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  1. Article ; Online: MLReal

    Tariq Alkhalifah / Hanchen Wang / Oleg Ovcharenko

    Artificial Intelligence in Geosciences, Vol 3, Iss , Pp 101-

    Bridging the gap between training on synthetic data and real data applications in machine learning

    2022  Volume 114

    Abstract: Among the biggest challenges we face in utilizing neural networks trained on waveform (i.e., seismic, electromagnetic, or ultrasound) data is its application to real data. The requirement for accurate labels often forces us to train our networks using ... ...

    Abstract Among the biggest challenges we face in utilizing neural networks trained on waveform (i.e., seismic, electromagnetic, or ultrasound) data is its application to real data. The requirement for accurate labels often forces us to train our networks using synthetic data, where labels are readily available. However, synthetic data often fail to capture the reality of the field/real experiment, and we end up with poor performance of the trained neural networks (NNs) at the inference stage. This is because synthetic data lack many of the realistic features embedded in real data, including an accurate waveform source signature, realistic noise, and accurate reflectivity. In other words, the real data set is far from being a sample from the distribution of the synthetic training set. Thus, we describe a novel approach to enhance our supervised neural network (NN) training on synthetic data with real data features (domain adaptation). Specifically, for tasks in which the absolute values of the vertical axis (time or depth) of the input section are not crucial to the prediction, like classification, or can be corrected after the prediction, like velocity model building using a well, we suggest a series of linear operations on the input to the network data so that the training and application data have similar distributions. This is accomplished by applying two operations on the input data to the NN, whether the input is from the synthetic or real data subset domain: (1) The crosscorrelation of the input data section (i.e., shot gather, seismic image, etc.) with a fixed-location reference trace from the input data section. (2) The convolution of the resulting data with the mean (or a random sample) of the autocorrelated sections from the other subset domain. In the training stage, the input data are from the synthetic subset domain and the auto-corrected (we crosscorrelate each trace with itself) sections are from the real subset domain, and the random selection of sections from the real data is implemented at every epoch ...
    Keywords Neural networks ; Induced seismicity ; Image processing ; Computational seismology ; Waveform inversion ; Geography (General) ; G1-922 ; Information technology ; T58.5-58.64
    Subject code 006
    Language English
    Publishing date 2022-12-01T00:00:00Z
    Publisher KeAi Communications Co. Ltd.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article ; Online: One-Pot Green Preparation of Fluorescent Cellulose Nanofibers

    Qilin Lu / Jiayin Wu / Hanchen Wang / Biao Huang

    Polymers, Vol 14, Iss 1313, p

    2022  Volume 1313

    Abstract: Fluorescent cellulose nanofibers (FCNFs), with a high yield, were prepared via one-pot hydrolysis and the grafting reaction of cellulose with thiazolipyridine carboxylic acid (TPCA). The hydrolysis and Fischer esterification of cellulose were conducted ... ...

    Abstract Fluorescent cellulose nanofibers (FCNFs), with a high yield, were prepared via one-pot hydrolysis and the grafting reaction of cellulose with thiazolipyridine carboxylic acid (TPCA). The hydrolysis and Fischer esterification of cellulose were conducted under microwave-hydrothermal conditions; meanwhile, TPCA formation was induced by the dehydration reaction between L-cysteine and citric acid. The effects of the reaction temperature and reaction time on the yield and performance of FCNF were investigated. The morphology and size, surface chemical property, crystal structure, thermostability, and fluorescent performance of FCNF were characterized. The results revealed that the yield of FCNF reached 73.2% under a microwave power of 500 W, reaction temperature of 110 °C, and reaction time of 5 h. The FCNF obtained presents a short rod-like morphology. The crystallinity of the FCNFs is 80%, and their thermal stability did not decline significantly. Additionally, the fluorescent performance of the FCNFs is excellent, which results in them having good sensitivity to chloride ions. The good fluorescent performance and significant responsiveness to chloride ions of FCNFs lead to them having broad prospects in bio-labeling, biosensing, information storage, chloride ion detection, among others.
    Keywords fluorescent cellulose nanofibers ; high yield ; one-pot ; green preparation ; chloride ion detection ; Organic chemistry ; QD241-441
    Subject code 540
    Language English
    Publishing date 2022-03-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: Passivator-Free Microwave–Hydrothermal Synthesis of High Quantum Yield Carbon Dots for All-Carbon Fluorescent Nanocomposite Films

    Jiayin Wu / Qilin Lu / Hanchen Wang / Biao Huang

    Nanomaterials, Vol 12, Iss 15, p

    2022  Volume 2624

    Abstract: Based on the self-passivation function of chitosan, an efficient, and green synthesis strategy was applied to prepare chitosan carbon dots (CDs). The quantum yield of carbon dots reached 35% under the conditions of hydrothermal temperature of 200 °C, ... ...

    Abstract Based on the self-passivation function of chitosan, an efficient, and green synthesis strategy was applied to prepare chitosan carbon dots (CDs). The quantum yield of carbon dots reached 35% under the conditions of hydrothermal temperature of 200 °C, hydrothermal time of 5 h, and chitosan concentration of 2%. Moreover, the obtained carbon dots had high selectivity and sensitivity to Fe 3+ . Based on the Schiff base reaction between the aldehyde groups of dialdehyde cellulose nanofibrils (DNF) and the amino groups of CDs, a chemically cross-linked, novel, fluorescent composite film, with high transparency and high strength, was created using one-pot processing. Knowing that the fluorescence effect of the composite film on Fe 3+ had a linear relationship in the concentration range of 0–100 μM, a fluorescent probe can be developed for quantitative analysis and detection of Fe 3+ . Owing to their excellent fluorescent and mechanical properties, the fluorescent nanocomposite films have potential applications in the fields of Fe 3+ detection, fluorescent labeling, and biosensing.
    Keywords chitosan ; carbon dots ; fluorescent composite film ; nanocellulose ; iron ion detection ; Chemistry ; QD1-999
    Subject code 333
    Language English
    Publishing date 2022-07-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article ; Online: One-Pot Synthesis of UPy-Functionalized Nanocellulose under Mechanochemical Synergy for High-Performance Epoxy Nanocomposites

    Hanchen Wang / Jiayin Wu / Biao Huang / Qi-Lin Lu

    Polymers, Vol 14, Iss 2428, p

    2022  Volume 2428

    Abstract: The high strength, high specific surface area, excellent biocompatibility, and degradability of nanocellulose (NCC) make it a potential reinforcing phase for composite materials. However, the polyhydroxyl property of NCC renders it prone to self- ... ...

    Abstract The high strength, high specific surface area, excellent biocompatibility, and degradability of nanocellulose (NCC) make it a potential reinforcing phase for composite materials. However, the polyhydroxyl property of NCC renders it prone to self-aggregation and it has weak interfacial compatibility with non-polar substrates, limiting its enhancement performance for composite materials. Therefore, based on the high reactivity of NCC, the chemical modification of NCC to introduce functional groups is the basis for effectively reducing its self-aggregation, improving its interfacial compatibility with the polymer matrix, and creating nanocellulose-based functional materials. The existing functional modifications of NCC have limitations; they require cumbersome steps, generate low yields, and are environmentally unfriendly. Herein, ureido-pyrimidinone (UPy) was introduced to NCC through a sustainable and high-efficiency avenue formed by the mechanochemical synergy of microwaves and ultrasonication. The obtained UPy-modified nanocellulose (NCC-UPy) exhibited a rod-like shape, with a length of 200–300 nm and a width of 20–30 nm, which presented oriented and stable dispersion in an aqueous medium, and the zeta potential reached −40 mV. Moreover, NCC-UPy had good thermostability (>350 °C) and high crystallinity (82.5%) within the crystal type of cellulose I. Using the as-prepared NCC-UPy as a molecular bridge, it was organically combined with epoxy resin through multiple hydrogen bonds to construct a nanocomposite membrane with superior mechanical strength and thermal stability. The results revealed that NCC-UPy dispersed uniformly in the epoxy matrix without aggregating and that the interfacial compatibility was good, leading to an 87% increase in the tensile strength of the formed nanocomposite membrane when 0.5 wt.% NCC-UPy was loaded. It was proved that NCC-UPy had remarkable reinforcing potential and effective stress transfer capacity for composites. Consequently, this study may open the door to the development ...
    Keywords UPy-functionalized nanocellulose ; one-pot method ; mechanochemical synergy ; molecular bridge ; epoxy nanocomposites ; Organic chemistry ; QD241-441
    Subject code 540
    Language English
    Publishing date 2022-06-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article ; Online: Spatial-temporal pattern of ecosystem service supply-demand and coordination in the Ulansuhai Basin, China

    Hanchen Wang / Lina Wang / Xiao Fu / Qianhui Yang / Gang Wu / Mingjie Guo / Shiqi Zhang / Di Wu / Yu Zhu / Hongbing Deng

    Ecological Indicators, Vol 143, Iss , Pp 109406- (2022)

    2022  

    Abstract: Accurately quantifying the spatiotemporal patterns in ecosystem service (ES)11 ES-Ecosystem service. supply and demand and their coupling coordination dynamics, as well as identifying the spatial heterogeneity of the influencing factors for coupling ... ...

    Abstract Accurately quantifying the spatiotemporal patterns in ecosystem service (ES)11 ES-Ecosystem service. supply and demand and their coupling coordination dynamics, as well as identifying the spatial heterogeneity of the influencing factors for coupling coordination degree are necessary for regional sustainable development. This study used the Ulansuhai Basin in Inner Mongolia Province of China as a case to quantify the supply, demand, and supply-demand ratio of ES (meat production, grain production, carbon storage, water yield, nitrogen purification, and phosphorus purification) from 2000 to 2020. The synthesized coefficient of ES supply (ESCI)22 ESCI-Synthesized coefficient of ES supply. and demand (ESDI),33 ESDI-Synthesized coefficient of ES demand. the match degree of total supply and demand (MD),44 MD-Match degree of total ES supply and demand. and the coupling coordination degree (CD)55 CD-Coupling coordination degree between total ES supply and demand. were taken as indices to explore the relationship between the ESCI and ESDI and the coordination relationships. A mixed effects model was used to determine the spatial heterogeneity response of CD to different influencing factors. The results showed that the total ES supply in the Ulansuhai Basin always met the demand. The area with the highest ESCI was always observed in the Urad Front Banner, while Linhe district had the highest ESDI. Although incoordination improved from mild to superior from 2000 to 2020 at the basin scale, significant spatial variations were observed at the county scale. In addition, the variation in CD was significantly correlated with population, followed by precipitation, and cropland area. The findings comprehensively explore the match and coordination between ES supply and demand, and the spatial heterogeneity of the effects of the influencing factors on CD. Our study can contribute to the formulation of future policies for regional ecological restoration and sustainable development.
    Keywords Ecosystem services ; Supply-demand ratio ; Coupling coordination ; Mixed effects model ; Ecology ; QH540-549.5
    Subject code 690
    Language English
    Publishing date 2022-10-01T00:00:00Z
    Publisher Elsevier
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: The Sapria himalayana genome provides new insights into the lifestyle of endoparasitic plants

    Xuelian Guo / Xiaodi Hu / Jianwu Li / Bingyi Shao / Yajun Wang / Long Wang / Kui Li / Dongliang Lin / Hanchen Wang / Zhiyuan Gao / Yuannian Jiao / Yingying Wen / Hongyu Ji / Chongbo Ma / Song Ge / Wenkai Jiang / Xiaohua Jin

    BMC Biology, Vol 21, Iss 1, Pp 1-

    2023  Volume 22

    Abstract: Abstract Background Sapria himalayana (Rafflesiaceae) is an endoparasitic plant characterized by a greatly reduced vegetative body and giant flowers; however, the mechanisms underlying its special lifestyle and greatly altered plant form remain unknown. ... ...

    Abstract Abstract Background Sapria himalayana (Rafflesiaceae) is an endoparasitic plant characterized by a greatly reduced vegetative body and giant flowers; however, the mechanisms underlying its special lifestyle and greatly altered plant form remain unknown. To illustrate the evolution and adaptation of S. himalayasna, we report its de novo assembled genome and key insights into the molecular basis of its floral development, flowering time, fatty acid biosynthesis, and defense responses. Results The genome of S. himalayana is ~ 1.92 Gb with 13,670 protein-coding genes, indicating remarkable gene loss (~ 54%), especially genes involved in photosynthesis, plant body, nutrients, and defense response. Genes specifying floral organ identity and controlling organ size were identified in S. himalayana and Rafflesia cantleyi, and showed analogous spatiotemporal expression patterns in both plant species. Although the plastid genome had been lost, plastids likely biosynthesize essential fatty acids and amino acids (aromatic amino acids and lysine). A set of credible and functional horizontal gene transfer (HGT) events (involving genes and mRNAs) were identified in the nuclear and mitochondrial genomes of S. himalayana, most of which were under purifying selection. Convergent HGTs in Cuscuta, Orobanchaceae, and S. himalayana were mainly expressed at the parasite–host interface. Together, these results suggest that HGTs act as a bridge between the parasite and host, assisting the parasite in acquiring nutrients from the host. Conclusions Our results provide new insights into the flower development process and endoparasitic lifestyle of Rafflesiaceae plants. The amount of gene loss in S. himalayana is consistent with the degree of reduction in its body plan. HGT events are common among endoparasites and play an important role in their lifestyle adaptation.
    Keywords Sapria himalayana ; Endophyte ; Genome ; Horizontal gene transfer ; Flower development ; fatty acid biosynthesis ; Biology (General) ; QH301-705.5
    Subject code 580 ; 572
    Language English
    Publishing date 2023-06-01T00:00:00Z
    Publisher BMC
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Article: A Bayesian Model Averaging approach for modelling tree mortality in relation to site, competition and climatic factors for Chinese fir plantations

    Lu, Lele / Hanchen Wang / Sophan Chhin / Aiguo Duan / Jianguo Zhang / Xiongqing Zhang

    Forest ecology and management. 2019 May 15, v. 440

    2019  

    Abstract: Relationships between tree mortality and endogenous factors and climate factors have emerged as important concerns, and logistic stepwise regression is widely used for modeling the relationships. However, this method subsequently ignores both the ... ...

    Abstract Relationships between tree mortality and endogenous factors and climate factors have emerged as important concerns, and logistic stepwise regression is widely used for modeling the relationships. However, this method subsequently ignores both the variables not selected because of insignificance, and the model uncertainty due to the variable selection process. Bayesian Model Averaging (BMA) selects all possible models and uses the posterior probabilities of these models to perform all inferences and predictions. In this study, Bayesian Model Averaging (BMA) and logistic stepwise regression were used to analyze tree mortality in relation to competition, site index, and climatic factors in Chinese fir (Cunninghamia lanceolata (Lamb.) plantations established at five initial planting densities (A: 1667, B: 3333, C: 5000, D: 6667, and E: 10,000 trees/ha). Results showed that the posterior probability of the best model acquired by stepwise regression was less than that of the best model (highest posterior probability) acquired by BMA for pooling the data and density level D. Especially in the other planting densities, the model selected by stepwise regression was not in the BMA models. It indicates that the BMA method performed better than logistic stepwise regression, because BMA gave accurate posterior probability by taking into account the uncertainty of the model. In addition, the mortality increased with high competition and decreased with increasing temperature. The research has important implications for managing Chinese fir plantations under climate change.
    Keywords Bayesian theory ; Cunninghamia lanceolata ; climate change ; climatic factors ; model uncertainty ; models ; mortality ; plant density ; plantations ; prediction ; site index ; temperature ; tree mortality ; trees
    Language English
    Dates of publication 2019-0515
    Size p. 169-177.
    Publishing place Elsevier B.V.
    Document type Article
    ZDB-ID 751138-3
    ISSN 0378-1127
    ISSN 0378-1127
    DOI 10.1016/j.foreco.2019.03.003
    Database NAL-Catalogue (AGRICOLA)

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  8. Article ; Online: Focalizing regions of biomarker relevance facilitates biomarker prediction on histopathological images

    Jiefeng Gan / Hanchen Wang / Hui Yu / Zitong He / Wenjuan Zhang / Ke Ma / Lianghui Zhu / Yutong Bai / Zongwei Zhou / Alan Yullie / Xiang Bai / Mingwei Wang / Dehua Yang / Yanyan Chen / Guoan Chen / Joan Lasenby / Chao Cheng / Jia Wu / Jianjun Zhang /
    Xinggang Wang / Yaobing Chen / Guoping Wang / Tian Xia

    iScience, Vol 26, Iss 10, Pp 107243- (2023)

    2023  

    Abstract: Summary: Image-based AI has thrived as a potentially revolutionary tool for predicting molecular biomarker statuses, which aids in categorizing patients for appropriate medical treatments. However, many methods using hematoxylin and eosin-stained (H&E) ... ...

    Abstract Summary: Image-based AI has thrived as a potentially revolutionary tool for predicting molecular biomarker statuses, which aids in categorizing patients for appropriate medical treatments. However, many methods using hematoxylin and eosin-stained (H&E) whole-slide images (WSIs) have been found to be inefficient because of the presence of numerous uninformative or irrelevant image patches. In this study, we introduced the region of biomarker relevance (ROB) concept to identify the morphological areas most closely associated with biomarkers for accurate status prediction. We actualized this concept within a framework called saliency ROB search (SRS) to enable efficient and effective predictions. By evaluating various lung adenocarcinoma (LUAD) biomarkers, we showcased the superior performance of SRS compared to current state-of-the-art AI approaches. These findings suggest that AI tools, built on the ROB concept, can achieve enhanced molecular biomarker prediction accuracy from pathological images.
    Keywords Histology ; Pathology ; Cancer ; Machine learning ; Science ; Q
    Subject code 006
    Language English
    Publishing date 2023-10-01T00:00:00Z
    Publisher Elsevier
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article: Genome-wide identification of GLABRA3 downstream genes for anthocyanin biosynthesis and trichome formation in Arabidopsis

    Gao, Chenhao / Changyu Jin / Dong Li / Hanchen Wang / Haoli Ma / Jiangbo Hai / Kaige Liu / Mingxun Chen / Shaowei Duan / Shuanghui Qi

    Biochemical and biophysical research communications. 2017 Apr. 01, v. 485

    2017  

    Abstract: GLABRA3 (GL3), a bHLH transcription factor, has previously proved to be involved in anthocyanin biosynthesis and trichome formation in Arabidopsis, however, its downstream targeted genes are still largely unknown. Here, we found that GL3 was widely ... ...

    Abstract GLABRA3 (GL3), a bHLH transcription factor, has previously proved to be involved in anthocyanin biosynthesis and trichome formation in Arabidopsis, however, its downstream targeted genes are still largely unknown. Here, we found that GL3 was widely present in Arabidopsis vegetative and reproductive organs. New downstream targeted genes of GL3 for anthocyanin biosynthesis and trichome formation were identified in young shoots and expanding true leaves by RNA sequencing. GL3-mediated gene expression was tissue specific in the two biological processes. This study provides new clues to further understand the GL3-mediated regulatory network of anthocyanin biosynthesis and trichome formation in Arabidopsis.
    Keywords anthocyanins ; Arabidopsis ; biosynthesis ; gene expression ; genes ; leaves ; sequence analysis ; shoots ; transcription factors ; trichomes
    Language English
    Dates of publication 2017-0401
    Size p. 360-365.
    Publishing place Elsevier Inc.
    Document type Article
    ZDB-ID 205723-2
    ISSN 0006-291X ; 0006-291X
    ISSN (online) 0006-291X
    ISSN 0006-291X
    DOI 10.1016/j.bbrc.2017.02.074
    Database NAL-Catalogue (AGRICOLA)

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  10. Article ; Online: Record thermopower found in an IrMn-based spintronic stack

    Sa Tu / Timothy Ziman / Guoqiang Yu / Caihua Wan / Junfeng Hu / Hao Wu / Hanchen Wang / Mengchao Liu / Chuanpu Liu / Chenyang Guo / Jianyu Zhang / Marco A. Cabero Z. / Youguang Zhang / Peng Gao / Song Liu / Dapeng Yu / Xiufeng Han / Ingrid Hallsteinsen / Dustin A. Gilbert /
    Peter Wölfle / Kang L. Wang / Jean-Philippe Ansermet / Sadamichi Maekawa / Haiming Yu

    Nature Communications, Vol 11, Iss 1, Pp 1-

    2020  Volume 7

    Abstract: Antiferromagnetic materials are potentially useful for spintronic applications. Here, the authors report high thermoelectric power value of 390 μV/K Seebeck coefficient in IrMn-based half magnetic tunnel junctions at room temperature. ...

    Abstract Antiferromagnetic materials are potentially useful for spintronic applications. Here, the authors report high thermoelectric power value of 390 μV/K Seebeck coefficient in IrMn-based half magnetic tunnel junctions at room temperature.
    Keywords Science ; Q
    Language English
    Publishing date 2020-04-01T00:00:00Z
    Publisher Nature Publishing Group
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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