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  1. Article ; Online: Akt1 is involved in HCV release by promoting endoplasmic reticulum-to-endosome transition of infectious virions.

    Lee, Wei-Ping / Liao, Shi-Xian / Huang, Yi-Hsiang / Hou, Ming-Chih / Lan, Keng-Hsin

    Life sciences

    2024  Volume 338, Page(s) 122412

    Abstract: Aims: Hepatitis C virus (HCV) relies on the viral and host factors to complete its life cycle. It has evolved to profit from Akt activation at some stage in its life cycle through various mechanisms, notably by activating lipogenesis, which is crucial ... ...

    Abstract Aims: Hepatitis C virus (HCV) relies on the viral and host factors to complete its life cycle. It has evolved to profit from Akt activation at some stage in its life cycle through various mechanisms, notably by activating lipogenesis, which is crucial for infectious virions production.
    Materials and methods: By employing an Akt-specific inhibitor, the impact of Akt on intracellular and extracellular infectivity was investigated. To ascertain the role of Akt in the HCV life cycle, the two-part cell culture-derived HCV infection protocol utilizing Akt1 small interfering RNAs (siRNAs) was implemented. The impact of Akt1 on intracellular HCV transition was determined using membrane flotation assay and proximity ligation assay coupled with Anti-Rab7 immunoprecipitation and immunofluorescence.
    Key findings: Akt1 silencing reduced infectious virions release to a degree comparable to that of ApoE, a host component involved in the HCV assembly and release, suggesting Akt1 was critical in the late stage of the HCV life cycle. Extracellular infectivity of HCV was inhibited by brefeldin A, and the inhibitory effect was augmented by Akt1 silencing and partially restored by ectopic Akt1 expression. Immunofluorescence revealed that Akt1 inhibition suppressed the interaction between HCV core protein and lipid droplet. Akt1 silencing impeded the transition of HCV from the endoplasmic reticulum to the endosome and hence inhibited the secretion of HCV infectious virions from the late endosome.
    Significance: Our study demonstrates that Akt1 has an impact on the lipogenesis pathway and plays a critical role in the assembly and secretion of infectious HCV.
    MeSH term(s) Humans ; Endoplasmic Reticulum/metabolism ; Endosomes ; Hepacivirus/metabolism ; Hepatitis C/genetics ; Proto-Oncogene Proteins c-akt/metabolism ; RNA, Small Interfering/metabolism ; Virion ; Virus Assembly/physiology
    Chemical Substances Proto-Oncogene Proteins c-akt (EC 2.7.11.1) ; RNA, Small Interfering
    Language English
    Publishing date 2024-01-06
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 3378-9
    ISSN 1879-0631 ; 0024-3205
    ISSN (online) 1879-0631
    ISSN 0024-3205
    DOI 10.1016/j.lfs.2024.122412
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Cessation of nucleos(t)ide analogues for patients with chronic hepatitis B in Taiwan: Risky but inevitable.

    Lee, I-Cheng / Huang, Yi-Hsiang

    Journal of the Chinese Medical Association : JCMA

    2020  Volume 83, Issue 6, Page(s) 515–516

    MeSH term(s) Hepatitis B Surface Antigens ; Hepatitis B e Antigens ; Hepatitis B, Chronic/drug therapy ; Humans ; Taiwan
    Chemical Substances Hepatitis B Surface Antigens ; Hepatitis B e Antigens
    Language English
    Publishing date 2020-03-30
    Publishing country Netherlands
    Document type Editorial ; Comment
    ZDB-ID 2107283-8
    ISSN 1728-7731 ; 1726-4901
    ISSN (online) 1728-7731
    ISSN 1726-4901
    DOI 10.1097/JCMA.0000000000000317
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: The alteration of fecal microbial and metabolic profile of gallstone patients in Taiwan: Single center study.

    Chang, Tien-En / Huang, Kuo-Hung / Luo, Jiing-Chyuan / Huang, Yi-Hsiang / Lin, Hung-Hsin / Fang, Wen-Liang / Hou, Ming-Chih

    Journal of the Chinese Medical Association : JCMA

    2024  

    Abstract: Background: Gallstone disease is a common health problem worldwide. The role of the gut microbiota in gallstone pathogenesis remains obscure. Our aim was to evaluate the association and crosstalk between gut microbiota, gut metabolomic, and metabolic ... ...

    Abstract Background: Gallstone disease is a common health problem worldwide. The role of the gut microbiota in gallstone pathogenesis remains obscure. Our aim was to evaluate the association and crosstalk between gut microbiota, gut metabolomic, and metabolic parameters in cholesterol gallstone (CS) patients, pigmented gallstone (PS) patients, and controls.
    Methods: We collected stool samples from healthy individuals and patients with gallstones in our hospital from March 2019 to February 2021. 16s rRNA sequencing was performed, followed by differential abundance analyses. Measurement of bile acids and short-chain fatty acids was conducted via targeted metabolomics.
    Result: Thirty healthy individuals and 20 gallstone patients were recruited. The intergroup difference of microbial composition was significant between control and gallstone patients. The control group had more abundant Faecalibacterium , Prevotella 9 and Bacteroides plebeius DSM 17135 . The CS group had higher Desulfovibrionaceae and Bacteroides uniformis than the other two groups, while the PS group had more abundant Escherichia-Shigella . In the analysis of metabolites, only n-butyric acid had a significantly higher concentration in the controls than in the gallstone group ( p < 0.01). The level of 3α-hydroxy-12 ketolithocholic acid, deoxycholic acid, and cholic acid showed no intergroup differences, but was correlated to the serum cholesterol level and bacterial richness and evenness.
    Conclusion: Our study revealed the key taxa that can discriminate between individuals with or without gallstones. We also identified metabolites that are possibly associated with metabolic parameter and bacterial diversity. However, the correlation of the metabolites to certain clusters of bacteria should be analyzed in a larger cohort.
    Language English
    Publishing date 2024-04-05
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2107283-8
    ISSN 1728-7731 ; 1726-4901
    ISSN (online) 1728-7731
    ISSN 1726-4901
    DOI 10.1097/JCMA.0000000000001094
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: To chew carefully and swallow slowly.

    Lee, Kuei-Chuan / Huang, Yi-Hsiang

    Journal of the Chinese Medical Association : JCMA

    2019  Volume 82, Issue 10, Page(s) 745

    MeSH term(s) Adult ; Foreign Bodies ; Humans ; Mastication ; Retrospective Studies ; Upper Gastrointestinal Tract
    Language English
    Publishing date 2019-11-04
    Publishing country Netherlands
    Document type Editorial ; Comment
    ZDB-ID 2107283-8
    ISSN 1728-7731 ; 1726-4901
    ISSN (online) 1728-7731
    ISSN 1726-4901
    DOI 10.1097/JCMA.0000000000000167
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: AXL and MET in Hepatocellular Carcinoma: A Systematic Literature Review.

    Hsu, Chih-Hung / Huang, Yi-Hsiang / Lin, Shi-Ming / Hsu, Chiun

    Liver cancer

    2022  Volume 11, Issue 2, Page(s) 94–112

    Abstract: Background: Multikinase inhibitors (MKIs) have been shown to improve survival in patients with hepatocellular carcinoma (HCC) compared with placebo. Distinct from other MKIs, cabozantinib has inhibitory activity for both AXL and MET. This review ... ...

    Abstract Background: Multikinase inhibitors (MKIs) have been shown to improve survival in patients with hepatocellular carcinoma (HCC) compared with placebo. Distinct from other MKIs, cabozantinib has inhibitory activity for both AXL and MET. This review considers the literature elucidating the role of AXL and MET in HCC progression, treatment resistance, and immunomodulation. A systematic search of the PubMed database was conducted on November 16, 2020, and identified a total of 174 search results. A further 36 potentially relevant articles were identified based on the authors' knowledge. After initial screening by title/abstract, 159 underwent full-text screening and we identified 69 original research articles reporting empirical data from in vitro or in vivo models of HCC evaluating the effects of manipulating AXL or MET signaling on tumorigenic behavior.
    Summary: AXL expression is highly correlated with HCC progression and outcomes and has been reported to be involved in transforming growth factor-β and the regulation of PI3K/AKT, ERK/MAPK, and CCN proteins. MET protein expression is increased in HCC with the highest histological grade and has been reported to be involved in the regulation of PI3K/AKT, PLCγ/DAG/PKC, and MAPK/ERK signaling. Both AXL and MET are key regulators of sorafenib resistance in HCC. In terms of immunomodulation, there are data to indicate that AXL and MET interact with the immune components of the tumor microenvironment and promote tumorigenesis and treatment resistance. In addition, AXL was found to play a potential role in the development of a protumorigenic neutrophil phenotype in HCC. Combined inhibition of MET and programmed cell death protein resulted in additive reduction of HCC cell growth.
    Key messages: AXL and MET play key roles in HCC progression, treatment resistance, and immunomodulation. Continued development of drugs that target these receptor tyrosine kinases appears likely to represent a useful strategy to improve outcomes for patients with HCC.
    Language English
    Publishing date 2022-02-10
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2666925-0
    ISSN 1664-5553 ; 2235-1795
    ISSN (online) 1664-5553
    ISSN 2235-1795
    DOI 10.1159/000520501
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Long-term outcomes in patients with chronic hepatitis C in the current era of direct-acting antiviral agents.

    Wei, Lai / Huang, Yi-Hsiang

    Expert review of anti-infective therapy

    2019  Volume 17, Issue 5, Page(s) 311–325

    Abstract: ... ...

    Abstract Introduction
    MeSH term(s) Antiviral Agents/administration & dosage ; Antiviral Agents/pharmacology ; Carcinoma, Hepatocellular/virology ; Disease Progression ; Hepatitis C, Chronic/drug therapy ; Hepatitis C, Chronic/virology ; Humans ; Liver Neoplasms/virology ; Treatment Outcome
    Chemical Substances Antiviral Agents
    Language English
    Publishing date 2019-04-30
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 2181279-2
    ISSN 1744-8336 ; 1478-7210
    ISSN (online) 1744-8336
    ISSN 1478-7210
    DOI 10.1080/14787210.2019.1588112
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Ser38-His93-Asn91 triad confers resistance of JFH1 HCV NS5A-Y93H variant to NS5A inhibitors.

    Lee, Wei-Ping / Tsai, Keng-Chang / Liao, Shi-Xian / Huang, Yi-Hsiang / Hou, Ming-Chih / Lan, Keng-Hsin

    The FEBS journal

    2024  Volume 291, Issue 6, Page(s) 1264–1274

    Abstract: HCV NS5A is a dimeric phosphoprotein involved in HCV replication. NS5A inhibitors are among direct-acting antivirals (DAA) for HCV therapy. The Y93H mutant of NS5A is resistant to NS5A inhibitors, but the precise mechanism remains unclear. In this report, ...

    Abstract HCV NS5A is a dimeric phosphoprotein involved in HCV replication. NS5A inhibitors are among direct-acting antivirals (DAA) for HCV therapy. The Y93H mutant of NS5A is resistant to NS5A inhibitors, but the precise mechanism remains unclear. In this report, we proposed a Ser38-His93-Asn91 triad to dissect the mechanism. Using pymol 1.3 software, the homology structure of JFH1 NS5A was determined based on the dimer structure of genotype 1b extracted from the database Protein DataBank (www.ebi.ac.uk/pdbsum) with codes 1ZH1 and 3FQM/3FQQ. FLAG-NS5A-WT failed to form dimer in the absence of nonstructural proteins from subgenomic replicon (NS3-5A); however, FLAG-NS5A-Y93H was able to form dimer without the aid of NS3-5A. The Ser38-His93-Asn91 triad in the dimer of the Y93H variant predicts a structural crash of the cleft receiving the NS5A inhibitor daclatasvir. The dimerization assay revealed that the existence of JFH1-NS5A-1ZH1 and -3FQM homology dimers depended on each other for existence and that both NS5A-WT 1ZH1 and 3FQM dimers cooperated to facilitate RNA replication. However, NS5A-Y93H 1ZH1 alone could form dimer and conduct RNA replication in the absence of the 3FQM structure. In conclusion, this study provides novel insight into the functional significance of the Ser38-His93-Asn91 triad in resistance of the Y93H variant to NS5A inhibitors.
    MeSH term(s) Humans ; Antiviral Agents/pharmacology ; Hepatitis C, Chronic/drug therapy ; Genotype ; Hepacivirus/genetics ; Viral Nonstructural Proteins/genetics ; Drug Resistance, Viral/genetics
    Chemical Substances Antiviral Agents ; Viral Nonstructural Proteins
    Language English
    Publishing date 2024-01-03
    Publishing country England
    Document type Journal Article
    ZDB-ID 2173655-8
    ISSN 1742-4658 ; 1742-464X
    ISSN (online) 1742-4658
    ISSN 1742-464X
    DOI 10.1111/febs.17039
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Ultrasound for ankle and foot pathologies in early rheumatoid arthritis.

    Huang, Yi-Hsiang / Chen, Yu-Han / Yong, Su Boon / Ma, Kevin Sheng-Kai

    International journal of rheumatic diseases

    2023  Volume 26, Issue 7, Page(s) 1388–1390

    MeSH term(s) Humans ; Ankle/diagnostic imaging ; Ankle Joint/diagnostic imaging ; Ankle Joint/pathology ; Arthritis, Rheumatoid/diagnostic imaging ; Arthritis, Rheumatoid/pathology ; Lower Extremity
    Language English
    Publishing date 2023-03-27
    Publishing country England
    Document type Letter ; Comment
    ZDB-ID 2426924-4
    ISSN 1756-185X ; 1756-1841
    ISSN (online) 1756-185X
    ISSN 1756-1841
    DOI 10.1111/1756-185X.14593
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: REPLY.

    Lee, Mei-Hsuan / Huang, Yi-Hsiang / Koshiol, Jill

    Hepatology (Baltimore, Md.)

    2021  Volume 74, Issue 5, Page(s) 2925–2926

    Language English
    Publishing date 2021-09-15
    Publishing country United States
    Document type Letter ; Comment
    ZDB-ID 604603-4
    ISSN 1527-3350 ; 0270-9139
    ISSN (online) 1527-3350
    ISSN 0270-9139
    DOI 10.1002/hep.32051
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Book ; Online: SynHIN

    Hong, Ming-Yi / Huang, Yi-Hsiang / Teng, You-Chen / Wang, Chih-Yu / Lin, Che

    Generating Synthetic Heterogeneous Information Network for Explainable AI

    2024  

    Abstract: Graph Neural Networks (GNNs) excel in various domains, from detecting e-commerce spam to social network classification problems. However, the lack of public graph datasets hampers research progress, particularly in heterogeneous information networks (HIN) ...

    Abstract Graph Neural Networks (GNNs) excel in various domains, from detecting e-commerce spam to social network classification problems. However, the lack of public graph datasets hampers research progress, particularly in heterogeneous information networks (HIN). The demand for datasets for fair HIN comparisons is growing due to advancements in GNN interpretation models. In response, we propose SynHIN, a unique method for generating synthetic heterogeneous information networks. SynHIN identifies motifs in real-world datasets, summarizes graph statistics, and constructs a synthetic network. Our approach utilizes In-Cluster and Out-Cluster Merge modules to build the synthetic HIN from primary motif clusters. After In/Our-Cluster mergers and a post-pruning process fitting the real dataset constraints, we ensure the synthetic graph statistics align closely with the reference one. SynHIN generates a synthetic heterogeneous graph dataset for node classification tasks, using the primary motif as the explanation ground truth. It can adapt and address the lack of heterogeneous graph datasets and motif ground truths, proving beneficial for assessing heterogeneous graph neural network explainers. We further present a benchmark dataset for future heterogeneous graph explainer model research. Our work marks a significant step towards explainable AI in HGNNs.
    Keywords Computer Science - Machine Learning ; Computer Science - Artificial Intelligence ; Computer Science - Social and Information Networks
    Subject code 006
    Publishing date 2024-01-06
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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