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  1. Article ; Online: Reply to: Genome-wide association studies of polygenic risk score-derived phenotypes may lead to inflated false positive rates.

    Guerreiro, Rita / Bras, Jose

    Scientific reports

    2023  Volume 13, Issue 1, Page(s) 4264

    MeSH term(s) Humans ; Genome-Wide Association Study ; Phenotype ; Multifactorial Inheritance/genetics ; Risk Factors ; Genetic Predisposition to Disease ; Polymorphism, Single Nucleotide
    Language English
    Publishing date 2023-03-14
    Publishing country England
    Document type Letter ; Comment
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-023-29953-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Challenge accepted: uncovering the role of rare genetic variants in Alzheimer's disease.

    Khani, Marzieh / Gibbons, Elizabeth / Bras, Jose / Guerreiro, Rita

    Molecular neurodegeneration

    2022  Volume 17, Issue 1, Page(s) 3

    Abstract: The search for rare variants in Alzheimer's disease (AD) is usually deemed a high-risk - high-reward situation. The challenges associated with this endeavor are real. Still, the application of genome-wide technologies to large numbers of cases and ... ...

    Abstract The search for rare variants in Alzheimer's disease (AD) is usually deemed a high-risk - high-reward situation. The challenges associated with this endeavor are real. Still, the application of genome-wide technologies to large numbers of cases and controls or to small, well-characterized families has started to be fruitful.Rare variants associated with AD have been shown to increase risk or cause disease, but also to protect against the development of AD. All of these can potentially be targeted for the development of new drugs.Multiple independent studies have now shown associations of rare variants in NOTCH3, TREM2, SORL1, ABCA7, BIN1, CLU, NCK2, AKAP9, UNC5C, PLCG2, and ABI3 with AD and suggested that they may influence disease via multiple mechanisms. These genes have reported functions in the immune system, lipid metabolism, synaptic plasticity, and apoptosis. However, the main pathway emerging from the collective of genes harboring rare variants associated with AD is the Aβ pathway. Associations of rare variants in dozens of other genes have also been proposed, but have not yet been replicated in independent studies. Replication of this type of findings is one of the challenges associated with studying rare variants in complex diseases, such as AD. In this review, we discuss some of these primary challenges as well as possible solutions.Integrative approaches, the availability of large datasets and databases, and the development of new analytical methodologies will continue to produce new genes harboring rare variability impacting AD. In the future, more extensive and more diverse genetic studies, as well as studies of deeply characterized families, will enhance our understanding of disease pathogenesis and put us on the correct path for the development of successful drugs.
    MeSH term(s) ATP-Binding Cassette Transporters/genetics ; Adaptor Proteins, Signal Transducing/genetics ; Alzheimer Disease/genetics ; Genetic Predisposition to Disease/genetics ; Genome-Wide Association Study ; Humans ; LDL-Receptor Related Proteins/genetics ; Membrane Transport Proteins
    Chemical Substances ABI3 protein, human ; ATP-Binding Cassette Transporters ; Adaptor Proteins, Signal Transducing ; LDL-Receptor Related Proteins ; Membrane Transport Proteins ; SORL1 protein, human
    Language English
    Publishing date 2022-01-09
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Review
    ZDB-ID 2244557-2
    ISSN 1750-1326 ; 1750-1326
    ISSN (online) 1750-1326
    ISSN 1750-1326
    DOI 10.1186/s13024-021-00505-9
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Correction: Challenge accepted: Uncovering the role of rare genetic variants in Alzheimer's disease.

    Khani, Marzieh / Gibbons, Elizabeth / Bras, Jose / Guerreiro, Rita

    Molecular neurodegeneration

    2022  Volume 17, Issue 1, Page(s) 70

    Language English
    Publishing date 2022-11-01
    Publishing country England
    Document type Published Erratum
    ZDB-ID 2244557-2
    ISSN 1750-1326 ; 1750-1326
    ISSN (online) 1750-1326
    ISSN 1750-1326
    DOI 10.1186/s13024-022-00575-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Erratum to: How understudied populations have contributed to our understanding of Alzheimer's disease genetics.

    Dehghani, Nadia / Bras, Jose / Guerreiro, Rita

    Brain : a journal of neurology

    2021  Volume 144, Issue 8, Page(s) e69

    Language English
    Publishing date 2021-05-20
    Publishing country England
    Document type Published Erratum
    ZDB-ID 80072-7
    ISSN 1460-2156 ; 0006-8950
    ISSN (online) 1460-2156
    ISSN 0006-8950
    DOI 10.1093/brain/awab180
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  5. Article ; Online: How understudied populations have contributed to our understanding of Alzheimer's disease genetics.

    Dehghani, Nadia / Bras, Jose / Guerreiro, Rita

    Brain : a journal of neurology

    2021  Volume 144, Issue 4, Page(s) 1067–1081

    Abstract: The majority of genome-wide association studies have been conducted using samples with a broadly European genetic background. As a field, we acknowledge this limitation and the need to increase the diversity of populations studied. A major challenge when ...

    Abstract The majority of genome-wide association studies have been conducted using samples with a broadly European genetic background. As a field, we acknowledge this limitation and the need to increase the diversity of populations studied. A major challenge when designing and conducting such studies is to assimilate large samples sizes so that we attain enough statistical power to detect variants associated with disease, particularly when trying to identify variants with low and rare minor allele frequencies. In this review, we aimed to illustrate the benefits to genetic characterization of Alzheimer's disease, in researching currently understudied populations. This is important for both fair representation of world populations and the translatability of findings. To that end, we conducted a literature search to understand the contributions of studies, on different populations, to Alzheimer's disease genetics. Using both PubMed and Alzforum Mutation Database, we systematically quantified the number of studies reporting variants in known disease-causing genes, in a worldwide manner, and discuss the contributions of research in understudied populations to the identification of novel genetic factors in this disease. Additionally, we compared the effects of genome-wide significant single nucleotide polymorphisms across populations by focusing on loci that show different association profiles between populations (a key example being APOE). Reports of variants in APP, PSEN1 and PSEN2 can initially determine whether patients from a country have been studied for Alzheimer's disease genetics. Most genome-wide significant associations in non-Hispanic white genome-wide association studies do not reach genome-wide significance in such studies of other populations, with some suggesting an opposite effect direction; this is likely due to much smaller sample sizes attained. There are, however, genome-wide significant associations first identified in understudied populations which have yet to be replicated. Familial studies in understudied populations have identified rare, high effect variants, which have been replicated in other populations. This work functions to both highlight how understudied populations have furthered our understanding of Alzheimer's disease genetics, and to help us gauge our progress in understanding the genetic architecture of this disease in all populations.
    MeSH term(s) Alzheimer Disease/genetics ; Humans ; Minority Groups
    Language English
    Publishing date 2021-05-09
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Review
    ZDB-ID 80072-7
    ISSN 1460-2156 ; 0006-8950
    ISSN (online) 1460-2156
    ISSN 0006-8950
    DOI 10.1093/brain/awab028
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Genetics of synucleins in neurodegenerative diseases.

    Brás, José / Gibbons, Elizabeth / Guerreiro, Rita

    Acta neuropathologica

    2020  Volume 141, Issue 4, Page(s) 471–490

    Abstract: The SNCA locus currently has an indisputable role in Parkinson's disease and other synucleinopathies. The role of genetic variability in the other members of the synuclein family (SNCB and SNCG) in disease is far less clear. In this review, we critically ...

    Abstract The SNCA locus currently has an indisputable role in Parkinson's disease and other synucleinopathies. The role of genetic variability in the other members of the synuclein family (SNCB and SNCG) in disease is far less clear. In this review, we critically assess the pathogenicity, main characteristics, and roles of genetic variants in these genes reported to be causative of synucleinopathies. We also summarize the different association signals identified in the SNCA locus that have been associated with risk for disease. We take a bird's eye view of the variability currently reported in the general population for the three genes and use these data to infer on the potential relationship between each of the genes and human disease.
    MeSH term(s) Animals ; Humans ; Neurodegenerative Diseases/genetics ; Synucleinopathies/genetics ; Synucleins/genetics
    Chemical Substances Synucleins
    Language English
    Publishing date 2020-08-01
    Publishing country Germany
    Document type Journal Article ; Review
    ZDB-ID 1079-0
    ISSN 1432-0533 ; 0001-6322
    ISSN (online) 1432-0533
    ISSN 0001-6322
    DOI 10.1007/s00401-020-02202-1
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Genome-wide association of polygenic risk extremes for Alzheimer's disease in the UK Biobank.

    Gouveia, Catarina / Gibbons, Elizabeth / Dehghani, Nadia / Eapen, James / Guerreiro, Rita / Bras, Jose

    Scientific reports

    2022  Volume 12, Issue 1, Page(s) 8404

    Abstract: In just over a decade, advances in genome-wide association studies (GWAS) have offered an approach to stratify individuals based on genetic risk for disease. Using recent Alzheimer's disease (AD) GWAS results as the base data, we determined each ... ...

    Abstract In just over a decade, advances in genome-wide association studies (GWAS) have offered an approach to stratify individuals based on genetic risk for disease. Using recent Alzheimer's disease (AD) GWAS results as the base data, we determined each individual's polygenic risk score (PRS) in the UK Biobank dataset. Using individuals within the extreme risk distribution, we performed a GWAS that is agnostic of AD phenotype and is instead based on known genetic risk for disease. To interpret the functions of the new risk factors, we conducted phenotype analyses, including a phenome-wide association study. We identified 246 loci surpassing the significance threshold of which 229 were not reported in the base AD GWAS. These include loci that showed suggestive levels of association in the base GWAS and loci not previously suspected to be associated with AD. Among these, there are loci, such as IL34 and KANSL1, that have since been shown to be associated with AD in recent studies. We also show highly significant genetic correlations with multiple health-related outcomes that provide insights into prodromal symptoms and comorbidities. This is the first study to utilize PRS as a phenotype-agnostic group classification in AD genetic studies. We identify potential new loci for AD and detail phenotypic analysis of these PRS extremes.
    MeSH term(s) Alzheimer Disease/diagnosis ; Alzheimer Disease/genetics ; Biological Specimen Banks ; Genetic Predisposition to Disease ; Genome-Wide Association Study ; Humans ; Multifactorial Inheritance/genetics ; Polymorphism, Single Nucleotide ; Risk Factors ; United Kingdom
    Language English
    Publishing date 2022-05-19
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, N.I.H., Extramural
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-022-12391-2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: A Era da Multirresistência: Incidência em Dez Anos Numa Unidade de Cuidados Intensivos Neonatais.

    Sanches, Bruno / Guerreiro, Rita / Diogo, José / Cabral, Margarida / Gomes, António

    Acta medica portuguesa

    2020  Volume 33, Issue 3, Page(s) 183–190

    Abstract: Introduction: The emergence of multidrug-resistant bacteria is a medical challenge nowadays. The objective of the present study was to determine the incidence of multidrug-resistant bacteria infections in a neonatal Intensive Care unit.: Material and ... ...

    Title translation The Age of Multidrug Resistance: Ten Year Incidence in a Neonatal Intensive Care Unit.
    Abstract Introduction: The emergence of multidrug-resistant bacteria is a medical challenge nowadays. The objective of the present study was to determine the incidence of multidrug-resistant bacteria infections in a neonatal Intensive Care unit.
    Material and methods: Retrospective, descriptive, incidence study of infectious episodes by multidrug-resistant bacteria from 2008 to 2017 in a differentiated perinatal support unit.
    Results: Sixty-four infectious episodes included (median gestational age of 28 weeks and birth weight of 885 g). The isolated bacteria were: Enterobacteriaceae (n = 46); Methicillin-resistant Staphylococcus aureus (n = 12); Acinetobacter baumannii (n = 4); Pseudomonas aeruginosa (n = 2). A risk factor was identified in 90.6% of the episodes, with emphasis on central catheter (89%) and previous antibiotic therapy (78%). The lethality rate of these infections was 10.9% (Unit mortality rate: 4.4%). The overall incidence rate was 3.2 infectious episodes/100 hospitalizations, corresponding to 1.7 episodes/1000 days of hospitalization. There were three infectious outbreaks, with an increasing impact of Enterobacteriaceae.
    Discussion: The reported incidence rate reflects a risk population, hospitalized in an Intensive Care unit, over a long period of time. The distribution of isolated bacteria, with Enterobacteriaceae predominance, is in accordance with the shift in multidrug resistance reported worldwide. The outbreaks point to the need of understanding risk factors and means of local dissemination. The relevance of these infections is evident in their lethality rate, which is higher compared to that of general hospital infections.
    Conclusion: The incidence rate reflects the local dimension of the problem, representing a quality indicator which is relevant for controlling these infections.
    MeSH term(s) Acinetobacter baumannii/drug effects ; Bacterial Infections/drug therapy ; Bacterial Infections/epidemiology ; Bacterial Infections/microbiology ; Cross Infection/drug therapy ; Cross Infection/epidemiology ; Cross Infection/microbiology ; Drug Resistance, Multiple, Bacterial ; Enterobacteriaceae/drug effects ; Escherichia coli/drug effects ; Female ; Gestational Age ; Humans ; Incidence ; Infant, Newborn ; Intensive Care Units, Neonatal/statistics & numerical data ; Klebsiella pneumoniae/drug effects ; Male ; Methicillin-Resistant Staphylococcus aureus ; Pseudomonas aeruginosa/drug effects ; Retrospective Studies ; Time Factors
    Language Portuguese
    Publishing date 2020-03-02
    Publishing country Portugal
    Document type Journal Article
    ZDB-ID 603078-6
    ISSN 1646-0758 ; 0870-399X
    ISSN (online) 1646-0758
    ISSN 0870-399X
    DOI 10.20344/amp.12504
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  9. Article ; Online: Cost-effectiveness of cladribine tablets versus fingolimod in patients with highly active relapsing multiple sclerosis in Portugal.

    Pinheiro, Bernardete / Guerreiro, Rita / Costa, João / Miguel, Luís Silva

    Journal of medical economics

    2020  Volume 23, Issue 5, Page(s) 484–491

    Abstract: Aims: ...

    Abstract Aims:
    MeSH term(s) Adult ; Age of Onset ; Cladribine/adverse effects ; Cladribine/economics ; Cladribine/therapeutic use ; Cost-Benefit Analysis ; Disease Progression ; Female ; Fingolimod Hydrochloride/adverse effects ; Fingolimod Hydrochloride/economics ; Fingolimod Hydrochloride/therapeutic use ; Health Expenditures/statistics & numerical data ; Health Resources/economics ; Health Resources/statistics & numerical data ; Humans ; Immunosuppressive Agents/adverse effects ; Immunosuppressive Agents/economics ; Immunosuppressive Agents/therapeutic use ; Male ; Markov Chains ; Middle Aged ; Models, Economic ; Multiple Sclerosis, Relapsing-Remitting/drug therapy ; Portugal ; Quality-Adjusted Life Years
    Chemical Substances Immunosuppressive Agents ; Cladribine (47M74X9YT5) ; Fingolimod Hydrochloride (G926EC510T)
    Language English
    Publishing date 2020-02-10
    Publishing country England
    Document type Journal Article
    ZDB-ID 2270945-9
    ISSN 1941-837X ; 1369-6998
    ISSN (online) 1941-837X
    ISSN 1369-6998
    DOI 10.1080/13696998.2020.1717499
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  10. Article: The genetic landscape of Alzheimer disease.

    Carmona, Susana / Hardy, John / Guerreiro, Rita

    Handbook of clinical neurology

    2018  Volume 148, Page(s) 395–408

    Abstract: Alzheimer disease (AD), a progressive and neurodegenerative disease, is the most common form of dementia with high incidence in elderly people. Neuropathologically the disease is defined by the combined presence of extracellular amyloid-beta (Aβ) plaques ...

    Abstract Alzheimer disease (AD), a progressive and neurodegenerative disease, is the most common form of dementia with high incidence in elderly people. Neuropathologically the disease is defined by the combined presence of extracellular amyloid-beta (Aβ) plaques and intracellular neurofibrillary tangles of phosphorylated tau protein. Genetically, the first clues were provided by genetic linkage studies that led to the identification of APP, PSEN1, and PSEN2 mutations as the main causes of autosomal-dominant early-onset AD. Another important hallmark was the identification of the APOE ɛ4 allele as a risk factor for late-onset AD. Over the last 20 years the development and implementation of new genetic and genomic technologies have allowed the identification of other genetic players in this disease. Genome-wide association studies identified more than 20 loci with common variability having small contributions to the susceptibility of AD. The majority of the genes mapped in these loci are known to be involved in specific biologic pathways: cholesterol metabolism, immune response, and endocytosis. More recently, the application of next-generation sequencing (mainly whole-exome sequencing) has begun to reveal the contribution of rarer variants with medium effects on risk for AD. This area of research has come a long way with many and important results allowing a better understanding of the disease. More efforts are still needed, however, to fully understand the etiology of this disease in order to establish reliable individual predictive models and put us closer to the development of a curative, preventive, or modulator drug.
    MeSH term(s) Alzheimer Disease/genetics ; Genetic Linkage ; Genetic Predisposition to Disease/genetics ; Genome-Wide Association Study ; Humans ; Mutation/genetics
    Language English
    Publishing date 2018
    Publishing country Netherlands
    Document type Journal Article ; Review
    ISSN 0072-9752
    ISSN 0072-9752
    DOI 10.1016/B978-0-444-64076-5.00026-0
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