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  1. Article ; Online: Ediacaran cap carbonates with microbial build-ups capping barite-bearing methane seep networks in the Kaarta Mountains, Taoudeni Basin, Mali

    Álvaro, J. Javier / Billström, Kjell / Hallmann, Christian / Hoshino, Yosuke / Jorge Acosta, Alberto

    Sedimentary Geology. 2023 Aug. 06, p.106481-

    2023  , Page(s) 106481–

    Abstract: Defining the variability and distribution of methane seeps and microbial activity in the aftermath of the Marinoan glaciation is a long-standing challenge in the field of Snowball models. Early diagenetic barite is commonly linked to tepee structures and ...

    Abstract Defining the variability and distribution of methane seeps and microbial activity in the aftermath of the Marinoan glaciation is a long-standing challenge in the field of Snowball models. Early diagenetic barite is commonly linked to tepee structures and associated breccias lacking microbial textures and fabrics, giving the impression that chemosynthetic microbes, or at least methane-tolerant microbes, did not participate in the carbonate production of their cap carbonate host. This apparent paradox has been an outstanding question in the lowermost Ediacaran cap carbonates of the Taoudeni Basin, NW Africa. In the Kaarta Mountains of Mali these carbonates exhibit, over short distances (< 10 km), sharp facies-related environmental modifications with quiescent-dominated seafloor conditions, episodically interrupted by metre-scale disrupted substrates. The latter comprise fissure and fracture networks, occluded with tabular-and rosette-shaped barite cements, and sealed by decimetre-scale stromatolitic build-ups exhibiting intergrowths with barite needles. The strongly ¹³C-depleted carbon isotope values of the microbial carbonates (δ¹³C as low as −43.2 ‰ PDB) suggest the influence of methane, also preserved as fluid inclusions in barite crystals (documented with RAMAN spectroscopy) derived from a gas reservoir below the cap carbonate. Tₕ of other fluid inclusions (Linkam microthermometry), ranging from 174 °C to 222 °C, provides minimum entrapment temperatures for barite precipitation. The microbially induced oxidation of methane and input of Ba-rich fluids was coupled to reduction of sulphate derived from seawater. The Sr/S isotope ratio and barite shape and size point to diagenetic barite crystals. The biomarkers yielded by the cap carbonate reflect a C₂₉-dominant steroidal signature characteristic of stigmastanoid algal blooms. Although present-day microbial build-ups related to methane sources commonly occur in deep substrates and under anoxic bottom waters, the cap carbonate of the Kaarta Mountains is representative of shallower substrates, whereas its biomarkers point to deposition under episodic non-oxidizing conditions.
    Keywords Ediacaran period ; Raman spectroscopy ; algae ; barite ; basins ; biomarkers ; carbon ; carbonates ; glaciation ; isotopes ; methane ; microbial activity ; oxidation ; seawater ; sulfates ; Mali ; Stromatolite ; Isotope geochemistry ; Stigmastanoid biomarker ; Marinoan ; Taoudeni Basin
    Language English
    Dates of publication 2023-0806
    Publishing place Elsevier B.V.
    Document type Article ; Online
    Note Pre-press version
    ZDB-ID 216739-6
    ISSN 0037-0738
    ISSN 0037-0738
    DOI 10.1016/j.sedgeo.2023.106481
    Database NAL-Catalogue (AGRICOLA)

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  2. Article: Comparability and reproducibility of biomarker ratio values measured by GC-QQQ-MS

    French, Katherine L / Leider, Arne / Hallmann, Christian

    Organic geochemistry. 2020 Dec., v. 150

    2020  

    Abstract: The Norwegian Geochemical Standard North Sea Oil-1 was analyzed by gas chromatography triple quadrupole mass spectrometry (GC-QQQ-MS) on two instruments using independently developed analytical methods. Biomarker ratios determined by GC-QQQ-MS were ... ...

    Abstract The Norwegian Geochemical Standard North Sea Oil-1 was analyzed by gas chromatography triple quadrupole mass spectrometry (GC-QQQ-MS) on two instruments using independently developed analytical methods. Biomarker ratios determined by GC-QQQ-MS were compared to each other and to previously reported values determined by gas chromatography single quadrupole mass spectrometry (GC-Q-MS) or flame ionization detection (GC-FID). Hopane, sterane, and tricyclic ratio values determined by GC-QQQ-MS in multiple reaction monitoring (MRM) mode are comparable to each other, but their comparability to reported values measured by GC-Q-MS in selected ion monitoring (SIM) mode depends in part on whether the compounds in the ratio have similar or dissimilar mass spectral responses. For example, sterane and hopane stereoisomer thermal maturity ratios measured by GC-QQQ-MS in MRM mode agree with previously reported GC-Q-MS SIM values, but an offset is observed for ratios of rearranged hopanes or steranes to their non-rearranged counterparts. Triaromatic steroid, monoaromatic steroid, phenanthrene, and methylphenanthrene ratios measured by GC-QQQ-MS are comparable to each other and to reported GC-Q-MS SIM values. The carbon preference index is comparable across GC-QQQ-MS measurements and reported GC-FID values, while comparability is more variable for other ratios based on pristane, phytane, and/or n-alkanes. Comparability of variably acquired biomarker data could be enhanced in the future by developing instrument- and ratio-specific correction factors or by modifying GC-QQQ-MS parameters and MRM transitions to more closely reproduce previously reported values.
    Keywords alkanes ; biomarkers ; carbon ; flame ionization ; geochemistry ; mass spectrometry ; phenanthrenes ; stereoisomers ; North Sea
    Language English
    Dates of publication 2020-12
    Publishing place Elsevier Ltd
    Document type Article
    Note NAL-AP-2-clean
    ISSN 0146-6380
    DOI 10.1016/j.orggeochem.2020.104124
    Database NAL-Catalogue (AGRICOLA)

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  3. Book ; Online ; Thesis: Unravelling the impacts of palaeoecology, palaeoenvironment and lithofacies on sedimentary organic NSO compounds

    Yue, Huiwen [Verfasser] / Horsfield, Brian [Akademischer Betreuer] / Horsfield, Brian [Gutachter] / Hallmann, Christian [Gutachter]

    2023  

    Author's details Huiwen Yue ; Gutachter: Brian Horsfield, Christian Hallmann ; Betreuer: Brian Horsfield
    Keywords Geowissenschaften ; Earth Sciences
    Subject code sg550
    Language English
    Publisher Technische Universität Berlin
    Publishing place Berlin
    Document type Book ; Online ; Thesis
    Database Digital theses on the web

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  4. Book ; Online ; Thesis: Petroleum geochemistry of cretaceous carbonate reservoirs – case studies from the northern Western Desert of Egypt and the Lower Shuaiba Formation in Central Oman

    Monged, Mostafa Nasr Sayed [Verfasser] / Dominik, Wilhelm [Akademischer Betreuer] / Schulz, Hans-Martin [Akademischer Betreuer] / Dominik, Wilhelm [Gutachter] / Hallmann, Christian [Gutachter] / Schulz, Hans-Martin [Gutachter]

    2024  

    Author's details Mostafa Nasr Sayed Monged ; Gutachter: Wilhelm Dominik, Christian Hallmann, Hans-Martin Schulz ; Wilhelm Dominik, Hans-Martin Schulz
    Keywords Geowissenschaften ; Earth Sciences
    Subject code sg550
    Language English
    Publisher Technische Universität Berlin
    Publishing place Berlin
    Document type Book ; Online ; Thesis
    Database Digital theses on the web

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  5. Article: Metabolic Responses of a Phototrophic Co-Culture Enriched from a Freshwater Sediment on Changing Substrate Availability and its Relevance for Biogeochemical Iron Cycling

    Schmidt, Caroline / Nikeleit, Verena / Schaedler, Franziska / Leider, Arne / Lueder, Ulf / Bryce, Casey / Hallmann, Christian / Kappler, Andreas

    Geomicrobiology journal. 2021 Mar. 1, v. 38, no. 3

    2021  

    Abstract: Metabolic flexibility controls microbial survival and shapes ecological structures. Although the utilization of a variety of substrates has been studied for individual metabolically versatile microorganisms, only little is known about the response of ... ...

    Abstract Metabolic flexibility controls microbial survival and shapes ecological structures. Although the utilization of a variety of substrates has been studied for individual metabolically versatile microorganisms, only little is known about the response of microbial communities toward substrate fluctuation. Here, we exposed a phototrophic co-culture (Rhodopseudomonas sp. and Chlorobium sp.) that was isolated from a littoral freshwater sediment to a variety of substrates (acetate, Fe(II), or H₂) and followed the abundance of individual microbial partners based on their characteristic light absorption pattern. Chlorobium sp. dominated the culture when Fe(II) was supplied, whereas Rhodopseudomonas sp. decreased below detection. Rhodopseudomonas sp. dominated when the co-culture was transferred onto acetate (Chlorobium sp. below detection). When grown on H₂, the dominance pattern depended on pre-culture conditions. Pre-cultures on Fe(II) or acetate resulted in dominance of Chlorobium sp. or Rhodopseudomonas sp., respectively. Although the relative abundance of the two partner strains strictly relies on substrate availability, we were incapable of isolating Chlorobium sp. from the co-culture. Our study shows how substrate fluctuations shape microbial distribution and points toward potential community interactions that enable microbial survival.
    Keywords Chlorobium ; Rhodopseudomonas ; absorption ; acetates ; coculture ; freshwater ; littoral zone ; pathogen survival ; sediments
    Language English
    Dates of publication 2021-0301
    Size p. 267-281.
    Publishing place Taylor & Francis
    Document type Article
    Note NAL-AP-2-clean
    ZDB-ID 1482560-0
    ISSN 1521-0529 ; 0149-0451
    ISSN (online) 1521-0529
    ISSN 0149-0451
    DOI 10.1080/01490451.2020.1837303
    Database NAL-Catalogue (AGRICOLA)

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  6. Article ; Online: Genetics re-establish the utility of 2-methylhopanes as cyanobacterial biomarkers before 750 million years ago.

    Hoshino, Yosuke / Nettersheim, Benjamin J / Gold, David A / Hallmann, Christian / Vinnichenko, Galina / van Maldegem, Lennart M / Bishop, Caleb / Brocks, Jochen J / Gaucher, Eric A

    Nature ecology & evolution

    2023  Volume 7, Issue 12, Page(s) 2045–2054

    Abstract: Fossilized lipids offer a rare glimpse into ancient ecosystems. 2-Methylhopanes in sedimentary rocks were once used to infer the importance of cyanobacteria as primary producers throughout geological history. However, the discovery of hopanoid C-2 ... ...

    Abstract Fossilized lipids offer a rare glimpse into ancient ecosystems. 2-Methylhopanes in sedimentary rocks were once used to infer the importance of cyanobacteria as primary producers throughout geological history. However, the discovery of hopanoid C-2 methyltransferase (HpnP) in Alphaproteobacteria led to the downfall of this molecular proxy. In the present study, we re-examined the distribution of HpnP in a new phylogenetic framework including recently proposed candidate phyla and re-interpreted a revised geological record of 2-methylhopanes based on contamination-free samples. We show that HpnP was probably present in the last common ancestor of cyanobacteria, while the gene appeared in Alphaproteobacteria only around 750 million years ago (Ma). A subsequent rise of sedimentary 2-methylhopanes around 600 Ma probably reflects the expansion of Alphaproteobacteria that coincided with the rise of eukaryotic algae-possibly connected by algal dependency on microbially produced vitamin B
    MeSH term(s) Phylogeny ; Ecosystem ; Cyanobacteria/genetics ; Plants ; Biomarkers
    Chemical Substances 2-methylhopane ; Biomarkers
    Language English
    Publishing date 2023-10-26
    Publishing country England
    Document type Journal Article
    ISSN 2397-334X
    ISSN (online) 2397-334X
    DOI 10.1038/s41559-023-02223-5
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Algal origin of sponge sterane biomarkers negates the oldest evidence for animals in the rock record.

    Bobrovskiy, Ilya / Hope, Janet M / Nettersheim, Benjamin J / Volkman, John K / Hallmann, Christian / Brocks, Jochen J

    Nature ecology & evolution

    2020  Volume 5, Issue 2, Page(s) 165–168

    Abstract: The earliest fossils of animal-like organisms occur in Ediacaran rocks that are approximately 571 million years old. Yet 24-isopropylcholestanes and other ... ...

    Abstract The earliest fossils of animal-like organisms occur in Ediacaran rocks that are approximately 571 million years old. Yet 24-isopropylcholestanes and other C
    MeSH term(s) Animals ; Biomarkers ; Eukaryota ; Fossils ; Sterols
    Chemical Substances Biomarkers ; Sterols
    Language English
    Publishing date 2020-11-23
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 2397-334X
    ISSN (online) 2397-334X
    DOI 10.1038/s41559-020-01334-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Lost world of complex life and the late rise of the eukaryotic crown.

    Brocks, Jochen J / Nettersheim, Benjamin J / Adam, Pierre / Schaeffer, Philippe / Jarrett, Amber J M / Güneli, Nur / Liyanage, Tharika / van Maldegem, Lennart M / Hallmann, Christian / Hope, Janet M

    Nature

    2023  Volume 618, Issue 7966, Page(s) 767–773

    Abstract: Eukaryotic life appears to have flourished surprisingly late in the history of our planet. This view is based on the low diversity of diagnostic eukaryotic fossils in marine sediments of mid-Proterozoic age (around 1,600 to 800 million years ago) and an ... ...

    Abstract Eukaryotic life appears to have flourished surprisingly late in the history of our planet. This view is based on the low diversity of diagnostic eukaryotic fossils in marine sediments of mid-Proterozoic age (around 1,600 to 800 million years ago) and an absence of steranes, the molecular fossils of eukaryotic membrane sterols
    MeSH term(s) Bacteria/chemistry ; Bacteria/metabolism ; Biological Evolution ; Eukaryota/chemistry ; Eukaryota/classification ; Eukaryota/metabolism ; Eukaryotic Cells/chemistry ; Eukaryotic Cells/classification ; Eukaryotic Cells/metabolism ; Fossils ; Sterols/analysis ; Sterols/biosynthesis ; Sterols/isolation & purification ; Sterols/metabolism ; Geologic Sediments/chemistry ; Biosynthetic Pathways ; Aquatic Organisms/chemistry ; Aquatic Organisms/classification ; Aquatic Organisms/metabolism ; Biota ; Phylogeny ; History, Ancient
    Chemical Substances Sterols
    Language English
    Publishing date 2023-06-07
    Publishing country England
    Document type Journal Article
    ZDB-ID 120714-3
    ISSN 1476-4687 ; 0028-0836
    ISSN (online) 1476-4687
    ISSN 0028-0836
    DOI 10.1038/s41586-023-06170-w
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Book ; Online ; Thesis: Hydrocarbons and NSO-compounds in oil-bearing fluid inclusions detected by FT-ICR-MS and their applications in petroleum systems

    Han, Yufu [Verfasser] / Dominik, Wilhelm [Akademischer Betreuer] / Horsfield, Brian [Akademischer Betreuer] / Noah, Mareike [Akademischer Betreuer] / Mangelsdorf, Kai [Akademischer Betreuer] / Hallmann, Christian [Gutachter] / Dominik, Wilhelm [Gutachter]

    2022  

    Author's details Yufu Han ; Gutachter: Christian Hallmann, Wilhelm Dominik ; Wilhelm Dominik, Brian Horsfield, Mareike Noah, Kai Mangelsdorf
    Keywords Geowissenschaften ; Earth Sciences
    Subject code sg550
    Language English
    Publisher Technische Universität Berlin
    Publishing place Berlin
    Document type Book ; Online ; Thesis
    Database Digital theses on the web

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  10. Article ; Online: Geological alteration of Precambrian steroids mimics early animal signatures.

    van Maldegem, Lennart M / Nettersheim, Benjamin J / Leider, Arne / Brocks, Jochen J / Adam, Pierre / Schaeffer, Philippe / Hallmann, Christian

    Nature ecology & evolution

    2020  Volume 5, Issue 2, Page(s) 169–173

    Abstract: The absence of unambiguous animal body fossils in rocks older than the late Ediacaran has rendered fossil lipids the most promising tracers of early organismic complexity. Yet much debate surrounds the various potential biological sources of putative ... ...

    Abstract The absence of unambiguous animal body fossils in rocks older than the late Ediacaran has rendered fossil lipids the most promising tracers of early organismic complexity. Yet much debate surrounds the various potential biological sources of putative metazoan steroids found in Precambrian rocks. Here we show that 26-methylated steranes-hydrocarbon structures currently attributed to the earliest animals-can form via geological alteration of common algal sterols, which carries important implications for palaeo-ecological interpretations and inhibits the use of such unconventional 'sponge' steranes for reconstructing early animal evolution.
    MeSH term(s) Animals ; Biological Evolution ; Fossils ; Steroids
    Chemical Substances Steroids
    Language English
    Publishing date 2020-11-23
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 2397-334X
    ISSN (online) 2397-334X
    DOI 10.1038/s41559-020-01336-5
    Database MEDical Literature Analysis and Retrieval System OnLINE

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