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  1. Article: Mechanism and management of atrial fibrillation in the patients with obstructive sleep apnea.

    Iwasaki, Yu-Ki

    Journal of arrhythmia

    2022  Volume 38, Issue 6, Page(s) 974–980

    Abstract: Obstructive sleep apnea (OSA) is a highly prevalent disorder in patients with atrial fibrillation (AF). Although there has been an increase in the incidence of AF due to the aging population, it has been reported that OSA is still underdiagnosed because ... ...

    Abstract Obstructive sleep apnea (OSA) is a highly prevalent disorder in patients with atrial fibrillation (AF). Although there has been an increase in the incidence of AF due to the aging population, it has been reported that OSA is still underdiagnosed because many patients remain asymptomatic or unaware of the symptoms associated with OSA, such as daytime sleepiness. Untreated OSA reduces the effectiveness of AF treatment, regardless of pharmacological or non-pharmacological modes of therapy, such as catheter ablation. Experimental and clinical studies have shown that OSA pathophysiology is multifactorial, comprising of hypoxemia, hypercapnia, autonomic dysfunction, negative intrathoracic pressure changes, and arousals of OSA, and lead to AF. Both the acute and long-term effects of obstructive apnea episodes are involved in the development of an arrhythmogenic substrate of AF. Undiagnosed OSA causes underutilized opportunities for more effective AF management. Therefore, it is important to screen for OSA in all patients being considered for rhythm control therapy. However, regardless of the growing evidence of the negative prognostic impact of OSA, there is a lack of awareness regarding this connection not only among patients but also among cardiologists and arrhythmia specialists. There is a barrier to performing a systemic screening for OSA in clinical practice. Therefore, it is important to establish a comprehensive OSA care team for the efficient diagnosis and treatment of OSA. This review provides the current understanding of OSA and its relationship to AF and the importance of the diagnosis and management of OSA in AF.
    Language English
    Publishing date 2022-09-27
    Publishing country Japan
    Document type Journal Article ; Review
    ZDB-ID 2696593-8
    ISSN 1883-2148 ; 1880-4276
    ISSN (online) 1883-2148
    ISSN 1880-4276
    DOI 10.1002/joa3.12784
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Simple LA Surgical Ablation or Perfect Biatrial Surgical Ablation: Eternal Theme?

    Iwasaki, Yu-Ki

    JACC. Asia

    2021  Volume 1, Issue 2, Page(s) 215–217

    Language English
    Publishing date 2021-09-21
    Publishing country United States
    Document type Editorial
    ISSN 2772-3747
    ISSN (online) 2772-3747
    DOI 10.1016/j.jacasi.2021.07.003
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Sinus Node Dysfunction due to Lithium Intoxication.

    Aizawa, Yoshiyasu / Iwasaki, Yu-Ki / Asai, Kuniya / Matsumoto, Takumi

    Internal medicine (Tokyo, Japan)

    2024  

    Language English
    Publishing date 2024-03-04
    Publishing country Japan
    Document type Journal Article
    ZDB-ID 32371-8
    ISSN 1349-7235 ; 0021-5120 ; 0918-2918
    ISSN (online) 1349-7235
    ISSN 0021-5120 ; 0918-2918
    DOI 10.2169/internalmedicine.3487-24
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Oligonucleotide usage in coronavirus genomes mimics that in exon regions in host genomes

    Iwasaki, Yuki / Abe, Takashi / Ikemura, Toshimichi

    Virol J. 2023 Dec., v. 20, no. 1 p.39-39

    2023  

    Abstract: BACKGROUND: Viruses use various host factors for their growth, and efficient growth requires efficient use of these factors. Our previous study revealed that the occurrence frequency of oligonucleotides in the influenza virus genome is distinctly ... ...

    Abstract BACKGROUND: Viruses use various host factors for their growth, and efficient growth requires efficient use of these factors. Our previous study revealed that the occurrence frequency of oligonucleotides in the influenza virus genome is distinctly different among derived hosts, and the frequency tends to adapt to the host cells in which they grow. We aimed to study the adaptation mechanisms of a zoonotic virus to host cells. METHODS: Herein, we compared the frequency of oligonucleotides in the genome of alpha- and betacoronavirus with those in the genomes of humans and bats, which are typical hosts of the viruses. RESULTS: By comparing the oligonucleotide frequency in coronaviruses and their host genomes, we found a statistically tested positive correlation between the frequency of coronaviruses and that of the exon regions of the host from which the virus is derived. To examine the characteristics of early-stage changes in the viral genome, which are assumed to accompany the host change from non-humans to humans, we compared the oligonucleotide frequency between severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) at the beginning of the pandemic and the prevalent variants thereafter, and found changes towards the frequency of the host exon regions. CONCLUSIONS: In alpha- and betacoronaviruses, the genome oligonucleotide frequency is thought to change in response to the cellular environment in which the virus is replicating, and actually the frequency has approached the frequency in exon regions in the host.
    Keywords Orthomyxoviridae ; Severe acute respiratory syndrome coronavirus 2 ; exons ; oligonucleotides ; pandemic ; viral genome ; viruses
    Language English
    Dates of publication 2023-12
    Size p. 39.
    Publishing place BioMed Central
    Document type Article ; Online
    ZDB-ID 2160640-7
    ISSN 1743-422X
    ISSN 1743-422X
    DOI 10.1186/s12985-023-01995-3
    Database NAL-Catalogue (AGRICOLA)

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  5. Article: Exploring Acetogenesis in Firmicutes: From Phylogenetic Analysis to Solid Medium Cultivation with Solid-Phase Electrochemical Isolation Equipments.

    Kimura, Zen-Ichiro / Kuriyama, Hiroki / Iwasaki, Yuki

    Microorganisms

    2023  Volume 11, Issue 12

    Abstract: This study introduces a groundbreaking approach for the exploration and utilization of electrotrophic acetogens, essential for advancing microbial electrosynthesis systems (MES). Our initial focus was the development of Solid-Phase Electrochemical ... ...

    Abstract This study introduces a groundbreaking approach for the exploration and utilization of electrotrophic acetogens, essential for advancing microbial electrosynthesis systems (MES). Our initial focus was the development of Solid-Phase Electrochemical Isolation Equipment (SPECIEs), a novel cultivation method for isolating electrotrophic acetogens directly from environmental samples on a solid medium. SPECIEs uses electrotrophy as a selection pressure, successfully overcoming the traditional cultivation method limitations and enabling the cultivation of diverse microbial communities with enhanced specificity towards acetogens. Following the establishment of SPECIEs, we conducted a genome-based phylogenetic analysis using the Genome Taxonomy Database (GTDB) to identify potential electrotrophic acetogens within the Firmicutes phylum and its related lineages. Subsequently, we validated the electrotrophic capabilities of selected strains under electrode-oxidizing conditions in a liquid medium. This sequential approach, integrating innovative cultivation techniques with detailed phylogenetic analysis, paves the way for further advances in microbial cultivation and the identification of new biocatalysts for sustainable energy applications.
    Language English
    Publishing date 2023-12-13
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2720891-6
    ISSN 2076-2607
    ISSN 2076-2607
    DOI 10.3390/microorganisms11122976
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Oligonucleotide usage in coronavirus genomes mimics that in exon regions in host genomes.

    Iwasaki, Yuki / Abe, Takashi / Ikemura, Toshimichi

    Virology journal

    2023  Volume 20, Issue 1, Page(s) 39

    Abstract: Background: Viruses use various host factors for their growth, and efficient growth requires efficient use of these factors. Our previous study revealed that the occurrence frequency of oligonucleotides in the influenza virus genome is distinctly ... ...

    Abstract Background: Viruses use various host factors for their growth, and efficient growth requires efficient use of these factors. Our previous study revealed that the occurrence frequency of oligonucleotides in the influenza virus genome is distinctly different among derived hosts, and the frequency tends to adapt to the host cells in which they grow. We aimed to study the adaptation mechanisms of a zoonotic virus to host cells.
    Methods: Herein, we compared the frequency of oligonucleotides in the genome of alpha- and betacoronavirus with those in the genomes of humans and bats, which are typical hosts of the viruses.
    Results: By comparing the oligonucleotide frequency in coronaviruses and their host genomes, we found a statistically tested positive correlation between the frequency of coronaviruses and that of the exon regions of the host from which the virus is derived. To examine the characteristics of early-stage changes in the viral genome, which are assumed to accompany the host change from non-humans to humans, we compared the oligonucleotide frequency between severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) at the beginning of the pandemic and the prevalent variants thereafter, and found changes towards the frequency of the host exon regions.
    Conclusions: In alpha- and betacoronaviruses, the genome oligonucleotide frequency is thought to change in response to the cellular environment in which the virus is replicating, and actually the frequency has approached the frequency in exon regions in the host.
    MeSH term(s) Animals ; COVID-19 ; SARS-CoV-2 ; Exons ; Genome, Viral ; Chiroptera ; Oligonucleotides
    Chemical Substances Oligonucleotides
    Language English
    Publishing date 2023-03-01
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2160640-7
    ISSN 1743-422X ; 1743-422X
    ISSN (online) 1743-422X
    ISSN 1743-422X
    DOI 10.1186/s12985-023-01995-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Pericardial-oesophageal fistula after ablation for atrial fibrillation.

    Fujimoto, Yuhi / Iwasaki, Yu-Ki / Asai, Kuniya

    Lancet (London, England)

    2023  Volume 402, Issue 10405, Page(s) 882

    MeSH term(s) Humans ; Atrial Fibrillation/surgery ; Esophageal Fistula
    Language English
    Publishing date 2023-09-10
    Publishing country England
    Document type Case Reports ; Journal Article
    ZDB-ID 3306-6
    ISSN 1474-547X ; 0023-7507 ; 0140-6736
    ISSN (online) 1474-547X
    ISSN 0023-7507 ; 0140-6736
    DOI 10.1016/S0140-6736(23)01675-6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: JCS/JHRS Guideline: Rivaroxaban Not Recommended for Patients With Nonvalvular Atrial Fibrillation and High Bleeding Risk - Reply.

    Ono, Katsushige / Iwasaki, Yu-Ki / Shimizu, Wataru

    Circulation journal : official journal of the Japanese Circulation Society

    2022  Volume 86, Issue 7, Page(s) 1205

    MeSH term(s) Anticoagulants/adverse effects ; Atrial Fibrillation/complications ; Atrial Fibrillation/drug therapy ; Factor Xa Inhibitors/adverse effects ; Hemorrhage/chemically induced ; Humans ; Retrospective Studies ; Rivaroxaban/adverse effects ; Stroke/etiology ; Stroke/prevention & control ; Treatment Outcome
    Chemical Substances Anticoagulants ; Factor Xa Inhibitors ; Rivaroxaban (9NDF7JZ4M3)
    Language English
    Publishing date 2022-05-27
    Publishing country Japan
    Document type Letter ; Comment
    ZDB-ID 2068090-9
    ISSN 1347-4820 ; 1346-9843
    ISSN (online) 1347-4820
    ISSN 1346-9843
    DOI 10.1253/circj.CJ-22-0285
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Prediction and Detection of Atrial Fibrillation After Catheter Ablation.

    Iwasaki, Yu-Ki / Shimizu, Wataru

    Circulation journal : official journal of the Japanese Circulation Society

    2020  Volume 84, Issue 6, Page(s) 883–884

    MeSH term(s) Atrial Fibrillation/diagnosis ; Atrial Fibrillation/surgery ; Atrial Premature Complexes ; Catheter Ablation ; Humans
    Language English
    Publishing date 2020-04-17
    Publishing country Japan
    Document type Editorial ; Comment
    ZDB-ID 2068090-9
    ISSN 1347-4820 ; 1346-9843
    ISSN (online) 1347-4820
    ISSN 1346-9843
    DOI 10.1253/circj.CJ-20-0255
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: AI-based search for convergently expanding, advantageous mutations in SARS-CoV-2 by focusing on oligonucleotide frequencies.

    Ikemura, Toshimichi / Iwasaki, Yuki / Wada, Kennosuke / Wada, Yoshiko / Abe, Takashi

    PloS one

    2022  Volume 17, Issue 8, Page(s) e0273860

    Abstract: Among mutations that occur in SARS-CoV-2, efficient identification of mutations advantageous for viral replication and transmission is important to characterize and defeat this rampant virus. Mutations rapidly expanding frequency in a viral population ... ...

    Abstract Among mutations that occur in SARS-CoV-2, efficient identification of mutations advantageous for viral replication and transmission is important to characterize and defeat this rampant virus. Mutations rapidly expanding frequency in a viral population are candidates for advantageous mutations, but neutral mutations hitchhiking with advantageous mutations are also likely to be included. To distinguish these, we focus on mutations that appear to occur independently in different lineages and expand in frequency in a convergent evolutionary manner. Batch-learning SOM (BLSOM) can separate SARS-CoV-2 genome sequences according by lineage from only providing the oligonucleotide composition. Focusing on remarkably expanding 20-mers, each of which is only represented by one copy in the viral genome, allows us to correlate the expanding 20-mers to mutations. Using visualization functions in BLSOM, we can efficiently identify mutations that have expanded remarkably both in the Omicron lineage, which is phylogenetically distinct from other lineages, and in other lineages. Most of these mutations involved changes in amino acids, but there were a few that did not, such as an intergenic mutation.
    MeSH term(s) Artificial Intelligence ; COVID-19/genetics ; Genome, Viral ; Humans ; Machine Learning ; Mutation ; Oligonucleotides/genetics ; Phylogeny ; SARS-CoV-2/genetics ; Spike Glycoprotein, Coronavirus/genetics
    Chemical Substances Oligonucleotides ; Spike Glycoprotein, Coronavirus ; spike protein, SARS-CoV-2
    Language English
    Publishing date 2022-08-31
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0273860
    Database MEDical Literature Analysis and Retrieval System OnLINE

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