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  1. Article ; Online: Determination of antibiotic resistance patterns and genotypes of Escherichia coli isolated from wild birds.

    Ahmed, Nejash A / Gulhan, Timur

    Microbiome

    2024  Volume 12, Issue 1, Page(s) 8

    Abstract: Background: Curbing the potential negative impact of antibiotic resistance, one of our era's growing global public health crises, requires regular monitoring of the resistance situations, including the reservoir of resistance genes. Wild birds, a ... ...

    Abstract Background: Curbing the potential negative impact of antibiotic resistance, one of our era's growing global public health crises, requires regular monitoring of the resistance situations, including the reservoir of resistance genes. Wild birds, a possible bioindicator of antibiotic resistance, have been suggested to play a role in the dissemination of antibiotic-resistant bacteria. Therefore, this study was conducted with the objective of determining the phenotypic and genotypic antibiotic resistance profiles of 100 Escherichia coli isolates of gull and pigeon origin by using the Kirby-Bauer disk diffusion method and PCR. Furthermore, the genetic relationships of the isolates were determined by RAPD-PCR.
    Results: Phenotypic antibiotic susceptibility testing revealed that 63% (63/100) and 29% (29/100) of E. coli isolates were resistant to at least one antibiotic and multidrug-resistant (MDR), respectively. With the exception of cephalothin, to which the E. coli isolates were 100% susceptible, tetracycline (52%), kanamycin (38%), streptomycin (37%), ampicillin (28%), chloramphenicol (21%), trimethoprim/sulfamethoxazole (19%), gentamicin (13%), enrofloxacin (12%) and ciprofloxacin (12%) resistances were detected at varying degrees. Among the investigated resistance genes, tet(B) (66%), tet(A) (63%), aphA1 (48%), sul3 (34%), sul2 (26%), strA/strB (24%) and sul1 (16%) were detected. Regarding the genetic diversity of the isolates, the RAPD-PCR-based dendrograms divided both pigeon and gull isolates into five different clusters based on a 70% similarity threshold. Dendrogram analysis revealed 47-100% similarities among pigeon-origin strains and 40-100% similarities among gull-origin E.coli strains.
    Conclusions: This study revealed that gulls and pigeons carry MDR E. coli isolates, which may pose a risk to animal and human health by contaminating the environment with their feces. However, a large-scale epidemiological study investigating the genetic relationship of the strains from a "one health" point of view is warranted to determine the possible transmission patterns of antibiotic-resistant bacteria between wild birds, the environment, humans, and other hosts. Video Abstract.
    MeSH term(s) Animals ; Humans ; Escherichia coli/genetics ; Random Amplified Polymorphic DNA Technique ; Birds ; Genotype ; Anti-Bacterial Agents/pharmacology ; Drug Resistance, Microbial
    Chemical Substances Anti-Bacterial Agents
    Language English
    Publishing date 2024-01-08
    Publishing country England
    Document type Video-Audio Media ; Journal Article
    ZDB-ID 2697425-3
    ISSN 2049-2618 ; 2049-2618
    ISSN (online) 2049-2618
    ISSN 2049-2618
    DOI 10.1186/s40168-023-01729-1
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Campylobacter

    Ahmed, Nejash A / Gulhan, Timur

    Frontiers in microbiology

    2022  Volume 12, Page(s) 812591

    Abstract: Campylobacteriosis continues to be one of the leading causes of foodborne bacterial zoonotic infections worldwide. Despite its public health importance, the status of this disease in wild birds and the possibility of transmission from wild birds to ... ...

    Abstract Campylobacteriosis continues to be one of the leading causes of foodborne bacterial zoonotic infections worldwide. Despite its public health importance, the status of this disease in wild birds and the possibility of transmission from wild birds to domestic animals and humans have not been clearly elucidated yet. This article reviews the available literature with the aim of making a comprehensive manuscript on this disease status in wild birds and the possibility of interspecies transmission.
    Language English
    Publishing date 2022-02-10
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2587354-4
    ISSN 1664-302X
    ISSN 1664-302X
    DOI 10.3389/fmicb.2021.812591
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: A study regarding the fertility discrimination of eggs by using ultrasound

    Önler, Eray / Çelen, Ilker H / Gulhan, Timur / Boynukara, Banur

    Indian journal of animal research. 2017 Apr., v. 51, no. 2

    2017  

    Abstract: or not. A digital imaging system has been developed in order to take an image from six different points without damaging the egg shell. All the images were transferred to a PC and turned into binary images. All the images were reduced to 1024 pixels and ... ...

    Abstract or not. A digital imaging system has been developed in order to take an image from six different points without damaging the egg shell. All the images were transferred to a PC and turned into binary images. All the images were reduced to 1024 pixels and fed directly into the classification algorithm. The logistic regression method was used to discriminate the fertility of the eggs. Python programming language and the scikit-learn machine learning library was used to carry out the classifications. True positive, true negative, wrong positive, and wrong negative detection numbers in the trials were 350, 344, 56, and 50, respectively. Negative indicates the egg was infertile, and positive indicated that the egg was fertilized. The model accuracy was measured as 0.8675.
    Keywords algorithms ; animal research ; egg shell ; eggs ; regression analysis ; ultrasonics
    Language English
    Dates of publication 2017-04
    Size p. 322-326.
    Publishing place Agricultural Research Communication Centre
    Document type Article
    Note NAL-light
    ZDB-ID 286423-x
    ISSN 0367-6722
    ISSN 0367-6722
    DOI 10.18805/ijar.v0iOF.4561
    Database NAL-Catalogue (AGRICOLA)

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  4. Article: Classical enterotoxigenic characteristics of Staphylococcus aureus strains isolated from bovine subclinical mastitis in Van, Turkey.

    Boynukara, Banur / Gulhan, Timur / Alisarli, Mustafa / Gurturk, Kemal / Solmaz, Hasan

    International journal of food microbiology

    2008  Volume 125, Issue 2, Page(s) 209–211

    Abstract: The aim of the present study was to investigate classical enterotoxigenic properties of Staphylococcus aureus strains isolated from cows with subclinical mastitis. For this purpose, 480 milk samples from cows with subclinical mastitis raised in different ...

    Abstract The aim of the present study was to investigate classical enterotoxigenic properties of Staphylococcus aureus strains isolated from cows with subclinical mastitis. For this purpose, 480 milk samples from cows with subclinical mastitis raised in different villages neighbouring Van city Center were collected. A total of 106 S. aureus strains were isolated. Twenty seven isolates (25.5%) were found to be enterotoxigenic by reverse passive latex agglutination (RPLA). Of these, 25 (23.6%) were positive for staphylococcal enterotoxin A (SEA), 2 (1.9%) for SEB. None of the isolates was positive for SEC or SED. This study showed that most S. aureus strains isolated from bovine subclinical mastitis produced SEA compared to other SEs.
    MeSH term(s) Animals ; Cattle ; Consumer Product Safety ; Enterotoxins/biosynthesis ; Female ; Food Contamination/analysis ; Food Contamination/prevention & control ; Food Microbiology ; Humans ; Mastitis, Bovine/microbiology ; Milk/microbiology ; Staphylococcal Food Poisoning/microbiology ; Staphylococcal Food Poisoning/prevention & control ; Staphylococcal Infections/microbiology ; Staphylococcal Infections/veterinary ; Staphylococcus aureus/metabolism ; Turkey
    Chemical Substances Enterotoxins ; enterotoxin A, Staphylococcal (37337-57-8) ; enterotoxin B, staphylococcal (39424-53-8)
    Language English
    Publishing date 2008-07-15
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 87122-9
    ISSN 1879-3460 ; 0168-1605
    ISSN (online) 1879-3460
    ISSN 0168-1605
    DOI 10.1016/j.ijfoodmicro.2008.03.024
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Evolution of slime production by coagulase-negative staphylococci and enterotoxigenic characteristics of Staphylococcus aureus strains isolated from various human clinical specimens.

    Boynukara, Banur / Gulhan, Timur / Gurturk, Kemal / Alisarli, Mustafa / Ogun, Erdal

    Journal of medical microbiology

    2007  Volume 56, Issue Pt 10, Page(s) 1296–1300

    Abstract: The present study was designed to determine the slime production of coagulase-negative staphylococci (CoNS) and the enterotoxigenic properties of Staphylococcus aureus strains, and to evaluate the clinical importance of slime-producing CoNS and ... ...

    Abstract The present study was designed to determine the slime production of coagulase-negative staphylococci (CoNS) and the enterotoxigenic properties of Staphylococcus aureus strains, and to evaluate the clinical importance of slime-producing CoNS and enterotoxigenic S. aureus strains isolated from various human clinical specimens. For this purpose, a total of 120 Staphylococcus strains were isolated and identified, and further characterized for their slime production and enterotoxigenicity. Of the clinical isolates, 55 (45.8 %) were found to be S. aureus, and the others (54.2 %) were identified as CoNS. Of the CoNS, 20 (16.7 %) were further identified as Staphylococcus hominis, 18 (15 %) as Staphylococcus epidermidis, six (5 %) as Staphylococcus xylosus, six (5 %) as Staphylococcus warneri, five (4.2 %) as Staphylococcus sciuri, four (3.3 %) as Staphylococcus haemolyticus, and two each (1.7 %) as Staphylococcus simulans, Staphylococcus capitis and Staphylococcus saprophyticus, respectively. Thirty-nine (60 %) of 65 CoNS were found to be slime producers. Slime production was observed in all CoNS, except S. capitis, mostly from blood (38.5 %), tracheal aspiration (20.5 %) and urine (12.8 %) specimens. In addition, of the 55 S. aureus isolates, 46 (83.6 %) were found to be enterotoxigenic, and of these S. aureus strains, 39 (84.7 %) were positive for staphylococcal enterotoxin (SE)A. The results of this study showed that the slime-producing CoNS were mostly found in clinical specimens of blood, tracheal aspirate and urine. SEA was the predominant enterotoxin type detected in S. aureus strains from human clinical specimens.
    MeSH term(s) Body Fluids/microbiology ; Coagulase/biosynthesis ; Enterotoxins/biosynthesis ; Enterotoxins/classification ; Humans ; Polysaccharides, Bacterial/biosynthesis ; Staphylococcal Infections/microbiology ; Staphylococcus/classification ; Staphylococcus/isolation & purification ; Staphylococcus/metabolism
    Chemical Substances Coagulase ; Enterotoxins ; Polysaccharides, Bacterial
    Language English
    Publishing date 2007-08-11
    Publishing country England
    Document type Journal Article
    ZDB-ID 218356-0
    ISSN 1473-5644 ; 0022-2615
    ISSN (online) 1473-5644
    ISSN 0022-2615
    DOI 10.1099/jmm.0.47140-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Classical enterotoxigenic characteristics of Staphylococcus aureus strains isolated from bovine subclinical mastitis in Van, Turkey

    Boynukara, Banur / Gulhan, Timur / Alisarli, Mustafa / Gurturk, Kemal / Solmaz, Hasan

    International journal of food microbiology. 2008 July 15, v. 125, no. 2

    2008  

    Abstract: The aim of the present study was to investigate classical enterotoxigenic properties of Staphylococcus aureus strains isolated from cows with subclinical mastitis. For this purpose, 480 milk samples from cows with subclinical mastitis raised in different ...

    Abstract The aim of the present study was to investigate classical enterotoxigenic properties of Staphylococcus aureus strains isolated from cows with subclinical mastitis. For this purpose, 480 milk samples from cows with subclinical mastitis raised in different villages neighbouring Van city Center were collected. A total of 106 S. aureus strains were isolated. Twenty seven isolates (25.5%) were found to be enterotoxigenic by reverse passive latex agglutination (RPLA). Of these, 25 (23.6%) were positive for staphylococcal enterotoxin A (SEA), 2 (1.9%) for SEB. None of the isolates was positive for SEC or SED. This study showed that most S. aureus strains isolated from bovine subclinical mastitis produced SEA compared to other SEs.
    Keywords dairy cows ; raw milk ; isolation ; Staphylococcus aureus subsp. aureus ; serotypes ; bovine mastitis ; enterotoxins ; staphylococcal intoxication ; food pathogens ; animal pathogenic bacteria ; bacterial contamination ; Turkey (country)
    Language English
    Dates of publication 2008-0715
    Size p. 209-211.
    Publishing place [Amsterdam; New York, NY]: Elsevier Science
    Document type Article
    ZDB-ID 87122-9
    ISSN 1879-3460 ; 0168-1605
    ISSN (online) 1879-3460
    ISSN 0168-1605
    DOI 10.1016/j.ijfoodmicro.2008.03.024
    Database NAL-Catalogue (AGRICOLA)

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  7. Article: Hayvan Orijinli Escherichia coli Suşlarının Enterotoksin Tiplerinin (LT,ST) Belirlenmesi

    GÜLHAN, Timur / İLHAN, Ziya / AKSAKAL, Abdulbaki / SOLMAZ, Hasan / EKIN, İsmail Hakkı

    Yüzüncü Yıl Üniversitesi Veteriner Fakültesi Dergisi; Yıl: 2009 Cilt: 20 Sayı: 2; 27-31

    Language Turkish
    Document type Article
    ISSN 1308-3651
    Database AGRIS - International Information System for the Agricultural Sciences and Technology

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