Article ; Online: Catalytic properties of the metal ion variants of mandelate racemase reveal alterations in the apparent electrophilicity of the metal cofactor.
Metallomics : integrated biometal science
2019 Volume 11, Issue 3, Page(s) 707–723
Abstract: Mandalate racemase (MR) from Pseudomonas putida requires a divalent metal cation, usually Mg2+, to catalyse the interconversion of the enantiomers of mandelate. Although the active site Mg2+ may be replaced by Mn2+, Co2+, or Ni2+, substitution by these ... ...
| Abstract | Mandalate racemase (MR) from Pseudomonas putida requires a divalent metal cation, usually Mg2+, to catalyse the interconversion of the enantiomers of mandelate. Although the active site Mg2+ may be replaced by Mn2+, Co2+, or Ni2+, substitution by these metal ions does not markedly (<10-fold) alter the kinetic parameters Kappm, kappcat, and (kcat/Km)app for the substrates (R)- and (S)-mandelate, and the alternative substrate (S)-trifluorolactate. Viscosity variation experiments with Mn2+-MR showed that the metal ion plays a role in the uniform binding of the transition states for enzyme-substrate association, the chemical step, and enzyme-product dissociation. Surprisingly, the competitive inhibition constants (Ki) for inhibition of each metalloenzyme variant by benzohydroxamate did not vary significantly with the identity of the metal ion unlike the marked variation of the stability constants (K1) observed for M2+·BzH complex formation in solution. A similar trend was observed for the inhibition of the metalloenzyme variants by F-, except for Mg2+-MR, which bound F- tighter than would be predicted based on the stability constants for formation of M2+·F- complexes in solution. Thus, the enzyme modifies the enatic state of the bound metal ion cofactor so that the apparent electrophilicity of Mg2+ is enhanced, while that of Ni2+ is attenuated, resulting in a levelling effect relative to the trends observed for the free metals in solution. |
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| MeSH term(s) | Bacterial Proteins/chemistry ; Bacterial Proteins/metabolism ; Cations, Divalent/chemistry ; Cations, Divalent/metabolism ; Coenzymes/chemistry ; Coenzymes/metabolism ; Fluorides/chemistry ; Fluorides/metabolism ; Hydroxamic Acids/chemistry ; Hydroxamic Acids/metabolism ; Magnesium/chemistry ; Magnesium/metabolism ; Models, Molecular ; Nickel/chemistry ; Nickel/metabolism ; Protein Binding ; Pseudomonas putida/enzymology ; Racemases and Epimerases/chemistry ; Racemases and Epimerases/metabolism ; Thermodynamics |
| Chemical Substances | Bacterial Proteins ; Cations, Divalent ; Coenzymes ; Hydroxamic Acids ; Nickel (7OV03QG267) ; Racemases and Epimerases (EC 5.1.-) ; mandelate racemase (EC 5.1.2.2) ; Magnesium (I38ZP9992A) ; benzohydroxamic acid (K8YW73872D) ; Fluorides (Q80VPU408O) |
| Language | English |
| Publishing date | 2019-03-06 |
| Publishing country | England |
| Document type | Journal Article ; Research Support, Non-U.S. Gov't |
| ZDB-ID | 2474317-3 |
| ISSN | 1756-591X ; 1756-5901 |
| ISSN (online) | 1756-591X |
| ISSN | 1756-5901 |
| DOI | 10.1039/c8mt00330k |
| Database | MEDical Literature Analysis and Retrieval System OnLINE |
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