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  1. AU="Herbert H. Lindner"
  2. AU="Pei-Ying Hsieh"
  3. AU="Savchenko, Sergey S"
  4. AU="Kothe, Ullrich"
  5. AU="Bhosale, Santosh D"
  6. AU="Santamarina-Albertos, Alba"
  7. AU="Scott M. Riester"
  8. AU="A Zappa, Marco"
  9. AU=Panciani Pier Paolo
  10. AU="La Cascio, L"
  11. AU="Getsuwan, Songpon"

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  1. Artikel ; Online: Corona Isolation Method Matters

    Klaus Faserl / Andrew J. Chetwynd / Iseult Lynch / James A. Thorn / Herbert H. Lindner

    Nanomaterials, Vol 9, Iss 6, p

    Capillary Electrophoresis Mass Spectrometry Based Comparison of Protein Corona Compositions Following On-Particle versus In-Solution or In-Gel Digestion

    2019  Band 898

    Abstract: Increased understanding of the role of the nanomaterial protein corona in driving nanomaterial uptake into, and impacts on, cells and organisms, and the consequent need for characterization of the corona, has led to a flourishing of methods for isolation ...

    Abstract Increased understanding of the role of the nanomaterial protein corona in driving nanomaterial uptake into, and impacts on, cells and organisms, and the consequent need for characterization of the corona, has led to a flourishing of methods for isolation and analysis of the constituent proteins over the past decade. However, despite over 700 corona studies to date, very little is understood in terms of which methods provide the most precise and comprehensive characterization of the corona. With the increasing importance of the modeling of corona formation and its correlation with biological impacts, it is timely to properly characterize and validate the isolation approaches used to determine the protein corona. The current work introduces Capillary Electrophoresis with Electro Spray Ionization Mass Spectrometry (CESI-MS) as a novel method for protein corona characterizations and develops an on-particle tryptic digestion method, comparing peptide solubilization solutions and characterizing the recovery of proteins from the nanomaterial surface. The CESI-MS was compared to the gold standard nano-LC-MS for corona analysis and maintained a high degree of reproducibility, while increasing throughput by >3-fold. The on-particle digestion is compared to an in-solution digestion and an in-gel digestion of the protein corona. Interestingly, a range of different protein classes were found to be recovered to greater or lesser extents among the different methods. Apolipoproteins were detected at lower concentrations when a surfactant was used to solubilize peptides, whereas immunoglobulins in general have a high affinity for nanomaterials, and thus show lower recovery using on-particle digestion. The optimized on-particle digestion was validated using 6 nanomaterials and proved capable of recovering in excess of 97% of the protein corona. These are important factors to consider when designing corona studies and modeling corona formation and impacts, highlighting the significance of a comprehensive validation of ...
    Schlagwörter CE-MS ; mass-spectrometry ; nanoparticles ; proteomics ; protein corona ; reproducibility ; capillary electrophoresis ; Chemistry ; QD1-999
    Thema/Rubrik (Code) 500
    Sprache Englisch
    Erscheinungsdatum 2019-06-01T00:00:00Z
    Verlag MDPI AG
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  2. Artikel: Investigating capillary electrophoresis‐mass spectrometry for the analysis of common post‐translational modifications

    Faserl, Klaus / Bettina Sarg / Herbert H. Lindner / Peter Gruber

    Electrophoresis. 2018 May, v. 39, no. 9-10

    2018  

    Abstract: Capillary electrophoresis coupled to mass spectrometry is a very efficient analytical method for the analysis of post‐translational modifications because of its high separation efficiency and high detection sensitivity. Here we applied CE‐MS using three ... ...

    Abstract Capillary electrophoresis coupled to mass spectrometry is a very efficient analytical method for the analysis of post‐translational modifications because of its high separation efficiency and high detection sensitivity. Here we applied CE‐MS using three differently coated separation capillaries for in‐depth analysis of a set of 70 synthetic post‐translationally modified peptides (including phosphorylation, acetylation, methylation, and nitration). We evaluated the results in terms of peptide detection and separation characteristics and found that the use of a neutrally coated capillary resulted in highest overall signal intensity of singly modified peptides. In contrast, the use of a bare‐fused silica capillary was superior in the identification of multi‐phosphorylated peptides (12 out of 15 were identified). Fast separations of approximately 12 min could be achieved using a positively coated capillary, however, at the cost of separation efficiency. A comparison to nanoLC‐MS revealed that multi‐phosphorylated peptides interact with the RP material very poorly so that these peptides were either washed out or elute as very broad peaks from the nano column which results in a reduced peptide identification rate (7 out of 15). Moreover, the methods applied were found to be very well suited for the analysis of the acetylated, nitrated and methylated peptides. All 36 synthetic peptides, which exhibit one of those modifications, could be identified regardless of the method applied. As a final step in this study and as a proof of principle, the phosphoproteome enriched from PC‐12 pheochromocytoma cells was analyzed by CE‐MS resulting in 5686 identified and 4088 quantified phosphopeptides. We compared the characterized analytes to those identified by a nanoLC‐MS proteomics study and found that less than one third of the phosphopeptides were identical, which demonstrates the benefit by combining different approaches quite impressively.
    Schlagwörter acetylation ; capillary electrophoresis ; detection limit ; mass spectrometry ; methylation ; phosphopeptides ; phosphoproteome ; phosphorylation ; post-translational modification ; proteomics ; silica ; synthetic peptides
    Sprache Englisch
    Erscheinungsverlauf 2018-05
    Umfang p. 1208-1215.
    Erscheinungsort John Wiley & Sons, Ltd
    Dokumenttyp Artikel
    Anmerkung JOURNAL ARTICLE
    ZDB-ID 619001-7
    ISSN 1522-2683 ; 0173-0835
    ISSN (online) 1522-2683
    ISSN 0173-0835
    DOI 10.1002/elps.201700437
    Datenquelle NAL Katalog (AGRICOLA)

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  3. Artikel: Exploiting charge differences for the analysis of challenging post-translational modifications by capillary electrophoresis-mass spectrometry

    Faserl, Klaus / Bettina Sarg / Herbert H. Lindner / Verena Maurer

    Journal of chromatography. 2017,

    2017  

    Abstract: Reversed-phase high-performance liquid chromatography (RP-HPLC) in combination with mass spectrometry (MS) is typically employed for mapping modifications in proteins and peptides. Here we applied a low-flow capillary electrophoresis (CE) −electrospray ...

    Abstract Reversed-phase high-performance liquid chromatography (RP-HPLC) in combination with mass spectrometry (MS) is typically employed for mapping modifications in proteins and peptides. Here we applied a low-flow capillary electrophoresis (CE) −electrospray ionization interface coupled to Orbitrap mass spectrometers to analyze challenging modifications such as asparagine deamidation, aspartate isomerization, arginine citrullination, and phosphopeptide isomers. We achieved excellent resolution of asparagine (Asn), aspartic acid (Asp) and isoaspartic acid (iso-Asp) containing peptides using a synthetic peptide mixture. The migration order in CE enabled a clear assignment of in vitro deamidation/isomerization sites in a protein standard mixture of intermediate complexity (48 proteins) as well as the determination of the in vivo deamidation rate of histone H1.0 directly in a crude nuclear protein fraction. Besides these well-known modifications citrullination, a post-translational modification which changes the positively charged guanidinium group of arginine to the uncharged ureido group of citrulline, was investigated. Applying CE-MS for fast and sensitive analyses of various post-translational modifications of intact and enzymatically digested histone H4, we were able to detect a variety of citrullinated proteoforms. MS/MS analysis with electron transfer dissociation (ETD) fragmentation identified the presence of deiminated Arg at position 3 and 17 of histone H4. Moreover, based on CE-MS, isobaric mono-phosphorylated peptides obtained in the course of a kinase activity study were separated and individual positional isomers quantified.
    Schlagwörter arginine ; asparagine ; aspartic acid ; capillary electrophoresis ; citrulline ; deamidation ; dissociation ; electron transfer ; guanidinium ; histones ; ionization ; isomerization ; isomers ; mass spectrometry ; post-translational modification ; reversed-phase high performance liquid chromatography ; spectrometers ; synthetic peptides
    Sprache Englisch
    Umfang p. .
    Erscheinungsort Elsevier B.V.
    Dokumenttyp Artikel
    Anmerkung Pre-press version
    ZDB-ID 218139-3
    ISSN 0021-9673 ; 0378-4355 ; 0376-737X
    ISSN 0021-9673 ; 0378-4355 ; 0376-737X
    DOI 10.1016/j.chroma.2017.01.086
    Datenquelle NAL Katalog (AGRICOLA)

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  4. Artikel: Inactivation of microbicidal active halogen compounds by sodium thiosulphate and histidine/methionine for time-kill assays

    Böttcher, Barbara / Bettina Sarg / Herbert H. Lindner / Markus Nagl

    Journal of microbiological methods. 2017 Oct., v. 141

    2017  

    Abstract: Rapid inactivation of antimicrobial test agents after exact incubation times with microorganisms is required in time-kill assays. Sodium thiosulphate and a combination of methionine and histidine were compared for neutralisation of active halogen ... ...

    Abstract Rapid inactivation of antimicrobial test agents after exact incubation times with microorganisms is required in time-kill assays. Sodium thiosulphate and a combination of methionine and histidine were compared for neutralisation of active halogen compounds.Test oxidants were mixed with surplus sodium thiosulphate (3%–6%) or histidine/methionine (1% each) in phosphate-buffered saline and incubated for different times, followed by addition of Staphylococcus aureus, Escherichia coli, or Pseudomonas aeruginosa at 1000CFU/ml. After further incubation, quantitative cultures were performed.Thiosulphate did not sufficiently inactivate chlorine and bromine compounds, indicated by a 10-fold (S. aureus) up to >100-fold (E. coli, P. aeruginosa) reduction of CFU. This was particularly true for high concentrations of the oxidants of about 50mM, for highly reactive agents (HOCl and bromamine T) more than for chloramine T and N-chlorotaurine, and for short pre-incubation times before addition of the bacteria. By contrast, histidine/methionine proved to be suitable for chloramines and bromamine T and for low concentrations of HOCl (0.07%). HOCl at 0.7% could neither be inactivated completely by thiosulphate nor by histidine/methionine. In contrast to chlorine and bromine compounds, iodine was neutralized by thiosulphate, but not by histidine/methionine.Histidine/methionine is superior to inactivate chlorine and bromine and should replace sodium thiosulphate at least in killing tests with high concentrations of these disinfectants. Inclusion of a short reaction time (maximum one minute) of test oxidant and neutralising substance before addition of bacteria is decisive in inactivation tests to obtain reliable results.
    Schlagwörter Escherichia coli ; Pseudomonas aeruginosa ; Staphylococcus aureus ; bacteria ; bromine ; chlorine ; disinfectants ; histidine ; iodine ; methionine ; neutralization ; oxidants ; sodium ; thiosulfates
    Sprache Englisch
    Erscheinungsverlauf 2017-10
    Umfang p. 42-47.
    Erscheinungsort Elsevier B.V.
    Dokumenttyp Artikel
    ZDB-ID 604916-3
    ISSN 1872-8359 ; 0167-7012
    ISSN (online) 1872-8359
    ISSN 0167-7012
    DOI 10.1016/j.mimet.2017.07.014
    Datenquelle NAL Katalog (AGRICOLA)

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  5. Artikel ; Online: Phospholipid Acyl Chain Diversity Controls the Tissue-Specific Assembly of Mitochondrial Cardiolipins

    Gregor Oemer / Jakob Koch / Yvonne Wohlfarter / Mohammad T. Alam / Katharina Lackner / Sabrina Sailer / Lukas Neumann / Herbert H. Lindner / Katrin Watschinger / Markus Haltmeier / Ernst R. Werner / Johannes Zschocke / Markus A. Keller

    Cell Reports, Vol 30, Iss 12, Pp 4281-4291.e

    2020  Band 4

    Abstract: Summary: Cardiolipin (CL) is a phospholipid specific for mitochondrial membranes and crucial for many core tasks of this organelle. Its acyl chain configurations are tissue specific, functionally important, and generated via post-biosynthetic remodeling. ...

    Abstract Summary: Cardiolipin (CL) is a phospholipid specific for mitochondrial membranes and crucial for many core tasks of this organelle. Its acyl chain configurations are tissue specific, functionally important, and generated via post-biosynthetic remodeling. However, this process lacks the necessary specificity to explain CL diversity, which is especially evident for highly specific CL compositions in mammalian tissues. To investigate the so far elusive regulatory origin of CL homeostasis in mice, we combine lipidomics, integrative transcriptomics, and data-driven machine learning. We demonstrate that not transcriptional regulation, but cellular phospholipid compositions are closely linked to the tissue specificity of CL patterns allowing artificial neural networks to precisely predict cross-tissue CL compositions in a consistent mechanistic specificity rationale. This is especially relevant for the interpretation of disease-related perturbations of CL homeostasis, by allowing differentiation between specific aberrations in CL metabolism and changes caused by global alterations in cellular (phospho-)lipid metabolism. : The lipid architecture of biomembranes is crucial for their cellular functions. The regulatory origins of the strong tissue specificity of cardiolipins, a vital mitochondrial phospholipid class, were so far largely unresolved. Oemer et al. find that a single mechanism explains cardiolipin diversity across tissues on basis of the phospholipid environment. Keywords: cardiolipin, phospholipids, structural diversity, mouse tissue-specificity, membrane lipids, mitochondria, LC-MS/MS, lipidomics, machine learning, artificial neural network
    Schlagwörter Biology (General) ; QH301-705.5
    Sprache Englisch
    Erscheinungsdatum 2020-03-01T00:00:00Z
    Verlag Elsevier
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  6. Artikel ; Online: Multimerization results in formation of re-bindable metabolites

    Dominik Summer / Andrea Kroess / Rudolf Woerndle / Christine Rangger / Maximilian Klingler / Hubertus Haas / Leopold Kremser / Herbert H Lindner / Elisabeth von Guggenberg / Clemens Decristoforo

    PLoS ONE, Vol 13, Iss 7, p e

    A proof of concept study with FSC-based minigastrin imaging probes targeting CCK2R expression.

    2018  Band 0201224

    Abstract: Positron emission tomography (PET) with radiolabelled peptide-based tracers has attracted great interest in oncology over the past decades. The success of imaging is closely related to sufficient uptake of the radiotracer in malignant tissue and for this ...

    Abstract Positron emission tomography (PET) with radiolabelled peptide-based tracers has attracted great interest in oncology over the past decades. The success of imaging is closely related to sufficient uptake of the radiotracer in malignant tissue and for this sufficient biological half-life, particularly in the bloodstream, is mandatory. Fast enzymatic degradation during circulation leading to insufficient imaging abilities of peptide-based radioligands remains a major issue. The design of multimeric constructs, bearing multiple targeting moieties, has been widely applied to improve target interaction. This concept may also be applied to prolong the biological half-life of peptide-based radiopharmaceuticals as enzymatic degradation can result in formation of metabolites still capable to interact with the target binding site. In this study we aimed to identify such metabolites and therefore we utilized the siderophore-based bifunctional chelator fusarinine C (FSC) for the design of novel mono- and multimeric constructs, bearing minigastrin (MG) analogues as targeting moieties to address cholecystokinin-2 receptors (CCK2R) which are overexpressed in a variety of cancerous diseases and are well known for fast enzymatic degradation, particularly for truncated des-(Glu)5-MG members, such as MG11. FSC-based imaging probes were radiolabelled with gallium-68 and characterized in vitro (logD, protein binding, affinity and cell-uptake studies, stability and metabolite studies, as well as generation of corresponding metabolites by artificial enzymatic degradation) and in vivo (biodistribution in A431-CCK2R/A431-mock tumour xenografted BALB/c nude mice and stability in blood of living BALB/c mice and analysis of corresponding organ homogenates and urine to identify degradation products). In summary, multimerization was accompanied by partial improvement towards targeting abilities. Identified metabolites formed by artificial enzymatic cleavage of trimeric FSC-MG conjugates in vitro contained intact binding sequences for the ...
    Schlagwörter Medicine ; R ; Science ; Q
    Thema/Rubrik (Code) 500
    Sprache Englisch
    Erscheinungsdatum 2018-01-01T00:00:00Z
    Verlag Public Library of Science (PLoS)
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  7. Artikel ; Online: Use of Underarm Cosmetic Products in Relation to Risk of Breast Cancer

    Caroline Linhart / Heribert Talasz / Evi M. Morandi / Christopher Exley / Herbert H. Lindner / Susanne Taucher / Daniel Egle / Michael Hubalek / Nicole Concin / Hanno Ulmer

    EBioMedicine, Vol 21, Iss C, Pp 79-

    A Case-Control Study

    2017  Band 85

    Abstract: Background: Previous studies on breast cancer (BC), underarm cosmetic products (UCP) and aluminum salts have shown conflicting results. We conducted a 1:1 age-matched case-control study to investigate the risk for BC in relation to self-reported UCP ... ...

    Abstract Background: Previous studies on breast cancer (BC), underarm cosmetic products (UCP) and aluminum salts have shown conflicting results. We conducted a 1:1 age-matched case-control study to investigate the risk for BC in relation to self-reported UCP application. Methods: Self-reported history of UCP use was compared between 209 female BC patients (cases) and 209 healthy controls. Aluminum concentration in breast tissue was measured in 100 cases and 52 controls. Multivariable conditional logistic regression analysis was performed to estimate odds ratios (ORs) with 95% confidence intervals (CIs), adjusting for established BC risk factors. Findings: Use of UCP was significantly associated with risk of BC (p = 0.036). The risk for BC increased by an OR of 3.88 (95% CI 1.03–14.66) in women who reported using UCP's several times daily starting at an age earlier than 30 years. Aluminum in breast tissue was found in both cases and controls and was significantly associated to self-reported UCP use (p = 0.009). Median (interquartile) aluminum concentrations were significantly higher (p = 0.001) in cases than in controls (5.8, 2.3–12.9 versus 3.8, 2.5–5.8 nmol/g). Interpretation: Frequent use of UCPs may lead to an accumulation of aluminum in breast tissue. More than daily use of UCPs at younger ages may increase the risk of BC.
    Schlagwörter Underarm cosmetic products ; Aluminum ; Breast cancer ; Case-control study ; Epidemiology ; Medicine ; R ; Medicine (General) ; R5-920
    Thema/Rubrik (Code) 610 ; 616
    Sprache Englisch
    Erscheinungsdatum 2017-07-01T00:00:00Z
    Verlag Elsevier
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  8. Artikel ; Online: Counterregulation of cAMP-directed kinase activities controls ciliogenesis

    Monia Porpora / Simona Sauchella / Laura Rinaldi / Rossella Delle Donne / Maria Sepe / Omar Torres-Quesada / Daniela Intartaglia / Corrado Garbi / Luigi Insabato / Margherita Santoriello / Verena A. Bachmann / Matthis Synofzik / Herbert H. Lindner / Ivan Conte / Eduard Stefan / Antonio Feliciello

    Nature Communications, Vol 9, Iss 1, Pp 1-

    2018  Band 13

    Abstract: The mechanisms that control ciliogenesis have been extensively explored however the signaling mechanisms that control cilium stability remain unclear. Here the authors show that GPCR signaling regulates cilia resorption via the ubiquitin-proteasome ... ...

    Abstract The mechanisms that control ciliogenesis have been extensively explored however the signaling mechanisms that control cilium stability remain unclear. Here the authors show that GPCR signaling regulates cilia resorption via the ubiquitin-proteasome system.
    Schlagwörter Science ; Q
    Sprache Englisch
    Erscheinungsdatum 2018-03-01T00:00:00Z
    Verlag Nature Portfolio
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  9. Artikel ; Online: Counterregulation of cAMP-directed kinase activities controls ciliogenesis

    Monia Porpora / Simona Sauchella / Laura Rinaldi / Rossella Delle Donne / Maria Sepe / Omar Torres-Quesada / Daniela Intartaglia / Corrado Garbi / Luigi Insabato / Margherita Santoriello / Verena A. Bachmann / Matthis Synofzik / Herbert H. Lindner / Ivan Conte / Eduard Stefan / Antonio Feliciello

    Nature Communications, Vol 9, Iss 1, Pp 1-

    2018  Band 13

    Abstract: The mechanisms that control ciliogenesis have been extensively explored however the signaling mechanisms that control cilium stability remain unclear. Here the authors show that GPCR signaling regulates cilia resorption via the ubiquitin-proteasome ... ...

    Abstract The mechanisms that control ciliogenesis have been extensively explored however the signaling mechanisms that control cilium stability remain unclear. Here the authors show that GPCR signaling regulates cilia resorption via the ubiquitin-proteasome system.
    Schlagwörter Science ; Q
    Sprache Englisch
    Erscheinungsdatum 2018-03-01T00:00:00Z
    Verlag Nature Publishing Group
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  10. Artikel ; Online: Feedback inhibition of cAMP effector signaling by a chaperone-assisted ubiquitin system

    Laura Rinaldi / Rossella Delle Donne / Bruno Catalanotti / Omar Torres-Quesada / Florian Enzler / Federica Moraca / Robert Nisticò / Francesco Chiuso / Sonia Piccinin / Verena Bachmann / Herbert H Lindner / Corrado Garbi / Antonella Scorziello / Nicola Antonino Russo / Matthis Synofzik / Ulrich Stelzl / Lucio Annunziato / Eduard Stefan / Antonio Feliciello

    Nature Communications, Vol 10, Iss 1, Pp 1-

    2019  Band 14

    Abstract: How intracellular cAMP activate PKA is well-characterized, but PKA inactivation remains poorly understood. Here, Rinaldi et al. show that CHIP/HSP70 ubiquitinates the catalytic subunit of PKA, with implications for the human disease spinocerebellar ... ...

    Abstract How intracellular cAMP activate PKA is well-characterized, but PKA inactivation remains poorly understood. Here, Rinaldi et al. show that CHIP/HSP70 ubiquitinates the catalytic subunit of PKA, with implications for the human disease spinocerebellar ataxia 16, as patients often have CHIP mutations.
    Schlagwörter Science ; Q
    Sprache Englisch
    Erscheinungsdatum 2019-06-01T00:00:00Z
    Verlag Nature Portfolio
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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