increase in endothelial cell metabolism and function was assessed in cultured human microvascular endothelial cells. In these cells, VEGF enhanced mitochondrial function, as indicated by elevation in oxygen consumption rate and extracellular acidification rate. The VEGF-dependent increase in cell metabolism was blunted in response to PLCγ2 inhibition. Follow-up rescue studies therefore focused on understanding the significance of VEGF therapy in presence or absence of endothelial PLCγ2 in type 1 (streptozotocin-injected) and type 2 (db/db) diabetic ischemic tissue. Nonviral topical tissue nanotransfection technology (TNT) delivery of CDH5 promoter-driven PLCγ2 open reading frame promoted the rescue of hindlimb ischemia in diabetic mice. Improvement of blood flow was also associated with higher abundance of VWF+/CD31+ and VWF+/SMA+ immunohistochemical staining. TNT-based gene delivery was not associated with tissue edema, a commonly noted complication associated with proangiogenic gene therapies. Taken together, our study demonstrates that TNT-mediated delivery of endothelial PLCγ2, as part of combination gene therapy, is effective in diabetic ischemic limb rescue.
    MeSH term(s) Animals ; Diabetes Mellitus, Experimental/genetics ; Endothelial Cells/metabolism ; Hindlimb/blood supply ; Ischemia/metabolism ; Mice ; Muscle, Skeletal/metabolism ; Neovascularization, Physiologic/genetics ; Phospholipase C gamma/genetics ; Phospholipase C gamma/metabolism ; Phospholipase C gamma/pharmacology ; Vascular Endothelial Growth Factor A/metabolism ; Vascular Endothelial Growth Factors/metabolism ; Vascular Endothelial Growth Factors/pharmacology ; Vascular Endothelial Growth Factors/therapeutic use ; von Willebrand Factor/metabolism ; von Willebrand Factor/pharmacology ; von Willebrand Factor/therapeutic use
    Chemical Substances Vascular Endothelial Growth Factor A ; Vascular Endothelial Growth Factors ; von Willebrand Factor ; Phospholipase C gamma (EC 3.1.4.3)
    Language English
    Publishing date 2022-02-23
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 80085-5
    ISSN 1939-327X ; 0012-1797
    ISSN (online) 1939-327X
    ISSN 0012-1797
    DOI 10.2337/db21-0830
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: A subset of mobilized human hematopoietic stem cells express germ layer lineage genes which can be modulated by culture conditions.

    Makar, Tapas / Nimmagadda, Vamshi K / Guda, Poornachander R / Hampton, Brian / Huang, Weiliang / Kane, Maureen A / Fishman, Paul S / Pessac, Bernard / Bever, Christopher T / Trisler, David

    Stem cell research & therapy

    2018  Volume 9, Issue 1, Page(s) 127

    Abstract: Background: Adult bone marrow contains stem cells that replenish the myeloid and lymphoid lineages. A subset of human and mouse CD34: Methods: Human peripheral blood buffy coat cells and mobilized CD34: Results: We were able to culture CD34: ... ...

    Abstract Background: Adult bone marrow contains stem cells that replenish the myeloid and lymphoid lineages. A subset of human and mouse CD34
    Methods: Human peripheral blood buffy coat cells and mobilized CD34
    Results: We were able to culture CD34
    Conclusion: These results suggest a practical method for obtaining large numbers of CD34
    MeSH term(s) Animals ; Cell Differentiation ; Cell Lineage/genetics ; Cells, Cultured/metabolism ; Germ Layers/metabolism ; Hematopoietic Stem Cells/metabolism ; Humans ; Mice ; Mice, Inbred C57BL
    Language English
    Publishing date 2018-05-02
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 2548671-8
    ISSN 1757-6512 ; 1757-6512
    ISSN (online) 1757-6512
    ISSN 1757-6512
    DOI 10.1186/s13287-018-0858-5
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Glomerular mitochondrial changes in HIV associated renal injury.

    Bryant, Joseph L / Guda, Poornachander R / Asemu, Girma / Subedi, Rogin / Ray, Sugata / Khalid, Omar S / Shukla, Vivek / Patel, Dhruvil / Davis, Harry / Nimmagadda, Vamshi K C / Makar, Tapas K

    Experimental and molecular pathology

    2018  Volume 104, Issue 3, Page(s) 175–189

    Abstract: HIV-associated nephropathy (HIVAN) is an AIDs-related disease of the kidney. HIVAN is characterized by severe proteinuria, podocyte hyperplasia, collapse, glomerular, and tubulointerstitial damage. HIV-1 transgenic (Tg26) mouse is the most popular model ... ...

    Abstract HIV-associated nephropathy (HIVAN) is an AIDs-related disease of the kidney. HIVAN is characterized by severe proteinuria, podocyte hyperplasia, collapse, glomerular, and tubulointerstitial damage. HIV-1 transgenic (Tg26) mouse is the most popular model to study the HIV manifestations that develop similar renal presentations as HIVAN. Viral proteins, including Tat, Nef, and Vpr play a significant role in renal cell damage. It has been shown that mitochondrial changes are involved in several kidney diseases, and therefore, mitochondrial dysfunction may be implicated in the pathology of HIVAN. In the present study, we investigated the changes of mitochondrial homeostasis, biogenesis, dynamics, mitophagy, and examined the role of reactive oxygen species (ROS) generation and apoptosis in the Tg26 mouse model. The Tg26 mice showed significant impairment of kidney function, which was accompanied by increased blood urea nitrogen (BUN), creatinine and protein urea level. In addition, histological, western blot and PCR analysis of the Tg26 mice kidneys showed a downregulation of NAMPT, SIRT1, and SIRT3 expressions levels. Furthermore, the kidney of the Tg26 mice showed a downregulation of PGC1α, MFN2, and PARKIN, which are coupled with decrease of mitochondrial biogenesis, imbalance of mitochondrial dynamics, and downregulation of mitophagy, respectively. Furthermore, our results indicate that mitochondrial dysfunction were associated with ER stress, ROS generation and apoptosis. These results strongly suggest that the impaired mitochondrial morphology, homeostasis, and function associated with HIVAN. These findings indicated that a new insight on pathological mechanism associated with mitochondrial changes in HIVAN and a potential therapeutic target.
    MeSH term(s) AIDS-Associated Nephropathy/etiology ; AIDS-Associated Nephropathy/pathology ; Animals ; Apoptosis ; Cell Proliferation ; Disease Models, Animal ; Female ; HIV Infections/complications ; HIV Infections/virology ; HIV-1/isolation & purification ; Humans ; Kidney Glomerulus/pathology ; Kidney Glomerulus/virology ; Mice ; Mice, Transgenic ; Mitochondria/pathology ; Mitochondria/virology ; Signal Transduction
    Language English
    Publishing date 2018-03-31
    Publishing country Netherlands
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 207655-x
    ISSN 1096-0945 ; 0014-4800
    ISSN (online) 1096-0945
    ISSN 0014-4800
    DOI 10.1016/j.yexmp.2018.03.004
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Renal aquaporin-4 associated pathology in TG-26 mice.

    Bryant, Joseph L / Guda, Poornachander R / Ray, Sugata / Asemu, Girma / Sagi, Avinash R / Mubariz, Fahad / Arvas, Muhammed I / Khalid, Omar S / Shukla, Vivek / Nimmagadda, Vamshi K C / Makar, Tapas K

    Experimental and molecular pathology

    2018  Volume 104, Issue 3, Page(s) 239–249

    Abstract: Human immunodeficiency virus-associated nephropathy (HIVAN) is a leading cause of end-stage renal disease in HIV patients, which is characterized by glomerulosclerosis and renal tubular dysfunction. Aquaporin-4 (AQP-4) is a membrane bound water channel ... ...

    Abstract Human immunodeficiency virus-associated nephropathy (HIVAN) is a leading cause of end-stage renal disease in HIV patients, which is characterized by glomerulosclerosis and renal tubular dysfunction. Aquaporin-4 (AQP-4) is a membrane bound water channel protein that plays a distinct role in water reabsorption from renal tubular fluid. It has been proven that failure of AQP-4 insertion into the renal tubular membrane leads to renal dysfunction. However, the role of AQP-4 in HIVAN is unclear. We hypothesize that impaired water reabsorption leads to renal injury in HIVAN, where AQP-4 plays a crucial role. Renal function is assessed by urinary protein and serum blood urea nitrogen (BUN). Kidneys from HIV Transgenic (TG26) mice (HIVAN animal model) were compared to wild type mice by immunostaining, immunoblotting and quantitative RT-PCR. TG26 mice had increased proteinuria and BUN. We found decreased AQP-4 levels in the renal medulla, increased endothelin-1, endothelin receptor A and reduced Sirtuin1 (SIRT-1) levels in TG26 mice. Also, oxidative and endoplasmic reticulum stress was enhanced in kidneys of TG26 mice. We provide the first evidence that AQP-4 is inhibited due to induction of HIV associated stress in the kidneys of TG26 mice which limits water reabsorption in the kidney which may be one of the cause associated with HIVAN, impairing kidney physiology. AQP-4 dysregulation in TG26 mice suggests that similar changes may occur in HIVAN patients. This work may identify new therapeutic targets to be evaluated in HIVAN.
    MeSH term(s) AIDS-Associated Nephropathy/etiology ; AIDS-Associated Nephropathy/pathology ; Animals ; Aquaporin 4/physiology ; Disease Models, Animal ; Endoplasmic Reticulum Stress ; Female ; HIV Infections/complications ; HIV Infections/virology ; HIV-1/isolation & purification ; Humans ; Kidney/pathology ; Kidney/virology ; Male ; Mice ; Mice, Transgenic ; Oxidative Stress ; Signal Transduction ; Sirtuin 1/genetics ; Sirtuin 1/metabolism
    Chemical Substances Aqp4 protein, mouse ; Aquaporin 4 ; Sirt1 protein, mouse (EC 3.5.1.-) ; Sirtuin 1 (EC 3.5.1.-)
    Language English
    Publishing date 2018-03-31
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 207655-x
    ISSN 1096-0945 ; 0014-4800
    ISSN (online) 1096-0945
    ISSN 0014-4800
    DOI 10.1016/j.yexmp.2018.03.005
    Database MEDical Literature Analysis and Retrieval System OnLINE

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