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Article ; Online: Identification and characterization of lipoxygenase (LOX) genes involved in abiotic stresses in yellow horn.

Hu, Fang / Zhang, Yunxiang / Guo, Jinping

2023 Volume 18, Issue 10, Page(s) e0292898

Abstract: Lipoxygenase (LOX) gene plays an essential role in plant growth, development, and stress response. 15 LOX genes were identified, which were unevenly distributed on chromosomes and divided into three subclasses in this study. In promoter region analysis, ... ...

Abstract	Lipoxygenase (LOX) gene plays an essential role in plant growth, development, and stress response. 15 LOX genes were identified, which were unevenly distributed on chromosomes and divided into three subclasses in this study. In promoter region analysis, many cis-elements were identified in growth and development, abiotic stress response, hormonal response, and light response. qRT-PCR showed that the LOX gene showed tissue specificity in seven tissues, especially XsLOX1, 3, and 7 were relatively highly expressed in roots, stems, and axillary buds. The different expression patterns of LOX genes in response to abiotic stress and hormone treatment indicate that different XsLOX genes have different reactions to these stresses and play diversified roles. This study improves our understanding of the mechanism of LOX regulation in plant growth, development, and stress and lays a foundation for further analysis of biological functions.
MeSH term(s)	Lipoxygenase/genetics ; Lipoxygenase/metabolism ; Stress, Physiological/genetics ; Gene Expression Regulation, Plant ; Phylogeny ; Plant Proteins/genetics ; Plant Proteins/metabolism
Chemical Substances	Lipoxygenase (EC 1.13.11.12) ; Plant Proteins
Language	English
Publishing date	2023-10-13
Publishing country	United States
Document type	Journal Article
ZDB-ID	2267670-3
ISSN	1932-6203 ; 1932-6203
ISSN (online)	1932-6203
ISSN	1932-6203
DOI	10.1371/journal.pone.0292898
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Article ; Online: Effects of drought stress on photosynthetic physiological characteristics, leaf microstructure, and related gene expression of yellow horn.

Hu, Fang / Zhang, Yunxiang / Guo, Jinping

Plant signaling & behavior

2023 Volume 18, Issue 1, Page(s) 2215025

Abstract: Yellow horn grows in northern China and has a high tolerance to drought and poor soil. Improving photosynthetic efficiency and increasing plant growth and yield under drought conditions have become important research content for researchers worldwide. ... ...

Abstract	Yellow horn grows in northern China and has a high tolerance to drought and poor soil. Improving photosynthetic efficiency and increasing plant growth and yield under drought conditions have become important research content for researchers worldwide. Our study goal is to provide comprehensive information on photosynthesis and some candidate genes breeding of yellow horn under drought stress. In this study, seedlings' stomatal conductance, chlorophyll content, and fluorescence parameters decreased under drought stress, but non-photochemical quenching increased. The leaf microstructure showed that stomata underwent a process from opening to closing, guard cells from complete to dry, and surrounding leaf cells from smooth to severe shrinkage. The chloroplast ultrastructure showed that the changes of starch granules were different under different drought stress, while plastoglobules increased and expanded continuously. In addition, we found some differentially expressed genes related to photosystem, electron transport component, oxidative phosphate ATPase, stomatal closure, and chloroplast ultrastructure. These results laid a foundation for further genetic improvement and deficit resistance breeding of yellow horn under drought stress.
MeSH term(s)	Droughts ; Photosynthesis/genetics ; Chlorophyll/metabolism ; Plant Leaves/genetics ; Plant Leaves/metabolism ; Gene Expression ; Water/metabolism ; Stress, Physiological/genetics
Chemical Substances	Chlorophyll (1406-65-1) ; Water (059QF0KO0R)
Language	English
Publishing date	2023-04-26
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ISSN	1559-2324
ISSN (online)	1559-2324
DOI	10.1080/15592324.2023.2215025
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Article ; Online: Correlation between ESR1 and APOE gene polymorphisms and risk of osteonecrosis of the femoral head: a case-control study.

Wang, Yuan / Ma, Xiaoya / Guo, Jinping / Li, Yujie / Xiong, Yuyan

Journal of orthopaedic surgery and research

2023 Volume 18, Issue 1, Page(s) 968

Abstract: Background: Osteonecrosis of the femoral head (ONFH) is a disease with a high disability rate, and genetic factors are closely related to its pathogenesis. This study aimed to investigate the possible correlation between ESR1 and APOE gene polymorphisms ...

Abstract	Background: Osteonecrosis of the femoral head (ONFH) is a disease with a high disability rate, and genetic factors are closely related to its pathogenesis. This study aimed to investigate the possible correlation between ESR1 and APOE gene polymorphisms and the risk of ONFH. Methods: In this case-control study, the potential association between three genetic variants (rs2982573 C < T, rs10872678 C < T, and rs9322332 A < C) of the ESR1 gene and two genetic variants (rs7259620 A < G and rs769446 C < T) of the APOE gene with the risk of ONFH was investigated. Correlations between gene polymorphisms and ONFH risk were assessed using logistic regression analysis, with calculation of odds ratios (ORs) and 95% confidence intervals (CIs). Results: The overall analysis demonstrated that rs9322332 in the ESR1 gene exhibited a correlation with a decreased risk of ONFH under the homozygous (AA vs.CC: OR = 0.69, 95% CI [0.53-0.90], p = 0.006), dominant (CA + AA vs. CC: OR = 0.70, 95% CI [0.54-0.90], p = 0.006), and additive (OR = 0.79, 95% CI [0.66-0.95], p = 0.013) models. The stratification analysis revealed that rs9322332 was linked to a lower risk of ONFH in subgroups characterized by individuals aged over 51 years and non-smokers. Nevertheless, there were no notable correlations found between ESR1 rs2982573 and rs10872678, as well as APOE rs7259620 and rs769446, with the risk of ONFH. Conclusion: ESR1-rs9322332 is closely linked to a decreased risk of ONFH, thereby enhancing our understanding of the relationship between gene polymorphisms and ONFH.
MeSH term(s)	Aged ; Humans ; Apolipoproteins E/genetics ; Case-Control Studies ; Femur Head ; Femur Head Necrosis/genetics ; Genetic Predisposition to Disease ; Polymorphism, Single Nucleotide ; Estrogen Receptor alpha/genetics
Chemical Substances	Apolipoproteins E ; ESR1 protein, human ; ApoE protein, human ; Estrogen Receptor alpha
Language	English
Publishing date	2023-12-15
Publishing country	England
Document type	Journal Article
ZDB-ID	2252548-8
ISSN	1749-799X ; 1749-799X
ISSN (online)	1749-799X
ISSN	1749-799X
DOI	10.1186/s13018-023-04447-4
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Article: [Effects of

Zhang, Shuai-Jun / Zhang, Jin / Guo, Jin-Ping / Niu, Ying-Peng

Zhongguo ying yong sheng li xue za zhi = Zhongguo yingyong shenglixue zazhi = Chinese journal of applied physiology

2023 Volume 38, Issue 6, Page(s) 670–675

Abstract: Objective: ...

Abstract	Objective:
MeSH term(s)	Male ; Animals ; Rats ; Rats, Sprague-Dawley ; Insulin Resistance ; Glucose Transporter Type 4 ; Rosa ; Phosphatidylinositol 3-Kinases ; Obesity ; Body Weight ; RNA, Messenger ; Superoxide Dismutase
Chemical Substances	Glucose Transporter Type 4 ; Phosphatidylinositol 3-Kinases (EC 2.7.1.-) ; RNA, Messenger ; Superoxide Dismutase (EC 1.15.1.1)
Language	Chinese
Publishing date	2023-06-12
Publishing country	China
Document type	English Abstract ; Journal Article
ISSN	1000-6834
ISSN	1000-6834
DOI	10.12047/j.cjap.6328.2022.122
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Article ; Online: Leaf nutrient resorption of two life-form tree species in urban gardens and their response to soil nutrient availability.

Hu, Ruyuan / Liu, Tairui / Zhang, Yunxiang / Zheng, Rongrong / Guo, Jinping

PeerJ

2023 Volume 11, Page(s) e15738

Abstract: Background: Leaf nutrient resorption is a key strategy in plant conservation that minimizes nutrient loss and enhances productivity. However, the differences of the nutrient resorption among garden tree species in urban ecosystems were not clearly ... ...

Abstract	Background: Leaf nutrient resorption is a key strategy in plant conservation that minimizes nutrient loss and enhances productivity. However, the differences of the nutrient resorption among garden tree species in urban ecosystems were not clearly understood, especially the differences of nitrogen resorption efficiency (NRE) and phosphorous resorption efficiency (PRE) between evergreen and deciduous trees. Methods: We selected 40 most generally used garden tree specie belonged two life forms (evergreen and deciduous) and investigated the nitrogen (N) and phosphorus (P) concentrations in green and senesced leaves and soil nutrient concentrations of nine samples trees for each species. Then, the nutrient concentrations and resorption efficiency were compared, and the soil nutrients utilization strategies were further analyzed. Results: The results showed that the N concentration was significantly higher in the green and senesced leaves of deciduous trees than in the leaves of evergreen trees. The two life-form trees were both N limited and evergreen trees were more sensitive to N limitation. The NRE and PRE in the deciduous trees were significantly higher than those in the evergreen trees. The NRE was significantly positively correlated with the PRE in the deciduous trees. As the soil N and P concentrations increased, the nutrient resorption efficiency (NuRE) of the evergreen trees increased, but that of the deciduous trees decreased. Compared with the deciduous trees, the evergreen trees were more sensitive to the feedback of soil N and P concentrations. These findings reveal the N and P nutrient resorption mechanism of evergreen and deciduous trees and fill a gap in the understanding of nutrient resorption in urban ecosystems.
MeSH term(s)	Trees/physiology ; Ecosystem ; Gardens ; Soil ; Phosphorus ; Plant Leaves/physiology ; Nitrogen ; Nutrients
Chemical Substances	Soil ; Phosphorus (27YLU75U4W) ; Nitrogen (N762921K75)
Language	English
Publishing date	2023-07-19
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2703241-3
ISSN	2167-8359 ; 2167-8359
ISSN (online)	2167-8359
ISSN	2167-8359
DOI	10.7717/peerj.15738
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Article ; Online: Identification and Characterization of AP2/ERF Transcription Factors in Yellow Horn.

Hu, Fang / Zhang, Yunxiang / Guo, Jinping

International journal of molecular sciences

2022 Volume 23, Issue 23

Abstract: The AP2/ERF gene family involves numerous plant processes, including growth, development, metabolism, and various plant stress responses. However, several studies have been conducted on the AP2/ERF gene family in yellow horn, a new type of oil woody crop ...

Abstract	The AP2/ERF gene family involves numerous plant processes, including growth, development, metabolism, and various plant stress responses. However, several studies have been conducted on the AP2/ERF gene family in yellow horn, a new type of oil woody crop and an essential oil crop in China. According to sequence alignment and phylogenetic analyses, one hundred and forty-five AP2/ERF genes were detected from the yellow horn genome. They were divided into four relatively conserved subfamilies, including 21 AP2 genes, 119 ERBP genes, 4 RAV genes, and 1 Soloist gene. Gene analysis of
Language	English
Publishing date	2022-11-30
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	2019364-6
ISSN	1422-0067 ; 1422-0067 ; 1661-6596
ISSN (online)	1422-0067
ISSN	1422-0067 ; 1661-6596
DOI	10.3390/ijms232314991
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Article ; Online: Genetic polymorphisms in CYP2B6 may be associated with lung cancer risk in the Chinese Han population.

Ma, Xiaoya / Zang, Xufeng / Yang, Leteng / Zhou, Wenqian / Li, Yujie / Wei, Jie / Guo, Jinping / Han, Junhui / Liang, Jing / Jin, Tianbo

Expert review of respiratory medicine

2024 Volume 17, Issue 12, Page(s) 1297–1305

Abstract: Background: Our study aimed to elucidate the association between single nucleotide polymorphisms (SNPs) in CYP2B6 gene and susceptibility to lung cancer (LC).: Methods: Five SNPs in CYP2B6 were genotyped in Chinese Han population (507 cases and 505 ... ...

Abstract	Background: Our study aimed to elucidate the association between single nucleotide polymorphisms (SNPs) in CYP2B6 gene and susceptibility to lung cancer (LC). Methods: Five SNPs in CYP2B6 were genotyped in Chinese Han population (507 cases and 505 controls) utilizing Agena MassARRAY. The relationship between these SNPs and LC susceptibility was assessed using odds ratios, 95% confidence intervals, and χ2 tests. Additionally, multifactor dimensionality reduction was employed to analyze SNP-SNP interactions. Bioinformatics methods were applied to investigate the function of these SNPs. Results: We found that rs2099361 was associated with an increased susceptibility to LC in the codominant model (OR = 1.31, Conclusions: Our results suggest that SNPs in the CYP2B6 gene play crucial roles in LC susceptibility.
MeSH term(s)	Humans ; Cytochrome P-450 CYP2B6/genetics ; Lung Neoplasms/genetics ; Genetic Predisposition to Disease ; Gene Frequency ; Genotype ; Polymorphism, Single Nucleotide ; China/epidemiology
Chemical Substances	Cytochrome P-450 CYP2B6 (EC 1.14.14.1) ; CYP2B6 protein, human (EC 1.14.14.1)
Language	English
Publishing date	2024-01-04
Publishing country	England
Document type	Journal Article
ZDB-ID	2479146-5
ISSN	1747-6356 ; 1747-6348
ISSN (online)	1747-6356
ISSN	1747-6348
DOI	10.1080/17476348.2024.2302199
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Article: Response of bacterial community structure to different phosphorus additions in a tobacco-growing soil.

Zhou, Beibei / Cheng, Shiqian / Peng, Shuang / Li, Wenqing / Li, Chunying / Wang, Qianqian / Wang, Yiming / Guo, Jinping

Frontiers in plant science

2024 Volume 15, Page(s) 1344733

Abstract: Introduction: Phosphorus (P), which plays a vital role in plant growth, is continually added to soil to maximize biomass production, leading to excessive P accumulation and water eutrophication.: Results: In this study, a pot experiment using a ... ...

Abstract	Introduction: Phosphorus (P), which plays a vital role in plant growth, is continually added to soil to maximize biomass production, leading to excessive P accumulation and water eutrophication. Results: In this study, a pot experiment using a subtropical tobacco-growing soil fertilized with four P levels-no P, low P, medium P, and high P-was conducted and rhizosphere and bulk soils were analyzed. Results: P addition significantly increased tobacco biomass production (except under low P input) and total soil P and available P content ( Discussion: Collectively, our results indicate that maintaining sustainable agricultural ecosystems under surplus P conditions requires more attention to be directed toward motivating the potential of soil functional microbes in P cycling, rather than just through continual P input.
Language	English
Publishing date	2024-03-07
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	2613694-6
ISSN	1664-462X
ISSN	1664-462X
DOI	10.3389/fpls.2024.1344733
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Article ; Online: Very important pharmacogenetic variants landscape and potential clinical relevance in the Zhuang population from Yunnan province.

Li, Yujie / Chang, Yanting / Yan, Yan / Ma, Xiaoya / Zhou, Wenqian / Zhang, Huan / Guo, Jinping / Wei, Jie / Jin, Tianbo

Scientific reports

2024 Volume 14, Issue 1, Page(s) 7495

Abstract: The gradual evolution of pharmacogenomics has shed light on the genetic basis for inter-individual drug response variations across diverse populations. This study aimed to identify pharmacogenomic variants that differ in Zhuang population compared with ... ...

Abstract	The gradual evolution of pharmacogenomics has shed light on the genetic basis for inter-individual drug response variations across diverse populations. This study aimed to identify pharmacogenomic variants that differ in Zhuang population compared with other populations and investigate their potential clinical relevance in gene-drug and genotypic-phenotypic associations. A total of 48 variants from 24 genes were genotyped in 200 Zhuang subjects using the Agena MassARRAY platform. The allele frequencies and genotype distribution data of 26 populations were obtained from the 1000 Genomes Project, followed by a comparison and statistical analysis. After Bonferroni correction, significant differences in genotype frequencies were observed of CYP3A5 (rs776746), ACE (rs4291), KCNH2 (rs1805123), and CYP2D6 (rs1065852) between the Zhuang population and the other 26 populations. It was also found that the Chinese Dai in Xishuangbanna, China, Han Chinese in Beijing, China, and Southern Han Chinese, China showed least deviation from the Zhuang population. The Esan in Nigeria, Gambian in Western Division, The Gambia, and Yoruba in Ibadan, Nigeria exhibited the largest differences. This was also proved by structural analysis, Fst analysis and phylogenetic tree. Furthermore, these differential variants may be associated with the pharmacological efficacy and toxicity of Captopril, Amlodipine, Lisinopril, metoclopramide, and alpha-hydroxymetoprolol in the Zhuang population. Our study has filled the gap of pharmacogenomic information in the Zhuang population and has provided a theoretical framework for the secure administration of drugs in the Zhuang population.
MeSH term(s)	Humans ; Pharmacogenomic Variants ; Phylogeny ; Clinical Relevance ; Polymorphism, Single Nucleotide ; China ; Nigeria ; Gene Frequency ; Genotype
Language	English
Publishing date	2024-03-29
Publishing country	England
Document type	Journal Article
ZDB-ID	2615211-3
ISSN	2045-2322 ; 2045-2322
ISSN (online)	2045-2322
ISSN	2045-2322
DOI	10.1038/s41598-024-58092-w
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Article ; Online: The landscape of very important pharmacogenes variants and potential clinical relevance in the Chinese Jingpo population: a comparative study with worldwide populations.

Ma, Xiaoya / Li, Yujie / Zang, Xufeng / Guo, Jinping / Zhou, Wenqian / Han, Junhui / Liang, Jing / Wan, Panpan / Yang, Hua / Jin, Tianbo

Cancer chemotherapy and pharmacology

2024 Volume 93, Issue 5, Page(s) 481–496

Abstract: Background: Pharmacogenomics is a facet of personalized medicine that explores how genetic variants affect drug metabolism and adverse drug reactions. Therefore, this study aims to detect distinct pharmacogenomic variations among the Jingpo population ... ...

Abstract	Background: Pharmacogenomics is a facet of personalized medicine that explores how genetic variants affect drug metabolism and adverse drug reactions. Therefore, this study aims to detect distinct pharmacogenomic variations among the Jingpo population and explore their clinical correlation with drug metabolism and toxicity. Methods: Agena MassARRAY Assay was used to genotype 57 VIP variants in 28 genes from 159 unrelated Jingpo participants. Subsequently, the chi-squared test and Bonferroni's statistical tests were utilized to conduct a comparative analysis of genotypes and allele frequencies between the Jingpo population and the other 26 populations from the 1000 Genome Project. Results: We discovered that the KHV (Kinh in Ho ChiMinh City, Vietnam), CHS (Southern Han Chi-nese, China) and JPT (Japanese in Tokyo, Japan) exhibited the smallest differences from the Jingpo with only 4 variants, while ESN (Esan in Nigeria) exhibited the largest differences with 30 variants. Besides, a total of six considerably different loci (rs4291 in ACE, rs20417 in PTGS2, rs1801280 and rs1799929 in NAT2, rs2115819 in ALOX5, rs1065852 in CYP2D6, p < 3.37 × 10 Conclusion: Our study unveils distinct pharmacogenomic variants in the Jingpo population and discovers their association with the metabolic efficiency of NSAIDs, montelukast, and tamoxifen.
MeSH term(s)	Adult ; Female ; Humans ; Male ; Middle Aged ; Acetates ; China ; Clinical Relevance ; Cyclopropanes ; East Asian People/genetics ; Gene Frequency ; Genotype ; Pharmacogenetics ; Pharmacogenomic Variants ; Polymorphism, Single Nucleotide ; Quinolines ; Sulfides
Chemical Substances	Acetates ; Cyclopropanes ; montelukast (MHM278SD3E) ; Quinolines ; Sulfides
Language	English
Publishing date	2024-02-01
Publishing country	Germany
Document type	Journal Article ; Research Support, Non-U.S. Gov't ; Comparative Study
ZDB-ID	6820-2
ISSN	1432-0843 ; 0344-5704 ; 0943-9404
ISSN (online)	1432-0843
ISSN	0344-5704 ; 0943-9404
DOI	10.1007/s00280-023-04638-0
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