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  1. Article ; Online: Strongly Base-Two Groups.

    Burness, Timothy C / Guralnick, Robert M

    Vietnam journal of mathematics

    2023  Volume 51, Issue 3, Page(s) 657–683

    Abstract: ... ...

    Abstract Let
    Language English
    Publishing date 2023-05-10
    Publishing country Singapore
    Document type Journal Article
    ZDB-ID 1481450-X
    ISSN 2305-2228 ; 2305-221X
    ISSN (online) 2305-2228
    ISSN 2305-221X
    DOI 10.1007/s10013-023-00628-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Rising minimum temperatures contribute to 50 years of occupancy decline among cold-adapted Arctic and boreal butterflies in North America.

    Shirey, Vaughn / Neupane, Naresh / Guralnick, Robert / Ries, Leslie

    Global change biology

    2024  Volume 30, Issue 2, Page(s) e17205

    Abstract: Global climate change has been identified as a potential driver of observed insect declines, yet in many regions, there are critical data gaps that make it difficult to assess how communities are responding to climate change. Poleward regions are of ... ...

    Abstract Global climate change has been identified as a potential driver of observed insect declines, yet in many regions, there are critical data gaps that make it difficult to assess how communities are responding to climate change. Poleward regions are of particular interest because warming is most rapid while biodiversity data are most sparse. Building on recent advances in occupancy modeling of presence-only data, we reconstructed 50 years (1970-2019) of butterfly occupancy trends in response to rising minimum temperatures in one of the most under-sampled regions of North America. Among 90 modeled species, we found that cold-adapted species are far more often in decline compared with their warm-adapted, more southernly distributed counterparts. Furthermore, in a post hoc analysis using species' traits, we find that species' range-wide average annual temperature is the only consistent predictor of occupancy changes. Species with warmer ranges were most likely to be increasing in occupancy. This trend results in the majority of butterflies increasing in occupancy probability over the last 50 years. Our results provide the first look at macroscale butterfly biodiversity shifts in high-latitude North America. These results highlight the potential of leveraging the wealth of presence-only data, the most abundant source of biodiversity data, for inferring changes in species distributions.
    MeSH term(s) Animals ; Butterflies/physiology ; Temperature ; Biodiversity ; Climate Change ; Arctic Regions ; Ecosystem
    Language English
    Publishing date 2024-02-25
    Publishing country England
    Document type Journal Article
    ZDB-ID 1281439-8
    ISSN 1365-2486 ; 1354-1013
    ISSN (online) 1365-2486
    ISSN 1354-1013
    DOI 10.1111/gcb.17205
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: FloraTraiter: Automated parsing of traits from descriptive biodiversity literature.

    Folk, Ryan A / Guralnick, Robert P / LaFrance, Raphael T

    Applications in plant sciences

    2024  Volume 12, Issue 1, Page(s) e11563

    Abstract: Premise: Plant trait data are essential for quantifying biodiversity and function across Earth, but these data are challenging to acquire for large studies. Diverse strategies are needed, including the liberation of heritage data locked within ... ...

    Abstract Premise: Plant trait data are essential for quantifying biodiversity and function across Earth, but these data are challenging to acquire for large studies. Diverse strategies are needed, including the liberation of heritage data locked within specialist literature such as floras and taxonomic monographs. Here we report FloraTraiter, a novel approach using rule-based natural language processing (NLP) to parse computable trait data from biodiversity literature.
    Methods: FloraTraiter was implemented through collaborative work between programmers and botanical experts and customized for both online floras and scanned literature. We report a strategy spanning optical character recognition, recognition of taxa, iterative building of traits, and establishing linkages among all of these, as well as curational tools and code for turning these results into standard morphological matrices.
    Results: Over 95% of treatment content was successfully parsed for traits with <1% error. Data for more than 700 taxa are reported, including a demonstration of common downstream uses.
    Conclusions: We identify strategies, applications, tips, and challenges that we hope will facilitate future similar efforts to produce large open-source trait data sets for broad community reuse. Largely automated tools like FloraTraiter will be an important addition to the toolkit for assembling trait data at scale.
    Language English
    Publishing date 2024-01-18
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2699923-7
    ISSN 2168-0450
    ISSN 2168-0450
    DOI 10.1002/aps3.11563
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Substantial urbanization-driven declines of larval and adult moths in a subtropical environment.

    Belitz, Michael W / Sawyer, Asia / Hendrick, Lillian K / Kawahara, Akito Y / Guralnick, Robert P

    Global change biology

    2024  Volume 30, Issue 3, Page(s) e17241

    Abstract: Recent work has shown the decline of insect abundance, diversity and biomass, with potential implications for ecosystem services. These declines are especially pronounced in regions with high human activity, and urbanization is emerging as a significant ... ...

    Abstract Recent work has shown the decline of insect abundance, diversity and biomass, with potential implications for ecosystem services. These declines are especially pronounced in regions with high human activity, and urbanization is emerging as a significant contributing factor. However, the scale of these declines and the traits that determine variation in species-specific responses remain less well understood, especially in subtropical and tropical regions, where insect diversity is high and urban footprints are rapidly expanding. Here, we surveyed moths across an entire year in protected forested sites across an urbanization gradient to test how caterpillar and adult life stages of subtropical moths (Lepidoptera) are impacted by urbanization. Specifically, we assess how urban development affects the total biomass of caterpillars, abundance of adult moths and quantify how richness and phylogenetic diversity of macro-moths are impacted by urban development. Additionally, we explore how life-history traits condition species' responses to urban development. At the community level, we find that urban development decreases caterpillar biomass and adult moth abundance. We also find sharp declines of adult macro-moths in response to urban development across the phylogeny, leading to a decrease in species richness and phylogenetic diversity in more urban sites. Finally, our study found that smaller macro-moths are less impacted by urban development than larger macro-moths in subtropical environments, perhaps highlighting the tradeoffs of metabolic costs of urban heat favoring smaller moths over the relative benefits of dispersal for larger moths. In summary, our research underscores the far-reaching consequences of urbanization on moths and provides compelling evidence that urban forests alone may not be sufficient to safeguard biodiversity in cities.
    MeSH term(s) Animals ; Humans ; Ecosystem ; Urbanization ; Moths ; Larva ; Phylogeny ; Biodiversity ; Insecta
    Language English
    Publishing date 2024-03-25
    Publishing country England
    Document type Journal Article
    ZDB-ID 1281439-8
    ISSN 1365-2486 ; 1354-1013
    ISSN (online) 1365-2486
    ISSN 1354-1013
    DOI 10.1111/gcb.17241
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Quantifying error in occurrence data: Comparing the data quality of iNaturalist and digitized herbarium specimen data in flowering plant families of the southeastern United States.

    White, Elizabeth / Soltis, Pamela S / Soltis, Douglas E / Guralnick, Robert

    PloS one

    2023  Volume 18, Issue 12, Page(s) e0295298

    Abstract: iNaturalist has the potential to be an extremely rich source of organismal occurrence data. Launched in 2008, it now contains over 150 million uploaded observations as of May 2023. Based on the findings of a limited number of past studies assessing the ... ...

    Abstract iNaturalist has the potential to be an extremely rich source of organismal occurrence data. Launched in 2008, it now contains over 150 million uploaded observations as of May 2023. Based on the findings of a limited number of past studies assessing the taxonomic accuracy of participatory science-driven sources of occurrence data such as iNaturalist, there has been concern that some portion of these records might be misidentified in certain taxonomic groups. In this case study, we compare Research Grade iNaturalist observations with digitized herbarium specimens, both of which are currently available for combined download from large data aggregators and are therefore the primary sources of occurrence data for large-scale biodiversity/biogeography studies. Our comparisons were confined regionally to the southeastern United States (Florida, Georgia, North Carolina, South Carolina, Texas, Tennessee, Kentucky, and Virginia). Occurrence records from ten plant families (Gentianaceae, Ericaceae, Melanthiaceae, Ulmaceae, Fabaceae, Asteraceae, Fagaceae, Cyperaceae, Juglandaceae, Apocynaceae) were downloaded and scored on taxonomic accuracy. We found a comparable and relatively low rate of misidentification among both digitized herbarium specimens and Research Grade iNaturalist observations within the study area. This finding illustrates the utility and high quality of iNaturalist data for future research in the region, but also points to key differences between data types, giving each a respective advantage, depending on applications of the data.
    MeSH term(s) Magnoliopsida ; Data Accuracy ; North Carolina ; South Carolina ; Virginia
    Language English
    Publishing date 2023-12-07
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0295298
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Challenges and opportunities for using natural history collections to estimate insect population trends.

    Davis, Courtney L / Guralnick, Robert P / Zipkin, Elise F

    The Journal of animal ecology

    2022  Volume 92, Issue 2, Page(s) 237–249

    Abstract: Natural history collections (NHC) provide a wealth of information that can be used to understand the impacts of global change on biodiversity. As such, there is growing interest in using NHC data to estimate changes in species' distributions and ... ...

    Abstract Natural history collections (NHC) provide a wealth of information that can be used to understand the impacts of global change on biodiversity. As such, there is growing interest in using NHC data to estimate changes in species' distributions and abundance trends over historic time horizons when contemporary survey data are limited or unavailable. However, museum specimens were not collected with the purpose of estimating population trends and thus can exhibit spatiotemporal and collector-specific biases that can impose severe limitations to using NHC data for evaluating population trajectories. Here we review the challenges associated with using museum records to track long-term insect population trends, including spatiotemporal biases in sampling effort and sparse temporal coverage within and across years. We highlight recent methodological advancements that aim to overcome these challenges and discuss emerging research opportunities. Specifically, we examine the potential of integrating museum records and other contemporary data sources (e.g. collected via structured, designed surveys and opportunistic citizen science programs) in a unified analytical framework that accounts for the sampling biases associated with each data source. The emerging field of integrated modelling provides a promising framework for leveraging the wealth of collections data to accurately estimate long-term trends of insect populations and identify cases where that is not possible using existing data sources.
    MeSH term(s) Animals ; Insecta ; Biodiversity ; Population Dynamics
    Language English
    Publishing date 2022-06-27
    Publishing country England
    Document type Journal Article ; Review ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 3024-7
    ISSN 1365-2656 ; 0021-8790
    ISSN (online) 1365-2656
    ISSN 0021-8790
    DOI 10.1111/1365-2656.13763
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Global geographical and latitudinal variation in butterfly species richness captured through a comprehensive country‐level occurrence database

    Pinkert, Stefan / Barve, Vijay / Guralnick, Robert / Jetz, Walter

    Global ecology and biogeography. 2022 May, v. 31, no. 5

    2022  

    Abstract: MOTIVATION: Insects provide vital ecological functions and account for over half of all described species. An at least basic understanding of their geographical distributions is key for addressing a range of central ecological and evolutionary questions ... ...

    Abstract MOTIVATION: Insects provide vital ecological functions and account for over half of all described species. An at least basic understanding of their geographical distributions is key for addressing a range of central ecological and evolutionary questions and to inform conservation. However, even for popular groups, such as butterflies, the knowledge of species’ distributions at global scale remains highly incomplete. To address this information gap, we present a data product of comprehensive country‐level occurrences for the 19,327 accepted species of extant butterflies. This compilation is based on a quality‐controlled combination of 165 literature sources and publicly available occurrence records from Global Biodiversity Information Facility (GBIF), harmonized to a global master taxonomy, and constitutes 159,659 (87,506 unique) species–country combinations. We developed a protocol for the integration of country‐level information from literature into the process of cleaning/validating species point occurrence records that facilitates dynamic updates of these country‐level checklist data. Such occurrence records are available for less than 54% of the species, with an apparent bias towards temperate regions and taxa. We use this combined database for a global assessment of the geographical variation in the diversity of butterflies, including an analysis of latitudinal gradients in the species richness—the first undertaken at this higher resolution. Country‐level richness decreases from the equator to the poles, both with and without control for country sizes. The presented data and analyses highlight the potential of leveraging multiple types of distribution information, particularly for taxa with limited data and their incorporation in ecological and conservation analysis. Our database and associated workflows provide a basis for an improved biogeographical understanding and conservation of insect biodiversity. MAIN TYPES OF VARIABLES CONTAINED: Country‐level occurrences and their sources. SPATIAL LOCATION AND GRAIN: Global, 256 countries. TIME PERIOD AND GRAIN: 1861 to 2021. MAJOR TAXA AND LEVEL OF MEASUREMENT: 19,191 accepted species of extant butterflies. SOFTWARE FORMAT: .csv, .shp.
    Keywords biogeography ; butterflies ; computer software ; databases ; geographical distribution ; geographical variation ; protocols ; species richness ; taxonomy
    Language English
    Dates of publication 2022-05
    Size p. 830-839.
    Publishing place John Wiley & Sons, Ltd
    Document type Article
    Note JOURNAL ARTICLE
    ZDB-ID 2021283-5
    ISSN 1466-8238 ; 1466-822X ; 0960-7447
    ISSN (online) 1466-8238
    ISSN 1466-822X ; 0960-7447
    DOI 10.1111/geb.13475
    Database NAL-Catalogue (AGRICOLA)

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  8. Article ; Online: Traits as Essential Biodiversity Variables

    Guralnick, Robert

    Biodiversity Information Science and Standards. 2017 Aug. 14, v. 1 p.e20295-

    2017  

    Abstract: Essential Biodiversity Variables (EBVs) are harmonized biodiversity variables and their asssociated measurements needed for developing indicators of global biodiversity change. EBVs can serve the important purpose of aligning biodiversity monitoring ... ...

    Abstract Essential Biodiversity Variables (EBVs) are harmonized biodiversity variables and their asssociated measurements needed for developing indicators of global biodiversity change. EBVs can serve the important purpose of aligning biodiversity monitoring efforts, much as Essential Climatic Variables (ECVs) help align allied efforts in climate science. One of six initially proposed EBV classes is devoted to species’ traits, since traits form the crucial link between the evolutionary history of organisms, their assembly into communities, and the nature and dynamic functioning of ecosystems. Despite their importance, prevalence, and scientific promise, the biodiversity community is still developing the conceptual, informatics, technical, and legal frameworks required for the large scale implementation and uptake. As part of an international consortium called GLOBIS-B, and in coordination with the The Group on Earth Observations Biodiversity Observation Network (GEO BON; geobon.org), we report on recent efforts to synthesize current efforts in trait data collection and trait datasets, computational workflows, ways to standardize data and metadata, and assessments of the openness and accessibility of existing species trait datasets. Members of the GLOBIS-B (www.globis-b.eu/) consortium also produced a set of candidate EBVs within the broader trait class ('Phenology', 'Organism morphology', 'Reproduction', 'Physiology' and 'Movement'). In this presentation, we begin by introducing the concept of EBVs, the current working definition of traits in the context of the EBV process, and workflows that have been developed for other EBV classes ('Species Populations') and the importance of standardizing EBV classes and the trait class, in particular. Building on this introduction, we discuss how the EBV concept is operationalized, focusing on workflows for trait integration, and the importance of data and metadata standards,following work from Kissling et al. 2017 (http://onlinelibrary.wiley.com/doi/10.1111/brv.12359/full). On the legal front, we suggest that the Creative Commons (CC) framework provides effective tools for designating legally interoperable and open data, especially when trait data are in the public domain (CC0, CC PDM) or assigned with a CC BY license, and metadata citation and other forms of attribution are available in both human and machine-readable form. We also suggest how EBVs can inform policy at national and global scales. Moving forward, renewed efforts of repeated trait data collection as well as standardised protocols for data and metadata collection are needed to improve the empirical basis of species traits EBVs. Moreover, open data as well as computational workflows are required for comprehensively assessing progress towards conservation policy targets and sustainable development goals. We conclude with a call to action for the TDWG community to consider their role in further developing, implementing, and scaling biodiversity monitoring under the EBV framework.
    Keywords biodiversity ; climate ; data collection ; humans ; issues and policy ; metadata ; sustainable development ; traits ; standards ; Essential Biodiversity Variables ; interoperability ; harmonized biodiversity data
    Language English
    Dates of publication 2017-0814
    Publishing place Pensoft Publishers
    Document type Article ; Online
    ISSN 2535-0897
    DOI 10.3897/tdwgproceedings.1.20295
    Database NAL-Catalogue (AGRICOLA)

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  9. Article ; Online: Challenges and opportunities for using natural history collections to estimate insect population trends

    Davis, Courtney L. / Guralnick, Robert P. / Zipkin, Elise F.

    Journal of Animal Ecology. 2023 Feb., v. 92, no. 2 p.237-249

    2023  

    Abstract: Natural history collections (NHC) provide a wealth of information that can be used to understand the impacts of global change on biodiversity. As such, there is growing interest in using NHC data to estimate changes in species' distributions and ... ...

    Abstract Natural history collections (NHC) provide a wealth of information that can be used to understand the impacts of global change on biodiversity. As such, there is growing interest in using NHC data to estimate changes in species' distributions and abundance trends over historic time horizons when contemporary survey data are limited or unavailable. However, museum specimens were not collected with the purpose of estimating population trends and thus can exhibit spatiotemporal and collector‐specific biases that can impose severe limitations to using NHC data for evaluating population trajectories. Here we review the challenges associated with using museum records to track long‐term insect population trends, including spatiotemporal biases in sampling effort and sparse temporal coverage within and across years. We highlight recent methodological advancements that aim to overcome these challenges and discuss emerging research opportunities. Specifically, we examine the potential of integrating museum records and other contemporary data sources (e.g. collected via structured, designed surveys and opportunistic citizen science programs) in a unified analytical framework that accounts for the sampling biases associated with each data source. The emerging field of integrated modelling provides a promising framework for leveraging the wealth of collections data to accurately estimate long‐term trends of insect populations and identify cases where that is not possible using existing data sources.
    Keywords animal ecology ; biodiversity ; citizen science ; global change ; insects ; museums ; natural history ; surveys
    Language English
    Dates of publication 2023-02
    Size p. 237-249.
    Publishing place John Wiley & Sons, Ltd
    Document type Article ; Online
    Note REVIEW
    ZDB-ID 3024-7
    ISSN 1365-2656 ; 0021-8790
    ISSN (online) 1365-2656
    ISSN 0021-8790
    DOI 10.1111/1365-2656.13763
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  10. Article ; Online: Phenological research based on natural history collections: Practical guidelines and a lepidopteran case study

    Belitz, Michael W. / Larsen, Elise A. / Shirey, Vaughn / Li, Daijiang / Guralnick, Robert P.

    Functional Ecology. 2023 Feb., v. 37, no. 2 p.234-247

    2023  

    Abstract: Natural history collections (NHCs) have been indispensable to understanding longer‐term trends of the timing of seasonal events. Massive‐scale digitization of specimens promises to further enable phenological research, especially the ability to move ... ...

    Abstract Natural history collections (NHCs) have been indispensable to understanding longer‐term trends of the timing of seasonal events. Massive‐scale digitization of specimens promises to further enable phenological research, especially the ability to move towards a deeper understanding of drivers of change and how trait–environment interactions shape phenological sensitivity. Despite the promise of NHCs to answer fundamental phenology questions, the use of these data resources presents unique and often overlooked challenges requiring specialized workflow steps, such as assembling multisource data, accounting for date imprecision and making decisions about trade‐offs between data density and spatial resolution. We provide a set of key best practice recommendations and showcase these via a case study that utilizes NHC data to test hypotheses about spatiotemporal trends in adult Lepidoptera (i.e. butterflies and moths) flight timing across North America. Our case study is a worked example of these best practices, helping practitioners recognize and overcome potential pitfalls at each step, from data acquisition and cleaning, to delineating spatial units and proper estimation of phenological metrics and associated uncertainty, to building appropriate models. We confirm and extend the critical importance of voltinism and diapause strategy, but less‐so daily activity patterns, for predicting Lepidoptera phenology spatiotemporal trends. Our case study also showcases the unique power of NHC data to test existing hypotheses and generate new insights about temporal phenological trends. Specifically, migratory species and species that enter diapause as adults are advancing the start of flight periods in more recent years, even after accounting for climate context. These results highlight the physiological and adaptive differences between species with different overwintering strategies. We close by noting the value of partnerships between data scientists, museum experts and ecological modellers to fully harness the power of digital data resources to address pressing global change challenges. These partnerships can extend approaches for integrating multiple data types to fully unlock our understanding of the tempo, mode, drivers and outcomes of phenological changes at greater spatial, temporal and taxonomic scales. Read the free Plain Language Summary for this article on the Journal blog.
    Keywords Lepidoptera ; adults ; case studies ; climate ; data collection ; diapause ; digital database ; flight ; global change ; migratory species ; museums ; natural history ; overwintering ; phenology ; uncertainty ; voltinism ; North America
    Language English
    Dates of publication 2023-02
    Size p. 234-247.
    Publishing place John Wiley & Sons, Ltd
    Document type Article ; Online
    Note JOURNAL ARTICLE
    ZDB-ID 2020307-X
    ISSN 1365-2435 ; 0269-8463
    ISSN (online) 1365-2435
    ISSN 0269-8463
    DOI 10.1111/1365-2435.14173
    Database NAL-Catalogue (AGRICOLA)

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