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  1. Article ; Online: The evolution of hemocyanin genes in Tectipleura: a multitude of conserved introns in highly diverse gastropods.

    Schäfer, Gabriela Giannina / Pedrini-Martha, Veronika / Jackson, Daniel John / Dallinger, Reinhard / Lieb, Bernhard

    BMC ecology and evolution

    2021  Volume 21, Issue 1, Page(s) 36

    Abstract: Background: Hemocyanin is the oxygen transporter of most molluscs. Since the oxygen affinity of hemocyanin is strongly temperature-dependent, this essential protein needs to be well-adapted to the environment. In Tectipleura, a very diverse group of ... ...

    Abstract Background: Hemocyanin is the oxygen transporter of most molluscs. Since the oxygen affinity of hemocyanin is strongly temperature-dependent, this essential protein needs to be well-adapted to the environment. In Tectipleura, a very diverse group of gastropods with > 27,000 species living in all kinds of habitats, several hemocyanin genes have already been analyzed. Multiple independent duplications of this gene have been identified and may represent potential adaptations to different environments and lifestyles. The aim of this study is to further explore the evolution of these genes by analyzing their exon-intron architectures.
    Results: We have reconstructed the gene architectures of ten hemocyanin genes from four Tectipleura species: Aplysia californica, Lymnaea stagnalis, Cornu aspersum and Helix pomatia. Their hemocyanin genes each contain 53 introns, significantly more than in the hemocyanin genes of Cephalopoda (9-11), Vetigastropoda (15) and Caenogastropoda (28-33). The gene structures of Tectipleura hemocyanins are identical in terms of intron number and location, with the exception of one out of two hemocyanin genes of L. stagnalis that comprises one additional intron. We found that gene structures that differ between molluscan lineages most probably evolved more recently through independent intron gains.
    Conclusions: The strict conservation of the large number of introns in Tectipleura hemocyanin genes over 200 million years suggests the influence of a selective pressure on this gene structure. While we could not identify conserved sequence motifs within these introns, it may be simply the great number of introns that offers increased possibilities of gene regulation relative to hemocyanin genes with less introns and thus may have facilitated habitat shifts and speciation events. This hypothesis is supported by the relatively high number of introns within the hemocyanin genes of Pomacea canaliculata that has evolved independently of the Tectipleura. Pomacea canaliculata belongs to the Caenogastropoda, the sister group of Heterobranchia (that encompass Tectipleura) which is also very diverse and comprises species living in different habitats. Our findings provide a hint to some of the molecular mechanisms that may have supported the spectacular radiation of one of Metazoa's most species rich groups.
    MeSH term(s) Animals ; Evolution, Molecular ; Gastropoda/genetics ; Hemocyanins/genetics ; Introns/genetics ; Mollusca/genetics
    Chemical Substances Hemocyanins (9013-72-3)
    Language English
    Publishing date 2021-03-04
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 2730-7182
    ISSN (online) 2730-7182
    DOI 10.1186/s12862-021-01763-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Book ; Online ; Thesis: Pigments, Colours and Patterns - The contribution of eumelanin and pheomelanin to molluscan shell ornamentation with a special focus on the terrestrial snail Cepaea nemoralis

    Affenzeller, Susanne [Verfasser] / Jackson, Daniel John [Akademischer Betreuer] / Jackson, Daniel John [Gutachter] / Bucher, Gregor [Gutachter]

    2020  

    Author's details Susanne Affenzeller ; Gutachter: Daniel John Jackson, Gregor Bucher ; Betreuer: Daniel John Jackson
    Keywords Geowissenschaften ; Earth Sciences
    Subject code sg550
    Language English
    Publisher Niedersächsische Staats- und Universitätsbibliothek Göttingen
    Publishing place Göttingen
    Document type Book ; Online ; Thesis
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  3. Article ; Online: Identification and validation of reference genes for qPCR in the terrestrial gastropod Cepaea nemoralis.

    Affenzeller, Susanne / Cerveau, Nicolas / Jackson, Daniel John

    PloS one

    2018  Volume 13, Issue 8, Page(s) e0201396

    Abstract: Identifying and understanding mechanisms that generate phenotypic diversity is a fundamental goal of evolutionary biology. With a diversity of pigmented shell morphotypes governed by Mendelian patterns of inheritance, the common grove snail Cepaea ... ...

    Abstract Identifying and understanding mechanisms that generate phenotypic diversity is a fundamental goal of evolutionary biology. With a diversity of pigmented shell morphotypes governed by Mendelian patterns of inheritance, the common grove snail Cepaea nemoralis (Linnaeus, 1758) has been a model for evolutionary biologists and population geneticists for decades. However, the genetic mechanisms by which C. nemoralis generates this pigmented shell diversity remain unknown. An important first step in investigating this pigmentation pattern is to establish a set of validated reference genes for differential gene expression assays. Here we have evaluated eleven candidate genes for reverse transcription quantitative polymerase chain reaction (qPCR) in C. nemoralis. Five of these were housekeeping genes traditionally employed as qPCR reference genes in other species, while six alternative genes were selected de novo from C. nemoralis transcriptome data based on the stability of their expression levels. We tested all eleven candidates for expression stability in four sub-adult tissues of C. nemoralis: pigmented mantle, unpigmented mantle, head and foot. We find that two commonly employed housekeeping genes (alpha tubulin, glyceraldehyde 3-phosphate dehydrogenase) are unsuitable for use as qPCR reference genes in C. nemoralis. The traditional housekeeping gene UBIquitin on the other hand performed very well. Additionally, an RNA-directed DNA polymerase (RNAP), a Potassium Channel Protein (KCHP) and a Prenylated Rab acceptor protein 1 (PRAP), identified de novo from transcriptomic data, were the most stably expressed genes in different tissue combinations. We also tested expression stability over two seasons and found that, although other genes are more stable within a single season, beta actin (BACT) and elongation factor 1 alpha (EF1α) were the most reliable reference genes across seasons.
    MeSH term(s) Animals ; Gastropoda/genetics ; Gastropoda/metabolism ; Gene Expression Regulation ; Genes ; Real-Time Polymerase Chain Reaction ; Reverse Transcriptase Polymerase Chain Reaction
    Language English
    Publishing date 2018-08-29
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Validation Studies
    ISSN 1932-6203
    ISSN (online) 1932-6203
    DOI 10.1371/journal.pone.0201396
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Characterization of the pigmented shell-forming proteome of the common grove snail Cepaea nemoralis.

    Mann, Karlheinz / Jackson, Daniel John

    BMC genomics

    2014  Volume 15, Page(s) 249

    Abstract: Background: With a diversity of pigmented shell morphotypes governed by Mendelian patterns of inheritance, the common grove snail, Cepaea nemoralis, has served as a model for evolutionary biologists and population geneticists for decades. Surprisingly, ... ...

    Abstract Background: With a diversity of pigmented shell morphotypes governed by Mendelian patterns of inheritance, the common grove snail, Cepaea nemoralis, has served as a model for evolutionary biologists and population geneticists for decades. Surprisingly, the molecular mechanisms by which C. nemoralis generates this pigmented shelled diversity, and the degree of evolutionary conservation present between molluscan shell-forming proteomes, remain unknown.
    Results: Here, using next generation sequencing and high throughput proteomics, we identify and characterize the major proteinaceous components of the C. nemoralis shell, the first shell-proteome for a pulmonate mollusc. The recent availability of several marine molluscan shell-proteomes, and the dataset we report here, allow us to identify 59 evolutionarily conserved and novel shell-forming proteins. While the C. nemoralis dataset is dominated by proteins that share little to no similarity with proteins in public databases, almost half of it shares similarity with proteins present in other molluscan shells. In addition, we could not find any indication that a protein (or class of proteins) is directly associated with shell pigmentation in C. nemoralis. This is in contrast to the only other partially characterized molluscan-shell pigmentation mechanism employed by the tropical abalone Haliotis asinina.
    Conclusions: The unique pulmonate shell-forming proteome that we report here reveals an abundance of both mollusc-specific and pulmonate-specific proteins, suggesting that novel coding sequences, and/or the extensive divergence of these sequences from ancestral sequences, supported the innovation of new shell types within the Conchifera. In addition, we report here the first evidence that molluscs use independently evolved mechanisms to pigment their shells. This proteome provides a solid foundation from which further studies aimed at the functional characterization of these shell-forming proteins can be conducted.
    MeSH term(s) Animal Shells/metabolism ; Animals ; Base Sequence ; Computational Biology/methods ; Gastropoda/classification ; Gastropoda/genetics ; Gastropoda/metabolism ; Molecular Sequence Data ; Peptides/chemistry ; Peptides/genetics ; Peptides/metabolism ; Phylogeny ; Pigmentation/genetics ; Proteins/chemistry ; Proteins/metabolism ; Proteome ; Proteomics/methods ; Reproducibility of Results
    Chemical Substances Peptides ; Proteins ; Proteome
    Language English
    Publishing date 2014-03-31
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2041499-7
    ISSN 1471-2164 ; 1471-2164
    ISSN (online) 1471-2164
    ISSN 1471-2164
    DOI 10.1186/1471-2164-15-249
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  5. Book ; Online ; Thesis: Molecular characterisation of biomineralising genes in the freshwater pond snail Lymnaea stagnalis

    Herlitze, Ines [Verfasser] / Jackson, Daniel John [Akademischer Betreuer] / Jackson, Daniel John [Gutachter] / Marin, Frédéric [Gutachter]

    2018  

    Author's details Ines Herlitze ; Gutachter: Daniel John Jackson, Frédéric Marin ; Betreuer: Daniel John Jackson
    Keywords Geowissenschaften ; Earth Sciences
    Subject code sg550
    Language English
    Publisher Niedersächsische Staats- und Universitätsbibliothek Göttingen
    Publishing place Göttingen
    Document type Book ; Online ; Thesis
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  6. Article ; Online: An optimised whole mount in situ hybridisation protocol for the mollusc Lymnaea stagnalis.

    Hohagen, Jennifer / Herlitze, Ines / Jackson, Daniel John

    BMC developmental biology

    2015  Volume 15, Page(s) 19

    Abstract: Background: The ability to visualise the expression of individual genes in situ is an invaluable tool for developmental and evolutionary biologists; it allows for the characterisation of gene function, gene regulation and through inter-specific ... ...

    Abstract Background: The ability to visualise the expression of individual genes in situ is an invaluable tool for developmental and evolutionary biologists; it allows for the characterisation of gene function, gene regulation and through inter-specific comparisons, the evolutionary history of unique morphological features. For well-established model organisms (e.g., flies, worms, sea urchins) this technique has been optimised to an extent where it can be automated for high-throughput analyses. While the overall concept of in situ hybridisation is simple (hybridise a single-stranded, labelled nucleic acid probe complementary to a target of interest, and then detect the label immunologically using colorimetric or fluorescent methods), there are many parameters in the technique that can significantly affect the final result. Furthermore, due to variation in the biochemical and biophysical properties of different cells and tissues, an in situ technique optimised for one species is often not suitable for another, and often varies depending on the ontogenetic stage within a species.
    Results: Using a variety of pre-hybridisation treatments we have identified a set of treatments that greatly increases both whole mount in situ hybridisation (WMISH) signal intensity and consistency while maintaining morphological integrity for early larval stages of Lymnaea stagnalis. These treatments function well for a set of genes with presumably significantly different levels of expression (beta tubulin, engrailed and COE) and for colorimetric as well as fluorescent WMISH. We also identify a tissue-specific background stain in the larval shell field of L. stagnalis and a treatment, which eliminates this signal.
    Conclusions: This method that we present here will be of value to investigators employing L. stagnalis as a model for a variety of research themes (e.g. evolutionary biology, developmental biology, neurobiology, ecotoxicology), and brings a valuable tool to a species in a much understudied clade of animals collectively known as the Spiralia.
    MeSH term(s) Animals ; Gene Expression Regulation, Developmental ; In Situ Hybridization ; Lymnaea/embryology ; Lymnaea/genetics
    Language English
    Publishing date 2015-03-28
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 1471-213X
    ISSN (online) 1471-213X
    DOI 10.1186/s12861-015-0068-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Book ; Online ; Thesis: Insights into the Holobiont of the Early Branching Metazoan Vaceletia sp. and its Biomineralization Stragety

    Germer, Juliane [Verfasser] / Jackson, Daniel John [Akademischer Betreuer] / Jackson, Daniel John [Gutachter] / Reitner, Joachim [Gutachter]

    2017  

    Author's details Juliane Germer ; Gutachter: Daniel John Jackson, Joachim Reitner ; Betreuer: Daniel John Jackson
    Keywords Geowissenschaften ; Earth Sciences
    Subject code sg550
    Language English
    Publisher Niedersächsische Staats- und Universitätsbibliothek Göttingen
    Publishing place Göttingen
    Document type Book ; Online ; Thesis
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  8. Article ; Online: Hemocyanin genes as indicators of habitat shifts in Panpulmonata?

    Schäfer, Gabriela Giannina / Pedrini-Martha, Veronika / Schnegg, Raimund / Dallinger, Reinhard / Jackson, Daniel John / Lieb, Bernhard

    Molecular phylogenetics and evolution

    2018  Volume 130, Page(s) 99–103

    Abstract: Hemocyanin is the primary respiratory protein for the majority of the Mollusca and therefore directly interfaces with the physiological requirements of each species and the environments to which they are adapted. Hemocyanin is therefore likely to have ... ...

    Abstract Hemocyanin is the primary respiratory protein for the majority of the Mollusca and therefore directly interfaces with the physiological requirements of each species and the environments to which they are adapted. Hemocyanin is therefore likely to have been evolutionarily imprinted by significant habitat shifts. In the gastropod clade Panpulmonata (>30,000 species) major realm transitions have occurred multiple times independently and may have contributed to the diversification of this group. Yet, little is known about the adaptive changes linked to these habitat shifts. In order to gain deeper insight into the evolution of panpulmonate hemocyanins and to infer possible impacts associated with those scenarios, we have assembled and analysed hemocyanin isoforms from 4 panpulmonate species: (i) Helix pomatia, (ii) Cantareus aspersus (both Helicidae, Stylommatophora), (iii) Arion vulgaris (Arionidae, Stylommatophora) and (iv) Lymnaea stagnalis (Lymnaeidae, Hygrophila). Additionally, we describe a new hemocyanin isoform within the genome of the euopisthobranch Aplysia californica. Using these newly acquired hemocyanin data, we performed a phylogenetic analysis that reveals independent duplication events of hemocyanin within lineages that correlate with significant habitat shifts.
    MeSH term(s) Animals ; Ecosystem ; Gastropoda/genetics ; Gastropoda/physiology ; Genome/genetics ; Hemocyanins/genetics ; Phylogeny ; Protein Isoforms/genetics ; Species Specificity
    Chemical Substances Protein Isoforms ; Hemocyanins (9013-72-3)
    Language English
    Publishing date 2018-10-13
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 33610-5
    ISSN 1095-9513 ; 1055-7903
    ISSN (online) 1095-9513
    ISSN 1055-7903
    DOI 10.1016/j.ympev.2018.10.014
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  9. Article ; Online: The Skeleton Forming Proteome of an Early Branching Metazoan: A Molecular Survey of the Biomineralization Components Employed by the Coralline Sponge Vaceletia Sp.

    Germer, Juliane / Mann, Karlheinz / Wörheide, Gert / Jackson, Daniel John

    PloS one

    2015  Volume 10, Issue 11, Page(s) e0140100

    Abstract: The ability to construct a mineralized skeleton was a major innovation for the Metazoa during their evolution in the late Precambrian/early Cambrian. Porifera (sponges) hold an informative position for efforts aimed at unraveling the origins of this ... ...

    Abstract The ability to construct a mineralized skeleton was a major innovation for the Metazoa during their evolution in the late Precambrian/early Cambrian. Porifera (sponges) hold an informative position for efforts aimed at unraveling the origins of this ability because they are widely regarded to be the earliest branching metazoans, and are among the first multi-cellular animals to display the ability to biomineralize in the fossil record. Very few biomineralization associated proteins have been identified in sponges so far, with no transcriptome or proteome scale surveys yet available. In order to understand what genetic repertoire may have been present in the last common ancestor of the Metazoa (LCAM), and that may have contributed to the evolution of the ability to biocalcify, we have studied the skeletal proteome of the coralline demosponge Vaceletia sp. and compare this to other metazoan biomineralizing proteomes. We bring some spatial resolution to this analysis by dividing Vaceletia's aragonitic calcium carbonate skeleton into "head" and "stalk" regions. With our approach we were able to identify 40 proteins from both the head and stalk regions, with many of these sharing some similarity to previously identified gene products from other organisms. Among these proteins are known biomineralization compounds, such as carbonic anhydrase, spherulin, extracellular matrix proteins and very acidic proteins. This report provides the first proteome scale analysis of a calcified poriferan skeletal proteome, and its composition clearly demonstrates that the LCAM contributed several key enzymes and matrix proteins to its descendants that supported the metazoan ability to biocalcify. However, lineage specific evolution is also likely to have contributed significantly to the ability of disparate metazoan lineages to biocalcify.
    MeSH term(s) Animals ; Biological Evolution ; Calcification, Physiologic/physiology ; Calcium Carbonate/metabolism ; Carbonic Anhydrases/metabolism ; Chromatography, High Pressure Liquid ; Coccidioidin/classification ; Coccidioidin/metabolism ; Extracellular Matrix Proteins/metabolism ; Mass Spectrometry ; Phylogeny ; Porifera/genetics ; Porifera/metabolism ; Proteome/analysis ; Proteome/metabolism ; Skeleton/metabolism ; Transcriptome
    Chemical Substances Extracellular Matrix Proteins ; Proteome ; spherulin ; Coccidioidin (12622-73-0) ; Carbonic Anhydrases (EC 4.2.1.1) ; Calcium Carbonate (H0G9379FGK)
    Language English
    Publishing date 2015-11-04
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0140100
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  10. Book ; Online ; Thesis: Development of Transgenic Sterile Insect Technique Strains for the Invasive Fruit Pest Drosophila suzukii

    Ahmed, Hassan Mutasim Mohammed [Verfasser] / Wimmer, Ernst A. [Akademischer Betreuer] / Wimmer, Ernst A. [Gutachter] / Bucher, Gregor [Gutachter] / Schuh, Reinhard [Gutachter] / Heinrich, Ralf [Gutachter] / Jackson, Daniel John [Gutachter] / Dosch, Roland [Gutachter]

    2020  

    Author's details Hassan Mutasim Mohammed Ahmed ; Gutachter: Ernst A. Wimmer, Gregor Bucher, Reinhard Schuh, Ralf Heinrich, Daniel John Jackson, Roland Dosch ; Betreuer: Ernst A. Wimmer
    Keywords Biowissenschaften, Biologie ; Life Science, Biology
    Subject code sg570
    Language English
    Publisher Niedersächsische Staats- und Universitätsbibliothek Göttingen
    Publishing place Göttingen
    Document type Book ; Online ; Thesis
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