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  1. Article ; Online: Hyperoxic exposure alters intracellular bioenergetics distribution in human pulmonary cells.

    Hossain, Tanvir / Eckmann, David M

    Life sciences

    2023  Volume 328, Page(s) 121880

    Abstract: Aims: Pulmonary oxygen toxicity is caused by exposure to a high fraction of inspired oxygen, which damages multiple cell types within the lung. The cellular basis for pulmonary oxygen toxicity includes mitochondrial dysfunction. The aim of this study ... ...

    Abstract Aims: Pulmonary oxygen toxicity is caused by exposure to a high fraction of inspired oxygen, which damages multiple cell types within the lung. The cellular basis for pulmonary oxygen toxicity includes mitochondrial dysfunction. The aim of this study was to identify the effects of hyperoxic exposure on mitochondrial bioenergetic and dynamic functions in pulmonary cells.
    Main methods: Mitochondrial respiration, inner membrane potential, dynamics (including motility), and distribution of mitochondrial bioenergetic capacity in two intracellular regions were quantified using cultured human lung microvascular endothelial cells, human pulmonary artery endothelial cells and A549 cells. Hyperoxic (95 % O
    Key findings: Mitochondrial motility was altered following all hyperoxic exposures utilized in experiments. Inhomogeneities in inner membrane potential and respiration parameters were present in each cell type following hyperoxia. The partitioning of ATP-linked respiration was also hyperoxia-duration and cell type dependent. Hyperoxic exposure lasting 48 h or longer provoked the largest alterations in mitochondrial motility and the greatest decreases in ATP-linked respiration, with a suggestion of decreases in respiration complex protein levels.
    Significance: Hyperoxic exposures of different durations produce intracellular inhomogeneities in mitochondrial dynamics and bioenergetics in pulmonary cells. Oxygen therapy is utilized commonly in clinical care and can induce undesirable decrements in bioenergy function needed to maintain pulmonary cell function and viability. There may be adjunctive or prophylactic measures that can be employed during hyperoxic exposures to prevent the mitochondrial dysfunction that signals the presence of oxygen toxcity.
    MeSH term(s) Humans ; Hyperoxia/metabolism ; Endothelial Cells/metabolism ; Lung/metabolism ; Oxygen/metabolism ; Energy Metabolism ; Adenosine Triphosphate/metabolism
    Chemical Substances Oxygen (S88TT14065) ; Adenosine Triphosphate (8L70Q75FXE)
    Language English
    Publishing date 2023-06-23
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 3378-9
    ISSN 1879-0631 ; 0024-3205
    ISSN (online) 1879-0631
    ISSN 0024-3205
    DOI 10.1016/j.lfs.2023.121880
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Identification of m

    Hasan, Mahbub / Nishat, Zakia Sultana / Hasan, Md Soyib / Hossain, Tanvir / Ghosh, Ajit

    Biochemistry and biophysics reports

    2024  Volume 38, Page(s) 101677

    Abstract: Eukaryotic messenger RNAs (mRNAs) transcend their predominant function of protein encoding by incorporating auxiliary components that ultimately contribute to their processing, transportation, translation, and decay. In doing so, additional layers of ... ...

    Abstract Eukaryotic messenger RNAs (mRNAs) transcend their predominant function of protein encoding by incorporating auxiliary components that ultimately contribute to their processing, transportation, translation, and decay. In doing so, additional layers of modifications are incorporated in mRNAs at post-transcriptional stage. Among them, N6-methyladenosine (m
    Language English
    Publishing date 2024-03-12
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2831046-9
    ISSN 2405-5808 ; 2405-5808
    ISSN (online) 2405-5808
    ISSN 2405-5808
    DOI 10.1016/j.bbrep.2024.101677
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Mitochondrial dynamics involves molecular and mechanical events in motility, fusion and fission.

    Green, Adam / Hossain, Tanvir / Eckmann, David M

    Frontiers in cell and developmental biology

    2022  Volume 10, Page(s) 1010232

    Abstract: Mitochondria are cell organelles that play pivotal roles in maintaining cell survival, cellular metabolic homeostasis, and cell death. Mitochondria are highly dynamic entities which undergo fusion and fission, and have been shown to be very ... ...

    Abstract Mitochondria are cell organelles that play pivotal roles in maintaining cell survival, cellular metabolic homeostasis, and cell death. Mitochondria are highly dynamic entities which undergo fusion and fission, and have been shown to be very motile
    Language English
    Publishing date 2022-10-19
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2737824-X
    ISSN 2296-634X
    ISSN 2296-634X
    DOI 10.3389/fcell.2022.1010232
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Production of Recombinant Hepatitis B virus (HBV) and Detection of HBV in Infected Human Liver Organoids.

    Hossain, Tanvir / Romal, Shahla / Mahmoudi, Tokameh

    Bio-protocol

    2022  Volume 12, Issue 8, Page(s) e4392

    Abstract: The absence of long term, primary ... ...

    Abstract The absence of long term, primary untransformed
    Language English
    Publishing date 2022-04-20
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2833269-6
    ISSN 2331-8325 ; 2331-8325
    ISSN (online) 2331-8325
    ISSN 2331-8325
    DOI 10.21769/BioProtoc.4392
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Generation, Maintenance and HBV Infection of Human Liver Organoids.

    Romal, Shahla / Hossain, Tanvir / Mahmoudi, Tokameh

    Bio-protocol

    2022  Volume 12, Issue 6, Page(s) e4358

    Abstract: Hepatitis B virus (HBV) infection represents a major public health problem infecting approximately 400 million people worldwide. Despite the availability of a preventive vaccine and anti-viral therapies, chronic HBV infection remains a major health issue ...

    Abstract Hepatitis B virus (HBV) infection represents a major public health problem infecting approximately 400 million people worldwide. Despite the availability of a preventive vaccine and anti-viral therapies, chronic HBV infection remains a major health issue because it increases the risk of developing liver cirrhosis and hepatocellular carcinoma (HCC). The lack of a relevant
    Language English
    Publishing date 2022-03-20
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2833269-6
    ISSN 2331-8325 ; 2331-8325
    ISSN (online) 2331-8325
    ISSN 2331-8325
    DOI 10.21769/BioProtoc.4358
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Mobility in immersed granular materials upon cyclic loading.

    Hossain, Tanvir / Rognon, Pierre

    Physical review. E

    2020  Volume 102, Issue 2-1, Page(s) 22904

    Abstract: We study the mobility of objects embedded in an immersed granular packing and subjected to cyclic loadings. With this aim, we conducted uplift experiments whereby a horizontal plate is embedded in the packing and subjected to a vertical cyclic force ... ...

    Abstract We study the mobility of objects embedded in an immersed granular packing and subjected to cyclic loadings. With this aim, we conducted uplift experiments whereby a horizontal plate is embedded in the packing and subjected to a vertical cyclic force oscillating between zero and a maximum amplitude. Tests performed at different cyclic force frequencies and amplitudes evidence the development of three mobility regimes whereby the plate stays virtually immobile, moves up steadily, or slowly creeps upwards. Results show that steady plate uplift can occur at lower force magnitudes when the frequency is increased. We propose an interpretation of this frequency-weakening behavior based on force relaxation experiments and on the analysis of the mobility response of theoretical viscoelastoplastic mechanical analog. These results and analysis point out inherent differences in mobility response between steady and cyclic loadings in immersed granular materials.
    Language English
    Publishing date 2020-09-18
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2844562-4
    ISSN 2470-0053 ; 2470-0045
    ISSN (online) 2470-0053
    ISSN 2470-0045
    DOI 10.1103/PhysRevE.102.022904
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: 3D human liver organoids: An in vitro platform to investigate HBV infection, replication and liver tumorigenesis.

    Rao, Shringar / Hossain, Tanvir / Mahmoudi, Tokameh

    Cancer letters

    2021  Volume 506, Page(s) 35–44

    Abstract: Hepatitis B Virus (HBV) infection is a leading cause of chronic liver cirrhosis and hepatocellular carcinoma (HCC) with an estimated 400 million people infected worldwide. The precise molecular mechanisms underlying HBV replication and tumorigenesis have ...

    Abstract Hepatitis B Virus (HBV) infection is a leading cause of chronic liver cirrhosis and hepatocellular carcinoma (HCC) with an estimated 400 million people infected worldwide. The precise molecular mechanisms underlying HBV replication and tumorigenesis have remained largely uncharacterized due to the lack of a primary cell model to study HBV, a virus that exhibits stringent host species and cell-type specificity. Organoid technology has recently emerged as a powerful tool to investigate human diseases in a primary 3D cell-culture system that maintains the organisation and functionality of the tissue of origin. In this review, we describe the utilisation of human liver organoid platforms to study HBV. We first present the different categories of liver organoids and their demonstrated ability to support the complete HBV replication cycle. We then discuss the potential applications of liver organoids in investigating HBV infection and replication, related tumorigenesis and novel HBV-directed therapies. Liver organoids can be genetically modified, patient-derived, expanded and biobanked, thereby serving as a clinically-relevant, human, primary cell-derived platform to investigate HBV. Finally, we provide insights into the future applications of this powerful technology in the context of HBV-infection and HCC.
    MeSH term(s) Carcinogenesis ; Hepatitis B/complications ; Hepatitis B virus/physiology ; Humans ; Liver/cytology ; Liver/virology ; Liver Neoplasms/etiology ; Organoids/virology ; Virus Replication/physiology
    Language English
    Publishing date 2021-03-04
    Publishing country Ireland
    Document type Journal Article ; Review
    ZDB-ID 195674-7
    ISSN 1872-7980 ; 0304-3835
    ISSN (online) 1872-7980
    ISSN 0304-3835
    DOI 10.1016/j.canlet.2021.02.024
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Hyperbaric oxygen alters intracellular bioenergetics distribution in human dermal fibroblasts.

    Green, Adam / Hossain, Tanvir / Eckmann, David M

    Life sciences

    2021  Volume 278, Page(s) 119616

    Abstract: Aims: Hyperbaric oxygen therapy (HBOT), used to promote wound healing, has limited efficacy in many clinical conditions. Wound healing exerts bioenergetic demands on cells that can exceed their intrinsic bioenergetic capacity to proliferate and migrate. ...

    Abstract Aims: Hyperbaric oxygen therapy (HBOT), used to promote wound healing, has limited efficacy in many clinical conditions. Wound healing exerts bioenergetic demands on cells that can exceed their intrinsic bioenergetic capacity to proliferate and migrate. The aim of this investigation was to quantify the effects of HBOT on mitochondrial dynamics and bioenergetics functions in cells relevant to wound healing.
    Main methods: High-resolution respirometry and fluorescence microscopy were used to quantify mitochondrial respiration, intermembrane potential, dynamics, including motility, and the intracellular distribution of mitochondrial bioenergetic capacity partitioned into perinuclear and cell peripheral regions in cultured human dermal fibroblasts. Cells were subjected to a range of gas mixtures and hyperbaric pressures, including conditions utilized in clinical care.
    Key findings: Motility was reduced immediately following all HBOT exposures utilized in experiments. Inhomogeneities in intermembrane potential and respiration parameters were produced by different HBOT conditions. The partitioning of ATP-linked respiration was also HBOT-condition dependent. Application of HBOT at common clinical pressure and oxygen conditions resulted in the largest immediate decrement in mitochondrial motility and reductions in ATP-linked respiration in both the cell periphery and perinuclear zones. Aberrations in motility and respiration were also present 6 h after exposure.
    Significance: HBOT produces intracellular distinctions and inhomogeneities in mitochondrial dynamics and bioenergetics. HBOT as is commonly applied in clinical medicine induced undesirable and persistent alterations in bioenergy function needed to support cell migration and/or proliferation. There may be alternative HBOT parameters that more effectively engender maintenance and adequacy of intracellular bioenergy supply to promote wound healing.
    MeSH term(s) Cell Line ; Energy Metabolism ; Fibroblasts/metabolism ; Humans ; Hyperbaric Oxygenation ; Mitochondria/metabolism ; Mitochondrial Dynamics ; Oxygen/metabolism ; Skin/cytology ; Wound Healing
    Chemical Substances Oxygen (S88TT14065)
    Language English
    Publishing date 2021-05-17
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 3378-9
    ISSN 1879-0631 ; 0024-3205
    ISSN (online) 1879-0631
    ISSN 0024-3205
    DOI 10.1016/j.lfs.2021.119616
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Hyperbaric oxygen alters intracellular bioenergetics distribution in human dermal fibroblasts

    Green, Adam / Hossain, Tanvir / Eckmann, David M

    Life sciences. 2021 Aug. 01, v. 278

    2021  

    Abstract: Hyperbaric oxygen therapy (HBOT), used to promote wound healing, has limited efficacy in many clinical conditions. Wound healing exerts bioenergetic demands on cells that can exceed their intrinsic bioenergetic capacity to proliferate and migrate. The ... ...

    Abstract Hyperbaric oxygen therapy (HBOT), used to promote wound healing, has limited efficacy in many clinical conditions. Wound healing exerts bioenergetic demands on cells that can exceed their intrinsic bioenergetic capacity to proliferate and migrate. The aim of this investigation was to quantify the effects of HBOT on mitochondrial dynamics and bioenergetics functions in cells relevant to wound healing.High-resolution respirometry and fluorescence microscopy were used to quantify mitochondrial respiration, intermembrane potential, dynamics, including motility, and the intracellular distribution of mitochondrial bioenergetic capacity partitioned into perinuclear and cell peripheral regions in cultured human dermal fibroblasts. Cells were subjected to a range of gas mixtures and hyperbaric pressures, including conditions utilized in clinical care.Motility was reduced immediately following all HBOT exposures utilized in experiments. Inhomogeneities in intermembrane potential and respiration parameters were produced by different HBOT conditions. The partitioning of ATP-linked respiration was also HBOT-condition dependent. Application of HBOT at common clinical pressure and oxygen conditions resulted in the largest immediate decrement in mitochondrial motility and reductions in ATP-linked respiration in both the cell periphery and perinuclear zones. Aberrations in motility and respiration were also present 6 h after exposure.HBOT produces intracellular distinctions and inhomogeneities in mitochondrial dynamics and bioenergetics. HBOT as is commonly applied in clinical medicine induced undesirable and persistent alterations in bioenergy function needed to support cell migration and/or proliferation. There may be alternative HBOT parameters that more effectively engender maintenance and adequacy of intracellular bioenergy supply to promote wound healing.
    Keywords bioenergy ; cell movement ; energy metabolism ; fibroblasts ; fluorescence microscopy ; humans ; medicine ; mitochondria ; oxygen ; therapeutics
    Language English
    Dates of publication 2021-0801
    Publishing place Elsevier Inc.
    Document type Article
    ZDB-ID 3378-9
    ISSN 1879-0631 ; 0024-3205
    ISSN (online) 1879-0631
    ISSN 0024-3205
    DOI 10.1016/j.lfs.2021.119616
    Database NAL-Catalogue (AGRICOLA)

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  10. Article: Identification of epitranscriptomic methylation marker genes in Arabidopsis and their expression profiling in response to developmental, anatomical, and environmental modulations

    Nishat, Zakia Sultana / Hasan, Md. Soyib / Islam, Md. Sifatul / Hossain, Tanvir / Ghosh, Ajit

    Current plant biology. 2022 June, v. 30

    2022  

    Abstract: RNA methylation has already conquered attention in cancer research and anticipated a similar contribution in plant stress modulation mechanism. Among all kinds of mRNA methylation, N⁶-methyladenosine (m⁶A) modifications are ubiquitous and conserved, ... ...

    Abstract RNA methylation has already conquered attention in cancer research and anticipated a similar contribution in plant stress modulation mechanism. Among all kinds of mRNA methylation, N⁶-methyladenosine (m⁶A) modifications are ubiquitous and conserved, making m⁶A regulatory genes worthwhile to investigate. This present study aims to identify m⁶A regulatory genes in Arabidopsis and their correlation with stress conditions. A total of 29 m⁶A regulatory genes (6 writers, 6 erasers, and 17 readers) were identified in Arabidopsis that encode 55 proteins (8 writers, 14 erasers, and 33 readers). Among these 29 identified genes, one eraser gene pair and two reader gene pairs are found to have segmental duplication. Most of the m⁶A regulatory genes are highly expressed in callus tissue. In senescence, writers and readers are shown higher expression than erasers. In wounding stress, all six writers such as AtMTA, AtMTB, AtMTC, AtHAKAI, AtVIRILIZER, and AtFIP37 were constantly downregulated; two readers AtCPSF30-L3, and AtECT10 were constantly up-regulated and three erasers such as AtALKBH9A, AtALKBH10A, and AtALKBH8B were down-regulated in both early and late stages. Differential expression pattern of m⁶A regulatory genes have substantiated their significant correlation in the stress modulation pathway and demands further investigation. This study will encourage researchers to functionally validate and elucidate the molecular mechanism of plants utilizing RNA methylation in stress tolerance, thus, will facilitate crop engineering.
    Keywords Arabidopsis ; callus ; gene expression regulation ; methylation ; plant stress ; stress tolerance
    Language English
    Dates of publication 2022-06
    Publishing place Elsevier B.V.
    Document type Article
    ZDB-ID 2785418-8
    ISSN 2214-6628
    ISSN 2214-6628
    DOI 10.1016/j.cpb.2022.100247
    Database NAL-Catalogue (AGRICOLA)

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