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Article ; Online: Dynamics of benthic microeukaryotic communities in a mangrove wetland invaded by Spartina alterniflora: Effects of vegetation, seasonality, and sediment depth.

Wang, Ying / Kong, Jie / Gu, Songsong / Huang, Bangqin / Sun, Ping

2024 Volume 916, Page(s) 170231

Abstract: Benthic microeukaryotes are crucial mediators of biogeochemical cycles in coastal wetland ecosystems, yet their spatial and temporal variability remains poorly understood. This study delineates the diversity patterns of benthic microeukaryotes in a ... ...

Abstract	Benthic microeukaryotes are crucial mediators of biogeochemical cycles in coastal wetland ecosystems, yet their spatial and temporal variability remains poorly understood. This study delineates the diversity patterns of benthic microeukaryotes in a Spartina alterniflora-invaded mangrove ecosystem in Fujian, China. Using high-throughput sequencing of 18S rRNA gene transcripts, we identified the influences of vegetation, seasonality, and sediment depth on microeukaryotic communities. We discovered that vegetation cover significantly affects community composition, primarily driven by nutrient concentrations and pH. The community structure of microeukaryotes varied seasonally and vertically, correlating with changes in sediment temperature, pH, salinity, and fucoxanthin concentration. Notably, invasive Spartina alterniflora habitats showed enhanced heterotrophic interactions, suggesting that invasive species can reshape benthic microeukaryotic co-occurrence patterns. Seasonal co-occurrence patterns revealed dominant Bacillariophyta assemblages exhibited distinct network modules enriched in the cold (spring) and warm (summer and fall) seasons, respectively, which indicated potential ecological niche differentiation. Our findings reveal the complex relationships between environmental factors and benthic microeukaryotic diversity, offering insights into microbial responses to natural and invasive vegetation influences.
MeSH term(s)	Wetlands ; Ecosystem ; Introduced Species ; Poaceae ; China
Language	English
Publishing date	2024-01-19
Publishing country	Netherlands
Document type	Journal Article
ZDB-ID	121506-1
ISSN	1879-1026 ; 0048-9697
ISSN (online)	1879-1026
ISSN	0048-9697
DOI	10.1016/j.scitotenv.2024.170231
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Article ; Online: Biogeochemical factors regulating photosynthetically dissolved organic carbon produced by phytoplankton in the Taiwan Strait.

Kang, Jianhua / Liu, Xuancheng / Lin, Xiangyuan / Chen, Xianwu / Luo, Zhaohe / Huang, Bangqin

Environmental research

2024 Volume 252, Issue Pt 4, Page(s) 119090

Abstract: The distribution and mechanisms of photosynthetically dissolved organic carbon (PDOC) released by marine phytoplankton are frequently neglected and inadequately understood because most studies on carbon sequestration capacity have focused on ... ...

Abstract	The distribution and mechanisms of photosynthetically dissolved organic carbon (PDOC) released by marine phytoplankton are frequently neglected and inadequately understood because most studies on carbon sequestration capacity have focused on photosynthetic particulate organic carbon. In this study, percentage extracellular release (PER) and its environmental influencing factors were investigated for 10 cruises in the Taiwan Strait during 2006-2023. The results indicated that the PER increased horizontally from the nearshore to the off-shelf and vertically from the surface to the bottom within the euphotic zone. PER tends to be low in eutrophic waters such as upwellings and estuaries and high in oligotrophic waters. The study revealed that the average contribution of PDOC to total primary productivity (TPP) in the Taiwan Strait could reach 18.2 ± 11.7%, which is similar to the previously estimated global oceanic values. PDOC production satisfied approximately 25% the carbon requirements of heterotropic bacteria (HB). A detailed analysis of the PER combined with model simulations proved that the distribution of the PER in the Taiwan Strait was caused by the joint contribution of irradiance, size-fractionated phytoplankton, and nutrient stoichiometry. Our results contradict the view that the PER is a constant factor that is unaffected by TPP. However, there was a significant negative correlation between the PER and TPP. The PDOC was always lower than the bacterial carbon demand for a broad range of bacterial growth efficiencies, suggesting a weak coupling between phytoplankton exudation and bacterial metabolism. This challenges the idea that there is a well-coupled relationship between bacteria and phytoplankton present on the continental shelf. These findings indicate significant discrepancies in PDOC mechanisms and the quantitative importance of nearshore eutrophic and off-shelf oligotrophic environments. Consequently, it is unwise to use uniform PERs without differentiation under trophic conditions when reevaluating and appraising marine carbon fixation.
Language	English
Publishing date	2024-05-07
Publishing country	Netherlands
Document type	Journal Article
ZDB-ID	205699-9
ISSN	1096-0953 ; 0013-9351
ISSN (online)	1096-0953
ISSN	0013-9351
DOI	10.1016/j.envres.2024.119090
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Article: Biogeographic Role of the Kuroshio Current Intrusion in the Microzooplankton Community in the Boundary Zone of the Northern South China Sea

Sun, Ping / Zhang, Silu / Wang, Ying / Huang, Bangqin

Microorganisms. 2021 May 20, v. 9, no. 5

2021

Abstract: Kuroshio Current intrusion (KCI) has significant impacts on the oceanographic conditions and ecological processes of the Pacific-Asian marginal seas. Little is known to which extent and how, specifically, the microzooplankton community can be influenced ... ...

Abstract	Kuroshio Current intrusion (KCI) has significant impacts on the oceanographic conditions and ecological processes of the Pacific-Asian marginal seas. Little is known to which extent and how, specifically, the microzooplankton community can be influenced through the intrusion. Here, we focused on ciliates that often dominated the microzooplankton community and investigated their communities using high-throughput sequencing of 18S rRNA gene transcripts in the northern South China Sea (NSCS), where the Kuroshio Current (KC) intrudes frequently. We first applied an isopycnal mixing model to assess the fractional contribution of the KC to the NSCS. The ciliate community presented a provincial distribution pattern corresponding to more and less Kuroshio-influenced stations. Structural equation modeling revealed a significant impact of the KCI on the community, while environmental variables had a marginal impact. KCI-sensitive OTUs were taxonomically diverse but mainly belonged to classes Spirotrichea and Phyllopharyngea, suggesting the existence of core ciliates responding to the KCI. KCI-sensitive OTUs were grouped into two network modules that showed contrasting abundance behavior with the KC fraction gradient, reflecting differential niches (i.e., winner and loser) in the ciliate community during the Kuroshio intrusion scenarios. Our study showed that the Kuroshio intrusion, rather than environmental control, was particularly detrimental to the oligotrophic microzooplankton community.
Keywords	Phyllopharyngea ; Spirotrichea ; equations ; genes ; geographical distribution ; zooplankton ; South China Sea
Language	English
Dates of publication	2021-0520
Publishing place	Multidisciplinary Digital Publishing Institute
Document type	Article
Note	NAL-AP-2-clean
ZDB-ID	2720891-6
ISSN	2076-2607
ISSN	2076-2607
DOI	10.3390/microorganisms9051104
Database	NAL-Catalogue (AGRICOLA)

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Article: Protistan-Bacterial Microbiota Exhibit Stronger Species Sorting and Greater Network Connectivity Offshore than Nearshore across a Coast-to-Basin Continuum.

Sun, Ping / Huang, Xin / Wang, Ying / Huang, Bangqin

mSystems

2021 Volume 6, Issue 5, Page(s) e0010021

Abstract: Little is known regarding how community assembly and species association vary with habitat and depth. Here, we examined the assembly and association of protistan and bacterial communities across a coast-shelf-slope-basin gradient of the South China Sea ... ...

Abstract	Little is known regarding how community assembly and species association vary with habitat and depth. Here, we examined the assembly and association of protistan and bacterial communities across a coast-shelf-slope-basin gradient of the South China Sea using high-throughput sequencing of the V3 and V4 regions of the rRNA gene transcript. Our study revealed that homogenizing dispersal and drift exerted an influence on protistan communities comparable to that on bacterial communities. In contrast, selection and dispersal limitation exerted contrasting effects on the two microbial communities. Community assembly was governed to a greater degree by selection than by dispersal limitation in the bacterial community, and this was much lower in the protistan community. Moreover, this organismal assembly pattern was robust with habitat and depth. However, the relative importance of selection to dispersal limitation varied with habitat and depth in both communities, where horizontally it was higher offshore than nearshore and vertically it was lower in the bottom or deep chlorophyll maximum (DCM) than on the surface. The offshore possessed more microbial network complexity and more associations among microbial taxa than the nearshore, and vertically, the bottom possessed more complexity than the surface and the DCM. Moreover, temperature is strongly associated with the composition and co-occurrence of microbial communities, implying that temperature plays a dominant role in the selection of the protistan-bacterial microbiome across a coast-to-basin continuum. This study contributes to our understanding of the assembly mechanism and species association of protistan-bacterial microbiota across multiple habitats and depths.
Language	English
Publishing date	2021-10-12
Publishing country	United States
Document type	Journal Article
ISSN	2379-5077
ISSN	2379-5077
DOI	10.1128/mSystems.00100-21
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Article ; Online: From the Sunlit to the Aphotic Zone: Assembly Mechanisms and Co-Occurrence Patterns of Protistan-Bacterial Microbiotas in the Western Pacific Ocean.

Sun, Ping / Wang, Ying / Zhang, Yifan / Logares, Ramiro / Cheng, Peng / Xu, Dapeng / Huang, Bangqin

mSystems

2023 Volume 8, Issue 2, Page(s) e0001323

Abstract: We know little about the assembly processes and association patterns of microbial communities below the photic zone. In marine pelagic systems, there are insufficient observational data regarding why and how the microbial assemblies and associations vary ...

Abstract	We know little about the assembly processes and association patterns of microbial communities below the photic zone. In marine pelagic systems, there are insufficient observational data regarding why and how the microbial assemblies and associations vary from photic to aphotic zones. In this study, we investigated size-fractionated oceanic microbiotas, specifically free-living (FL; 0.22 to 3 μm) and particle-associated (PA; >3 μm) bacteria and protists (0.22 to 200 μm) collected from the surface to 2,000 m in the western Pacific Ocean, to see how assembly mechanisms and association patterns changed from photic to aphotic zones. Taxonomic analysis revealed a distinct community composition between photic and aphotic zones that was largely driven by biotic associations rather than abiotic factors. Aphotic community co-occurrence was less widespread and robust than its photic counterparts, and biotic associations were crucial in microbial co-occurrence, having a higher influence on photic than aphotic co-occurrences. The decrease in biotic associations and the increase in dispersal limitation from the photic to the aphotic zone affect the deterministic-stochastic balance, leading to a more stochastic-process-driven community assembly for all three microbial groups in the aphotic zone. Our findings significantly contribute to our understanding of how and why microbial assembly and co-occurrence vary from photic to aphotic zones, offering insight into the dynamics of the protistan-bacterial microbiota in the western Pacific's photic and aphotic zones.
MeSH term(s)	Pacific Ocean ; Microbiota ; Bacteria ; Oceans and Seas
Language	English
Publishing date	2023-02-27
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ISSN	2379-5077
ISSN (online)	2379-5077
DOI	10.1128/msystems.00013-23
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Article: Biogeographic Role of the Kuroshio Current Intrusion in the Microzooplankton Community in the Boundary Zone of the Northern South China Sea.

Sun, Ping / Zhang, Silu / Wang, Ying / Huang, Bangqin

Microorganisms

2021 Volume 9, Issue 5

Abstract	Kuroshio Current intrusion (KCI) has significant impacts on the oceanographic conditions and ecological processes of the Pacific-Asian marginal seas. Little is known to which extent and how, specifically, the microzooplankton community can be influenced through the intrusion. Here, we focused on ciliates that often dominated the microzooplankton community and investigated their communities using high-throughput sequencing of 18S rRNA gene transcripts in the northern South China Sea (NSCS), where the Kuroshio Current (KC) intrudes frequently. We first applied an isopycnal mixing model to assess the fractional contribution of the KC to the NSCS. The ciliate community presented a provincial distribution pattern corresponding to more and less Kuroshio-influenced stations. Structural equation modeling revealed a significant impact of the KCI on the community, while environmental variables had a marginal impact. KCI-sensitive OTUs were taxonomically diverse but mainly belonged to classes
Language	English
Publishing date	2021-05-20
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	2720891-6
ISSN	2076-2607
ISSN	2076-2607
DOI	10.3390/microorganisms9051104
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Article ; Online: Protist diversity and community assembly in surface sediments of the South China Sea.

Wu, Wenxue / Huang, Bangqin

MicrobiologyOpen

2019 Volume 8, Issue 10, Page(s) e891

Abstract: Protists are pivotal components of marine ecosystems in terms of their high diversity, but protist communities have been poorly explored in benthic environments. Here, we investigated protist diversity and community assembly in surface sediments in the ... ...

Abstract	Protists are pivotal components of marine ecosystems in terms of their high diversity, but protist communities have been poorly explored in benthic environments. Here, we investigated protist diversity and community assembly in surface sediments in the South China Sea (SCS) at a basin scale. Pyrosequencing of 18S rDNA was performed for a total of six samples taken from the surface seafloor at water depths ranging from 79 to 2,939 m. We found that Cercozoa was the dominant group, accounting for an average of 39.9% and 25.3% of the reads and operational taxonomic units (OTUs), respectively. The Cercozoa taxa were highly diverse, comprising 14 phylogenetic clades, six of which were affiliated with unknown groups belonging to Filosa and Endomyxa. Fungi were also an important group in both read- (18.1% on average) and OTU-derived (9.3% on average) results. Moreover, the turnover patterns of the protist communities were differently explained by species sorting (53.3%), dispersal limitation (33.3%), mass effects (0%), and drift (13.3%). In summary, our findings show that the basin-wide protist communities in the surface sediments of the SCS are primarily dominated by Cercozoa and are mainly assembled by species sorting and dispersal limitation.
MeSH term(s)	China ; Cluster Analysis ; DNA, Fungal/chemistry ; DNA, Fungal/genetics ; DNA, Protozoan/chemistry ; DNA, Protozoan/genetics ; DNA, Ribosomal/chemistry ; DNA, Ribosomal/genetics ; Eukaryota/classification ; Eukaryota/genetics ; Geologic Sediments/microbiology ; Geologic Sediments/parasitology ; Microbiota ; Phylogeny ; RNA, Ribosomal, 18S/genetics ; Sequence Analysis, DNA
Chemical Substances	DNA, Fungal ; DNA, Protozoan ; DNA, Ribosomal ; RNA, Ribosomal, 18S
Language	English
Publishing date	2019-06-19
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2661368-2
ISSN	2045-8827 ; 2045-8827
ISSN (online)	2045-8827
ISSN	2045-8827
DOI	10.1002/mbo3.891
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Article ; Online: Water masses and their associated temperature and cross-domain biotic factors co-shape upwelling microbial communities.

Sun, Ping / Wang, Ying / Huang, Xin / Huang, Bangqin / Wang, Lei

Water research

2022 Volume 215, Page(s) 118274

Abstract: Disentangling the drivers and mechanisms that shape microbial communities in a river-influenced coastal upwelling system requires considering a hydrologic dimension that can drive both deterministic and stochastic community assembly by generating ... ...

Abstract	Disentangling the drivers and mechanisms that shape microbial communities in a river-influenced coastal upwelling system requires considering a hydrologic dimension that can drive both deterministic and stochastic community assembly by generating hydrological heterogeneity and dispersal events. Additionally, ubiquitous and complex microbial interactions can play a significant role in community structuring. However, how the hydrology, biotic, and abiotic factors collectively shape microbial distribution in the hydrologically complicated river plume-upwelling coupling system remains unknown. Through underway sampling and daily observations, we employed 16S and 18S ribosomal RNA sequencing to disentangle drivers and mechanisms shaping the protist-bacteria microbiota in a river-influenced coastal upwelling system. Our findings indicate that the composition of microbial communities was water mass specific. Collectively, water mass, local water chemistry (mostly temperature) and biotic interaction (mostly cross-domain biotic interaction) shaped the protistan-bacterial communities. In comparison to protists, bacteria were more influenced by abiotic factors such as temperature than by cross-domain biotic factors, implying a stronger coupling of geochemical cycles. Both deterministic and stochastic processes had an effect on the distribution of microbial communities, but deterministic processes were more important for bacteria and were especially pronounced for upwelling communities. The co-occurrence network revealed strong associations between the protistan assemblages Orchrophyta and Ciliophora and the bacterial assemblages Alphaproteobacteria, Deltaproteobacteria, and Bacteroidetes, which may reflect predation and mutualism interactions. Overall, this study emphasizes the importance of taking water masses, temperature and domains of life into account when seeking to understand the drivers and assemblies of protist-bacteria microbiome dynamics in coastal upwelling systems, which is especially true given the complex and dynamic nature of the coastal ecosystem.
MeSH term(s)	Bacteria/genetics ; Biota ; Microbiota ; Temperature ; Water
Chemical Substances	Water (059QF0KO0R)
Language	English
Publishing date	2022-03-10
Publishing country	England
Document type	Journal Article
ZDB-ID	202613-2
ISSN	1879-2448 ; 0043-1354
ISSN (online)	1879-2448
ISSN	0043-1354
DOI	10.1016/j.watres.2022.118274
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Article ; Online: Do marine planktonic ciliates follow Bergmann's rule?

Liu, Kailin / Jiang, Siyu / Montagnes, David J. S. / Liu, Hongbin / Zheng, Liping / Huang, Bangqin / Liu, Xin / Chen, Bingzhang

Ecography. 2023 June, v. 2023, no. 6 p.e06452-

2023

Abstract: Body size is a fundamental trait determining individual fitness and ecological processes. Reduction in body size with increasing temperature has been widely observed in most ectotherms and endotherms, known as Bergmann's rule. However, we lack data to ... ...

Abstract	Body size is a fundamental trait determining individual fitness and ecological processes. Reduction in body size with increasing temperature has been widely observed in most ectotherms and endotherms, known as Bergmann's rule. However, we lack data to assess if ciliates, the major consumers of marine primary production, follow Bergmann's rule and what drives the distributions of their cell size. Here, we examined a data set (287 samples) collected across the global oceans to investigate biogeographic patterns in the mean cell‐size of ciliate communities. By measuring the sizes of every ciliate cell (< 10 to > 300 per sample), we found that community cell‐size increased with increasing latitude, conforming to Bergmann's rule. We then addressed the cause. Temperature was a main driver of the trend. Ciliate community mean cell‐size decreased 34% when temperature increased from 3.5 to 31°C, implying that temperature may be a direct physiological driver. In addition, prey (phytoplankton) size also influenced the trend, with ciliate size increasing by 35% across the gradient of phytoplankton size (0.6–15.5 μm). Generally, these findings emphasized the importance of how both biotic and abiotic factors affect size distribution of marine ciliates, a key component of pelagic ecosystems. Our novel, extensive dataset and the predictive trends arising from them contribute to understanding how climate change will influence pelagic ecosystem functions.
Keywords	Ciliophora ; body size ; climate change ; data collection ; ecosystems ; ectothermy ; endothermy ; geographical distribution ; latitude ; phytoplankton ; primary productivity ; temperature
Language	English
Dates of publication	2023-06
Publishing place	Blackwell Publishing Ltd
Document type	Article ; Online
Note	JOURNAL ARTICLE
ZDB-ID	1112659-0
ISSN	0906-7590
ISSN	0906-7590
DOI	10.1111/ecog.06452
Database	NAL-Catalogue (AGRICOLA)

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Article: Off‐Coast Phytoplankton Bloom in the Taiwan Strait During the Northeasterly Monsoon Wind Relaxation Period

Zhao, Zhonghua / Oey, Lie‐Yauw / Huang, Bangqin / Lu, Wenfang / Jiang, Yuwu

Journal of geophysical research. 2022 Sept., v. 127, no. 9

2022

Abstract: This study applied cruise, model, and satellite data to analyze the off‐coast phytoplankton blooming during the late fall to early spring monsoon period in the Taiwan Strait when northeasterly wind prevails. Based on the composite and self‐organizing map ...

Abstract	This study applied cruise, model, and satellite data to analyze the off‐coast phytoplankton blooming during the late fall to early spring monsoon period in the Taiwan Strait when northeasterly wind prevails. Based on the composite and self‐organizing map analyses, the three data sets consistently show high chlorophyll‐a concentration near the along‐shore front during the down‐front northeasterly wind relaxation period while lower concentration when relatively strong wind is persistent. Meanwhile, the off‐coast blooming always coincides with intense near‐surface stratification when the northeasterly wind relaxes. Diagnoses of balanced Richardson number, Ertel potential vorticity and instability energy budget from high‐resolution cruise observations and model results demonstrate that vigorous submesoscale symmetric and baroclinic instabilities can develop near the along‐shore front under the down‐front NE wind. Diagnoses of modeled buoyancy and chlorophyll‐a budget equations further suggest the submesoscale instabilities lead to rapid near‐surface restratification and offshore stretching of the along‐shore front within the upper 10‐m of the mixed layer when the down‐front NE wind relaxes, favoring the surface 10‐m phytoplankton growth. As comparison, contribution of the larger‐scale advection related with geostrophic adjustment and Ekman transport to the chlorophyll‐a increment reached beyond the middle layer of ∼20‐m depth.
Keywords	advection ; algal blooms ; autumn ; chlorophyll ; energy ; geophysics ; models ; monsoon season ; phytoplankton ; remote sensing ; research ; spring ; wind speed ; Taiwan
Language	English
Dates of publication	2022-09
Publishing place	John Wiley & Sons, Ltd
Document type	Article
Note	JOURNAL ARTICLE
ZDB-ID	161667-5
ISSN	2169-9291 ; 2169-9275 ; 0148-0227 ; 0196-2256
ISSN (online)	2169-9291
ISSN	2169-9275 ; 0148-0227 ; 0196-2256
DOI	10.1029/2022JC018752
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