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  1. Article ; Online: A case report of fatal COVID-19 complicated by rapidly progressive sepsis caused by Klebsiella variicola.

    Tanii, Rimi / Harada, Sohei / Saito, Hiroki / Okamoto, Koh / Doi, Yohei / Suzuki, Masahiro

    BMC infectious diseases

    2023  Volume 23, Issue 1, Page(s) 184

    Abstract: Background: There is a growing interest in Klebsiella variicola as a causative pathogen in humans, though its clinical features and the impact of co-infection or secondary infection with COVID-19 remain unknown.: Case presentation: A 71-year-old man ... ...

    Abstract Background: There is a growing interest in Klebsiella variicola as a causative pathogen in humans, though its clinical features and the impact of co-infection or secondary infection with COVID-19 remain unknown.
    Case presentation: A 71-year-old man presented with fever, altered mental status and generalized weakness and was admitted to ICU due to severe COVID-19 pneumonia. He was newly diagnosed with type II diabetes mellitus upon admission. On hospital day 3, his respiratory status deteriorated, requiring invasive mechanical ventilation. On hospital day 10, superimposed bacterial pneumonia was suspected and subsequently, broad-spectrum antibiotics were administered for the associated bloodstream infection. On hospital day 13, despite administration of active antibiotics and appropriate source control, he decompensated and died. The causative organism isolated from blood cultures was initially reported as K. pneumoniae, but it was identified as K. variicola by a genetic analysis. A representative isolate (FUJ01370) had a novel multilocus sequence typing allelic profile (gapA-infB-mdh-pgi-phoE-rpoB-tonB: 16-24-21-27-52-17-152), to which sequence type 5794 was assigned (GenBank assembly accession: GCA_019042755.1).
    Conclusions: We report a fatal case of respiratory and bloodstream infection due to K. variicola complicating severe COVID-19. Co-infection or secondary infection of K. variicola in COVID-19 is likely under-recognized and can be fulminant as in this case.
    MeSH term(s) Male ; Humans ; Aged ; Coinfection/drug therapy ; Klebsiella Infections/microbiology ; Diabetes Mellitus, Type 2/complications ; Diabetes Mellitus, Type 2/drug therapy ; COVID-19/complications ; Klebsiella/genetics ; Klebsiella pneumoniae/genetics ; Anti-Bacterial Agents/therapeutic use ; Sepsis/drug therapy
    Chemical Substances Anti-Bacterial Agents
    Language English
    Publishing date 2023-03-29
    Publishing country England
    Document type Case Reports ; Journal Article
    ZDB-ID 2041550-3
    ISSN 1471-2334 ; 1471-2334
    ISSN (online) 1471-2334
    ISSN 1471-2334
    DOI 10.1186/s12879-023-08128-9
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Teicoplanin and vancomycin as treatment for glycopeptide-susceptible Enterococcus faecium bacteraemia: a propensity score-adjusted non-inferior comparative study.

    Yamaguchi, Ryo / Yamamoto, Takehito / Okamoto, Koh / Harada, Sohei / Echizenya, Miho / Tsutsumi, Takeya / Takada, Tappei

    The Journal of antimicrobial chemotherapy

    2023  Volume 78, Issue 5, Page(s) 1231–1240

    Abstract: Objectives: Limited evidence is available regarding alternative therapeutic agents to vancomycin in treating glycopeptide-susceptible Enterococcus faecium (GSEF) bacteraemia. This study assessed the effectiveness and safety of teicoplanin compared with ... ...

    Abstract Objectives: Limited evidence is available regarding alternative therapeutic agents to vancomycin in treating glycopeptide-susceptible Enterococcus faecium (GSEF) bacteraemia. This study assessed the effectiveness and safety of teicoplanin compared with vancomycin for treating GSEF bacteraemia.
    Patients and methods: This was a retrospective, non-inferiority cohort study. Patients aged ≥18 years who developed GSEF bacteraemia and received either teicoplanin or vancomycin were included. The primary effectiveness outcome was the clinical success at the end of treatment, with a generalized linear model using the propensity score for selecting the agent as a covariate. We used an absolute difference of 20% in clinical success as the non-inferiority margin. Using multivariable logistic regression, the primary safety outcome was the incidence of acute kidney injury (AKI).
    Results: In total, 164 patients (74 and 90 in the teicoplanin and vancomycin groups, respectively) were included. Overall, 64.9% (48/74) and 48.9% (44/90) of patients in the teicoplanin and vancomycin groups, respectively, achieved the primary effectiveness outcome. A generalized linear analysis showed an adjusted effectiveness difference of 9.9% (95% CI, -0.9% to 20.0%; P = 0.07), indicating non-inferiority of teicoplanin versus vancomycin. The incidence of AKI was 8.1% (6/74) and 24.4% (22/90) in the teicoplanin and vancomycin groups, respectively, with an adjusted OR of 0.242 (95% CI, 0.068 to 0.864; P = 0.029), indicating significantly lower AKI risk in the teicoplanin than in the vancomycin group.
    Conclusions: Teicoplanin is a safe and useful alternative therapeutic agent for treating GSEF bacteraemia.
    MeSH term(s) Humans ; Adolescent ; Adult ; Vancomycin/adverse effects ; Teicoplanin/adverse effects ; Enterococcus faecium ; Glycopeptides/adverse effects ; Anti-Bacterial Agents/adverse effects ; Retrospective Studies ; Cohort Studies ; Propensity Score ; Acute Kidney Injury/drug therapy ; Bacteremia/drug therapy
    Chemical Substances Vancomycin (6Q205EH1VU) ; Teicoplanin (61036-62-2) ; Glycopeptides ; Anti-Bacterial Agents
    Language English
    Publishing date 2023-03-15
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 191709-2
    ISSN 1460-2091 ; 0305-7453
    ISSN (online) 1460-2091
    ISSN 0305-7453
    DOI 10.1093/jac/dkad079
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: [Genetic elements involved in the acquisition of antimicrobial resistance genes in bacteria].

    Harada, Sohei

    Nihon rinsho. Japanese journal of clinical medicine

    2012  Volume 70, Issue 2, Page(s) 329–332

    Abstract: A variety of genetic elements play key role in the dissemination of antimicrobial resistance genes among gram-negative bacteria. Transposons can transfer resistance genes intracellularly, while conjugative plasmids carrying resistance genes can move from ...

    Abstract A variety of genetic elements play key role in the dissemination of antimicrobial resistance genes among gram-negative bacteria. Transposons can transfer resistance genes intracellularly, while conjugative plasmids carrying resistance genes can move from one bacterial cell to another. Integrons are genetic elements that can collect several resistance genes in the form of gene cassettes. These genetic elements sometimes coexist and work cooperatively. For example, integrons, which is not mobile by themselves, can obtain an ability to transfer when they are incorporated into transposons. Recent reports suggest that integrative and conjugative elements, hybrid elements of conjugative plasmids and phages, also contribute to the dissemination of resistance genes among gram-negative bacteria.
    MeSH term(s) DNA Transposable Elements/genetics ; Drug Resistance, Multiple, Bacterial/genetics ; Gram-Negative Bacteria/genetics ; Integrons/genetics ; Plasmids/genetics
    Chemical Substances DNA Transposable Elements
    Language Japanese
    Publishing date 2012-02
    Publishing country Japan
    Document type English Abstract ; Journal Article ; Review
    ZDB-ID 390903-7
    ISSN 0047-1852
    ISSN 0047-1852
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Hypervirulent Klebsiella pneumoniae: a Call for Consensus Definition and International Collaboration.

    Harada, Sohei / Doi, Yohei

    Journal of clinical microbiology

    2018  Volume 56, Issue 9

    Abstract: ... ...

    Abstract Hypervirulent
    MeSH term(s) Bacterial Proteins/genetics ; Drug Resistance, Bacterial/genetics ; Humans ; Klebsiella Infections/microbiology ; Klebsiella pneumoniae/genetics ; Klebsiella pneumoniae/pathogenicity ; Molecular Epidemiology ; Virulence ; Virulence Factors/genetics
    Chemical Substances Bacterial Proteins ; Virulence Factors
    Language English
    Publishing date 2018-08-27
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 390499-4
    ISSN 1098-660X ; 0095-1137
    ISSN (online) 1098-660X
    ISSN 0095-1137
    DOI 10.1128/JCM.00959-18
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Accurate Identification of Klebsiella variicola by MALDI-TOF Mass Spectrometry in Clinical Microbiology Laboratories.

    Ohama, Yuki / Nomura, Yusuke / Mizoguchi, Miyuki / Higurashi, Yoshimi / Okamoto, Koh / Harada, Sohei

    Microbiology spectrum

    2022  Volume 10, Issue 5, Page(s) e0284422

    Abstract: Klebsiella variicola is a pathogen that is increasingly recognized as being associated with human infections, but the methods available to clinical microbiology laboratories for accurate identification are limited. In this study, we assessed the accuracy ...

    Abstract Klebsiella variicola is a pathogen that is increasingly recognized as being associated with human infections, but the methods available to clinical microbiology laboratories for accurate identification are limited. In this study, we assessed the accuracy of identification of
    MeSH term(s) Humans ; Klebsiella Infections/diagnosis ; Klebsiella Infections/microbiology ; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ; Laboratories ; Meropenem ; Ceftriaxone ; Klebsiella/genetics ; Klebsiella pneumoniae/genetics
    Chemical Substances Meropenem (FV9J3JU8B1) ; Ceftriaxone (75J73V1629)
    Language English
    Publishing date 2022-09-20
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2807133-5
    ISSN 2165-0497 ; 2165-0497
    ISSN (online) 2165-0497
    ISSN 2165-0497
    DOI 10.1128/spectrum.02844-22
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Impact of targeted intervention using a collaborative approach for oral third-generation cephalosporins: An interrupted time-series analysis.

    Yamaguchi, Ryo / Okamoto, Koh / Yamamoto, Takehito / Harada, Sohei / Tanaka, Takehiro / Suzuki, Hiroshi / Moriya, Kyoji

    Antimicrobial stewardship & healthcare epidemiology : ASHE

    2022  Volume 2, Issue 1, Page(s) e115

    Abstract: Objectives: To assess the effectiveness of a targeted intervention using a collaborative approach, added to a comprehensive educational intervention, to facilitate the appropriate use of oral third-generation cephalosporins (3GCs).: Design: Quasi- ... ...

    Abstract Objectives: To assess the effectiveness of a targeted intervention using a collaborative approach, added to a comprehensive educational intervention, to facilitate the appropriate use of oral third-generation cephalosporins (3GCs).
    Design: Quasi-experimental study.
    Setting: The University of Tokyo Hospital, a tertiary-care teaching hospital.
    Participants: Approximately 2,000,000 outpatients and 80,000 inpatients at the hospital between April 2017 and March 2020.
    Intervention: The targeted intervention using the collaborative approach was implemented in the departments with the highest use of oral 3GCs (ophthalmology and dermatology departments). Interrupted time-series analysis was applied to assess the change in days of therapy (DOT) of oral 3GCs between the preintervention period (April 2017-April 2019) and the postintervention period (May 2019-March 2020) for both inpatients and outpatients.
    Results: After the introduction of the targeted intervention with oral 3GCs, a significant immediate reduction of 13.48 DOT per 1,000 patient days was detected in inpatients (
    Conclusions: The targeted intervention contributed to a reduction in DOT of oral 3GCs in both inpatients and outpatients. Targeted interventions using a collaborative approach might be helpful in further decreasing the inappropriate use of antibiotics.
    Language English
    Publishing date 2022-07-11
    Publishing country England
    Document type Journal Article
    ISSN 2732-494X
    ISSN (online) 2732-494X
    DOI 10.1017/ash.2022.251
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  7. Article ; Online: First Report of Klebsiella subsp. Ozaenae Meningitis in Japan.

    Hosono Honda, Natsue / Harada, Sohei / Suzuki, Masahiro / Akaiwa, Yasuhisa / Miyashita, Keisuke / Miyamoto, Tomoyuki / Haruki, Kosuke

    Internal medicine (Tokyo, Japan)

    2023  

    Abstract: Although the frequency of community-acquired infections caused by Klebsiella pneumoniae subsp. ozaenae (K. ozaenae) is low, they are often detected in sputum specimens. In addition, lung abscesses, necrotizing pneumonia, and urinary tract infections ... ...

    Abstract Although the frequency of community-acquired infections caused by Klebsiella pneumoniae subsp. ozaenae (K. ozaenae) is low, they are often detected in sputum specimens. In addition, lung abscesses, necrotizing pneumonia, and urinary tract infections caused by K. ozaenae have also been reported. We herein report the first detection of K. ozaenae as an etiological agent of bacterial meningitis in Japan. Cases of K. ozaenae meningitis complicated by diabetes mellitus and sinusitis have been reported elsewhere. When Klebsiella pneumoniae is detected in such cases, it is important to use other detection methods in addition to mass spectrometry for correct identification.
    Language English
    Publishing date 2023-09-15
    Publishing country Japan
    Document type Journal Article
    ZDB-ID 32371-8
    ISSN 1349-7235 ; 0021-5120 ; 0918-2918
    ISSN (online) 1349-7235
    ISSN 0021-5120 ; 0918-2918
    DOI 10.2169/internalmedicine.1894-23
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  8. Article ; Online: Outbreak of

    Hayama, Brian / Harada, Sohei / Suzuki, Masahiro / Doi, Yohei / Nomura, Yusuke / Aoki, Kotaro / Takehana, Kazumi / Akatsuchi, Tomomi / Enokida, Taisuke / Takeda, Koichi / Seto, Akira / Mitani, Hiroki / Ohkushi, Daisuke

    Microbiology spectrum

    2024  Volume 12, Issue 5, Page(s) e0426023

    Abstract: Streptococcus pyogenes: Importance: This study describes an outbreak ... ...

    Abstract Streptococcus pyogenes
    Importance: This study describes an outbreak of
    MeSH term(s) Humans ; Streptococcus pyogenes/genetics ; Streptococcus pyogenes/isolation & purification ; Streptococcus pyogenes/classification ; Streptococcus pyogenes/drug effects ; Disease Outbreaks ; Head and Neck Neoplasms/microbiology ; Head and Neck Neoplasms/surgery ; Streptococcal Infections/microbiology ; Streptococcal Infections/epidemiology ; Male ; Female ; Middle Aged ; Aged ; Cross Infection/epidemiology ; Cross Infection/microbiology ; Retrospective Studies ; Whole Genome Sequencing ; Adult ; Polymorphism, Single Nucleotide ; Surgical Wound Infection/microbiology ; Surgical Wound Infection/epidemiology ; Anti-Bacterial Agents/pharmacology ; Anti-Bacterial Agents/therapeutic use ; Aged, 80 and over ; Health Personnel/statistics & numerical data
    Chemical Substances Anti-Bacterial Agents
    Language English
    Publishing date 2024-04-08
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2807133-5
    ISSN 2165-0497 ; 2165-0497
    ISSN (online) 2165-0497
    ISSN 2165-0497
    DOI 10.1128/spectrum.04260-23
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  9. Article ; Online: Pre-Transplant Seroprevalence, Associated Factors, and Post-Transplant Incidence of Toxoplasma gondii Infection Among Heart Transplant Recipients in Japan.

    Kanno, Yoshiaki / Okamoto, Koh / Shinohara, Takayuki / Kinoshita, Osamu / Hatano, Masaru / Ikeda, Mahoko / Harada, Sohei / Okugawa, Shu / Moriya, Kyoji / Ono, Minoru / Tsutsumi, Takeya

    Transplantation proceedings

    2024  Volume 56, Issue 1, Page(s) 148–152

    Abstract: Background: Among solid organ transplant (SOT) recipients, heart transplant (HT) recipients are at a higher risk of Toxoplasma gondii infection. As Toxoplasma seroprevalence varies by geographic location, updated local epidemiology is essential to guide ...

    Abstract Background: Among solid organ transplant (SOT) recipients, heart transplant (HT) recipients are at a higher risk of Toxoplasma gondii infection. As Toxoplasma seroprevalence varies by geographic location, updated local epidemiology is essential to guide preventive and therapeutic strategies. However, the Toxoplasma seroprevalence and incidence of post-transplant toxoplasmosis among SOT recipients in Japan are unknown.
    Methods: We performed a single-center retrospective observational study at an HT center in Tokyo, Japan. All HT recipients aged ≥18 years between 2006 and April 2019 were included. We reviewed patient charts and conducted a questionnaire survey to investigate the risk factors for infection.
    Results: Among 105 recipients included in the study, 11 (10.5%) were seropositive before transplant. Ninety-five recipients (90.5%), including all pre-transplant seropositive recipients, answered the questionnaire. The recipients who had lived in Okinawa (odds ratio [OR] 7.5 [95% CI 1.42-39.61]; P = .032) and who reported raw-meat eating habits (OR 4.64 [95% CI 1.04-23.3]; P = .021) were more likely to be seropositive. None of the patients developed symptoms of toxoplasmosis. The post-transplant incidence of other major adverse outcomes was not significantly different according to the pre-transplant serostatus.
    Conclusions: About 10% of HT recipients at an HT center in Tokyo were seropositive for Toxoplasma pre-transplant, and none developed symptomatic toxoplasmosis post-transplant on trimethoprim-sulfamethoxazole. The history of raw meat consumption was associated with seropositivity; therefore, avoiding it might be recommended for HT recipient candidates.
    MeSH term(s) Adolescent ; Adult ; Humans ; Heart Transplantation/adverse effects ; Incidence ; Japan/epidemiology ; Risk Factors ; Seroepidemiologic Studies ; Toxoplasma ; Toxoplasmosis/diagnosis ; Toxoplasmosis/epidemiology ; Toxoplasmosis/etiology ; Transplant Recipients ; Retrospective Studies
    Language English
    Publishing date 2024-01-04
    Publishing country United States
    Document type Journal Article ; Observational Study
    ZDB-ID 82046-5
    ISSN 1873-2623 ; 0041-1345
    ISSN (online) 1873-2623
    ISSN 0041-1345
    DOI 10.1016/j.transproceed.2023.11.015
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  10. Article ; Online: Prevalence of High-Level Aminoglycoside Resistance and Genes Encoding Aminoglycoside-Modifying Enzymes in Enterococcus faecalis and Enterococcus faecium Isolated in a University Hospital in Tokyo.

    Harada, Sohei / Shibue, Yasushi / Aoki, Kotaro / Ishii, Yoshikazu / Tateda, Kazuhiro

    Japanese journal of infectious diseases

    2020  Volume 73, Issue 6, Page(s) 476–480

    Abstract: High-level aminoglycoside resistance (HLAR) limits treatment options for invasive enterococcal infections. We examined the prevalence of HLAR, carriage of genes encoding aminoglycoside-modifying enzymes, and production of β-lactamase using the disk ... ...

    Abstract High-level aminoglycoside resistance (HLAR) limits treatment options for invasive enterococcal infections. We examined the prevalence of HLAR, carriage of genes encoding aminoglycoside-modifying enzymes, and production of β-lactamase using the disk diffusion method, polymerase chain reaction, and a nitrocefin-based test, respectively, in Enterococcus faecalis and Enterococcus faecium isolated from patients at a university hospital in Tokyo in 2010. Of the 100 E. faecalis isolates analyzed, 30 isolates had high-level resistance (HLR) to gentamicin, and 22 isolates had HLR to streptomycin. Of the 40 E. faecium isolates analyzed, 9 isolates had HLR to gentamicin, and 9 isolates had HLR to streptomycin. Of the 39 gentamicin-HLR enterococcal isolates, 24 isolates were non-HLR to streptomycin. All 39 isolates with HLR to gentamicin as well as 19 of 101 without HLR carried aac(6')-Ie-aph(2'')-Ia. Carriage of ant(6')-Ia was confirmed in 25 of 31 streptomycin-HLR isolates. Production of β-lactamase was documented in none of the E. faecalis and E. faecium isolates. Whole-genome sequencing analysis revealed that all but one E. faecalis isolate that carried aac(6')-Ie-aph(2'')-Ia and ant(6')-Ia belonged to sequence type (ST) 4 (n = 8), ST16 (n = 4), or ST179 (n = 9). Nevertheless, most of the pairs of isolates had > 10 single-nucleotide polymorphisms even among the isolates of the same ST.
    MeSH term(s) Aminoglycosides/pharmacology ; Anti-Bacterial Agents/pharmacology ; Bacterial Proteins/genetics ; Drug Resistance, Bacterial/genetics ; Enterococcus faecalis/enzymology ; Enterococcus faecalis/genetics ; Enterococcus faecalis/isolation & purification ; Enterococcus faecium/enzymology ; Enterococcus faecium/genetics ; Enterococcus faecium/isolation & purification ; Genes, Bacterial ; Gentamicins/pharmacology ; Gram-Positive Bacterial Infections/microbiology ; Hospitals, University ; Humans ; Microbial Sensitivity Tests/methods ; Polymerase Chain Reaction/methods ; Polymorphism, Single Nucleotide ; Prevalence ; Streptomycin/pharmacology ; Tokyo ; Whole Genome Sequencing/methods ; beta-Lactamases/metabolism
    Chemical Substances Aminoglycosides ; Anti-Bacterial Agents ; Bacterial Proteins ; Gentamicins ; beta-Lactamases (EC 3.5.2.6) ; Streptomycin (Y45QSO73OB)
    Language English
    Publishing date 2020-06-30
    Publishing country Japan
    Document type Journal Article
    ZDB-ID 1478383-6
    ISSN 1884-2836 ; 1344-6304
    ISSN (online) 1884-2836
    ISSN 1344-6304
    DOI 10.7883/yoken.JJID.2019.416
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