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  1. Article: Cell-Intrinsic Roles for Autophagy in Modulating CD4 T Cell Functions.

    Jacquin, Elise / Apetoh, Lionel

    Frontiers in immunology

    2018  Volume 9, Page(s) 1023

    Abstract: The catabolic process of autophagy plays important functions in inflammatory and immune responses by modulating innate immunity and adaptive immunity. Over the last decade, a cell-intrinsic role for autophagy in modulating CD4 T cell functions and ... ...

    Abstract The catabolic process of autophagy plays important functions in inflammatory and immune responses by modulating innate immunity and adaptive immunity. Over the last decade, a cell-intrinsic role for autophagy in modulating CD4 T cell functions and differentiation was revealed. After the initial observation of autophagosomes in effector CD4 T cells, further work has shown that not only autophagy levels are modulated in CD4 T cells in response to environmental signals but also that autophagy critically affects the biology of these cells. Mouse models of autophagy deletion in CD4 T cells have indeed shown that autophagy is essential for CD4 T cell survival and homeostasis in peripheral lymphoid organs. Furthermore, autophagy is required for CD4 T cell proliferation and cytokine production in response to T cell receptor activation. Recent developments have uncovered that autophagy controls CD4 T cell differentiation and functions. While autophagy is required for the maintenance of immunosuppressive functions of regulatory T cells, it restrains the differentiation of T
    MeSH term(s) Animals ; Autophagosomes ; Autophagy/immunology ; CD4-Positive T-Lymphocytes/immunology ; Cell Differentiation/immunology ; Cell Proliferation ; Clinical Trials as Topic ; Cytokines/immunology ; Humans ; Immunity, Innate ; Inflammation/therapy ; Lymphocyte Activation/immunology ; Mice ; Neoplasms/therapy ; T-Lymphocytes, Regulatory/immunology
    Chemical Substances Cytokines
    Language English
    Publishing date 2018-05-09
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 2606827-8
    ISSN 1664-3224
    ISSN 1664-3224
    DOI 10.3389/fimmu.2018.01023
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Imaging Noncanonical Autophagy and LC3-Associated Phagocytosis in Cultured Cells.

    Jacquin, Elise / Fletcher, Katherine / Florey, Oliver

    Methods in molecular biology (Clifton, N.J.)

    2019  Volume 1880, Page(s) 295–303

    Abstract: Monitoring of ATG8 proteins by western blotting and immunofluorescence microscopy are the most common methods to monitor the autophagy pathway. However, it has recently been shown that ATG8 proteins can be lipidated to non-autophagosome, single-membrane ... ...

    Abstract Monitoring of ATG8 proteins by western blotting and immunofluorescence microscopy are the most common methods to monitor the autophagy pathway. However, it has recently been shown that ATG8 proteins can be lipidated to non-autophagosome, single-membrane compartments through a noncanonical autophagy pathway. This is commonly found to occur during macro-endocytic processes such as phagocytosis, where it has been termed LC3-associated phagocytosis, and upon lysosomotropic drug treatment. Therefore, care is required when interpreting data based on ATG8 in order to conclude whether a signal relates to the canonical or noncanonical pathway. Here we provide methods to monitor noncanonical autophagy through fluorescence microscopy.
    MeSH term(s) Animals ; Autophagy ; Autophagy-Related Protein 8 Family/analysis ; Bone Marrow Cells/cytology ; Cell Culture Techniques/methods ; Cell Line ; Cell Separation/methods ; Cells, Cultured ; HCT116 Cells ; Humans ; Macrophages/cytology ; Mice ; Microscopy, Confocal/methods ; Microscopy, Fluorescence/methods ; Microtubule-Associated Proteins/analysis ; Optical Imaging/methods ; Phagocytosis
    Chemical Substances Autophagy-Related Protein 8 Family ; MAP1LC3A protein, human ; Map1lc3b protein, mouse ; Microtubule-Associated Proteins
    Language English
    Publishing date 2019-01-04
    Publishing country United States
    Document type Journal Article
    ISSN 1940-6029
    ISSN (online) 1940-6029
    DOI 10.1007/978-1-4939-8873-0_19
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Selective autophagy restricts IL-9 secretion from T

    Benoit-Lizon, Isis / Jacquin, Elise / Apetoh, Lionel

    Cell cycle (Georgetown, Tex.)

    2018  Volume 17, Issue 4, Page(s) 391–392

    MeSH term(s) Autophagy ; Cell Differentiation ; Humans ; Interleukin-9 ; Neoplasms ; T-Lymphocytes, Helper-Inducer
    Chemical Substances Interleukin-9
    Language English
    Publishing date 2018-01-15
    Publishing country United States
    Document type Editorial ; Research Support, Non-U.S. Gov't ; Comment
    ZDB-ID 2146183-1
    ISSN 1551-4005 ; 1538-4101 ; 1554-8627
    ISSN (online) 1551-4005
    ISSN 1538-4101 ; 1554-8627
    DOI 10.1080/15384101.2017.1414680
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: V-ATPase is a universal regulator of LC3-associated phagocytosis and non-canonical autophagy.

    Hooper, Kirsty M / Jacquin, Elise / Li, Taoyingnan / Goodwin, Jonathan M / Brumell, John H / Durgan, Joanne / Florey, Oliver

    The Journal of cell biology

    2022  Volume 221, Issue 6

    Abstract: Non-canonical autophagy is a key cellular pathway in immunity, cancer, and neurodegeneration, characterized by conjugation of ATG8 to endolysosomal single membranes (CASM). CASM is activated by engulfment (endocytosis, phagocytosis), agonists (STING, ... ...

    Abstract Non-canonical autophagy is a key cellular pathway in immunity, cancer, and neurodegeneration, characterized by conjugation of ATG8 to endolysosomal single membranes (CASM). CASM is activated by engulfment (endocytosis, phagocytosis), agonists (STING, TRPML1), and infection (influenza), dependent on K490 in the ATG16L1 WD40-domain. However, factors associated with non-canonical ATG16L1 recruitment and CASM induction remain unknown. Here, using pharmacological inhibitors, we investigate a role for V-ATPase during non-canonical autophagy. We report that increased V0-V1 engagement is associated with, and sufficient for, CASM activation. Upon V0-V1 binding, V-ATPase recruits ATG16L1, via K490, during LC3-associated phagocytosis (LAP), STING- and drug-induced CASM, indicating a common mechanism. Furthermore, during LAP, key molecular players, including NADPH oxidase/ROS, converge on V-ATPase. Finally, we show that LAP is sensitive to Salmonella SopF, which disrupts the V-ATPase-ATG16L1 axis and provide evidence that CASM contributes to the Salmonella host response. Together, these data identify V-ATPase as a universal regulator of CASM and indicate that SopF evolved in part to evade non-canonical autophagy.
    MeSH term(s) Autophagy ; Autophagy-Related Proteins/metabolism ; Cell Line ; Humans ; Microtubule-Associated Proteins/metabolism ; Phagocytosis ; Vacuolar Proton-Translocating ATPases/metabolism
    Chemical Substances ATG16L1 protein, human ; Autophagy-Related Proteins ; MAP1LC3A protein, human ; Microtubule-Associated Proteins ; Vacuolar Proton-Translocating ATPases (EC 3.6.1.-)
    Language English
    Publishing date 2022-05-05
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 218154-x
    ISSN 1540-8140 ; 0021-9525
    ISSN (online) 1540-8140
    ISSN 0021-9525
    DOI 10.1083/jcb.202105112
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Nouveaux biomarqueurs viraux des lésions du col de l'utérus associées aux papillomavirus humains.

    Jacquin, Élise / Guenat, David / Riethmuller, Didier / Mougin, Christiane / Prétet, Jean-Luc

    Virologie (Montrouge, France)

    2020  Volume 18, Issue 4, Page(s) 211–228

    Abstract: High-risk human Papillomaviruses (HR-HPV) - the most carcinogenic infectious agents - are responsible for the development of cervical cancer. The knowledge of HPV infection natural history and viral carcinogenesis led to the investigation of viral ... ...

    Title translation Nouveaux biomarqueurs viraux des lésions du col de l’utérus associées aux papillomavirus humains.
    Abstract High-risk human Papillomaviruses (HR-HPV) - the most carcinogenic infectious agents - are responsible for the development of cervical cancer. The knowledge of HPV infection natural history and viral carcinogenesis led to the investigation of viral biomarkers (genotype, viral load, integration, E6/E7 mRNA expression, viral DNA methylation) from clinical samples representative of the evolution of cervical lesions. Mostly concerning HPV16, the literature data agree on an increase of viral load, proportion of samples harboring integrated HPV genomes and methylation of CpG located in the L1 gene with the lesion severity. Viral load and L1 CpG methylation are interesting for clinical practice since appropriate cutoff values allow the identification of precancerous lesions with a high specificity. Although HPV E6/E7 transcript detection is more specific than HPV DNA detection to identify precancerous cervical lesions, viral transcript quantitation and cutoff value determination are unlikely feasible in clinical practice. Taken together, data highlight promising biomarkers that could be integrated to screening algorithms.
    Language English
    Publishing date 2020-09-11
    Publishing country France
    Document type Journal Article
    ZDB-ID 2118387-9
    ISSN 1950-6961 ; 1267-8694
    ISSN (online) 1950-6961
    ISSN 1267-8694
    DOI 10.1684/vir.2014.0571
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  6. Article ; Online: The exon junction complex core factor eIF4A3 is a key regulator of HPV16 gene expression.

    Meznad, Koceila / Paget-Bailly, Philippe / Jacquin, Elise / Peigney, Anne / Aubin, François / Guittaut, Michaël / Mougin, Christiane / Prétet, Jean-Luc / Baguet, Aurélie

    Bioscience reports

    2021  Volume 41, Issue 4

    Abstract: High-risk human papillomavirus (hrHPVs), particularly HPV16 and HPV18, are the etiologic factors of ano-genital cancers and some head and neck squamous cell carcinomas (HNSCCs). Viral E6 and E7 oncoproteins, controlled at both transcriptional and post- ... ...

    Abstract High-risk human papillomavirus (hrHPVs), particularly HPV16 and HPV18, are the etiologic factors of ano-genital cancers and some head and neck squamous cell carcinomas (HNSCCs). Viral E6 and E7 oncoproteins, controlled at both transcriptional and post-transcriptional levels, drive hrHPVs-induced carcinogenesis. In the present study, we investigated the implication of the DEAD-box helicase eukaryotic translation initiation factor 4A3 (eIF4A3,) an Exon Junction Complex factor, in the regulation of HPV16 gene expression. Our data revealed that the depletion of the factor eIF4A3 up-regulated E7 oncoprotein levels. We also showed that the inhibition of the nonsense-mediated RNA decay (NMD) pathway, resulted in the up-regulation of E7 at both RNA and protein levels. We therefore proposed that HPV16 transcripts might present different susceptibilities to NMD and that this pathway could play a key role in the levels of expression of these viral oncoproteins during the development of HPV-related cancers.
    MeSH term(s) Cell Line, Tumor ; DEAD-box RNA Helicases/metabolism ; Eukaryotic Initiation Factor-4A/metabolism ; Host-Pathogen Interactions ; Human papillomavirus 16/genetics ; Human papillomavirus 16/metabolism ; Humans ; Papillomavirus E7 Proteins/genetics ; Papillomavirus E7 Proteins/metabolism
    Chemical Substances Papillomavirus E7 Proteins ; oncogene protein E7, Human papillomavirus type 16 ; Eukaryotic Initiation Factor-4A (EC 2.7.7.-) ; EIF4A3 protein, human (EC 3.6.1.-) ; DEAD-box RNA Helicases (EC 3.6.4.13)
    Language English
    Publishing date 2021-03-24
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 764946-0
    ISSN 1573-4935 ; 0144-8463
    ISSN (online) 1573-4935
    ISSN 0144-8463
    DOI 10.1042/BSR20203488
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  7. Article ; Online: High levels of HPV16-L1 antibody but not HPV16 DNA load or integration predict oropharyngeal patient outcome: The Papillophar study.

    Prétet, Jean-Luc / Dalstein, Véronique / Touzé, Antoine / Beby-Defaux, Agnès / Soussan, Patrick / Jacquin, Élise / Birembaut, Philippe / Clavel, Christine / Mougin, Christiane / Rousseau, Alexandra / Lacau Saint Guily, Jean

    Clinical and experimental medicine

    2022  Volume 23, Issue 1, Page(s) 87–96

    Abstract: The incidence of oropharyngeal cancers (OPC) is increasing in the world. Among OPC, those induced by human papillomaviruses have a better prognosis than non-HPV-associated OPC. The objective of this study was to highlight the relevance of HPV16 load, ... ...

    Abstract The incidence of oropharyngeal cancers (OPC) is increasing in the world. Among OPC, those induced by human papillomaviruses have a better prognosis than non-HPV-associated OPC. The objective of this study was to highlight the relevance of HPV16 load, HPV16 DNA integration and HPV16-L1 serology on progression-free survival and overall survival of OPC patients. The PAPILLOPHAR cohort consists of 362 patients with oropharyngeal squamous cell carcinomas prospectively followed up for 5 years after treatment. Tumor biopsies and sera were collected at inclusion to investigate tumor HPV DNA/RNA characteristics and HPV16 L1 serology, respectively. Twenty-seven percent of tumor biopsies were HPV DNA- and RNA-positive and HPV16 represented 93% of HPV-positive cases. Among them, neither HPV16 viral load nor HPV16 DNA integration was associated with overall survival (OS) or progression-free survival (PFS). In contrast, high anti-HPV16 L1 antibody titers were significantly associated with a better OS and PFS. This study reveals that HPV16 load and integration are not relevant prognosis biomarkers in OPC patients.Clinical Relevance: High levels of HPV16 L1 antibodies may be useful to predict OPC patient outcome following treatment.ClinicalTrials.gov Identifier: NCT00918710, May 2017.
    MeSH term(s) Humans ; Human papillomavirus 16/genetics ; Antibodies, Viral ; Oropharyngeal Neoplasms/pathology ; Prognosis ; DNA, Viral/genetics
    Chemical Substances Antibodies, Viral ; DNA, Viral
    Language English
    Publishing date 2022-02-23
    Publishing country Italy
    Document type Journal Article
    ZDB-ID 2053018-3
    ISSN 1591-9528 ; 1591-8890
    ISSN (online) 1591-9528
    ISSN 1591-8890
    DOI 10.1007/s10238-022-00796-2
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  8. Article ; Online: Pharmacological modulators of autophagy activate a parallel noncanonical pathway driving unconventional LC3 lipidation.

    Jacquin, Elise / Leclerc-Mercier, Stéphanie / Judon, Celine / Blanchard, Emmanuelle / Fraitag, Sylvie / Florey, Oliver

    Autophagy

    2017  Volume 13, Issue 5, Page(s) 854–867

    Abstract: The modulation of canonical macroautophagy/autophagy for therapeutic benefit is an emerging strategy of medical and pharmaceutical interest. Many drugs act to inhibit autophagic flux by targeting lysosome function, while others were developed to activate ...

    Abstract The modulation of canonical macroautophagy/autophagy for therapeutic benefit is an emerging strategy of medical and pharmaceutical interest. Many drugs act to inhibit autophagic flux by targeting lysosome function, while others were developed to activate the pathway. Here, we report the surprising finding that many therapeutically relevant autophagy modulators with lysosomotropic and ionophore properties, classified as inhibitors of canonical autophagy, are also capable of activating a parallel noncanonical autophagy pathway that drives MAP1LC3/LC3 lipidation on endolysosomal membranes. Further, we provide the first evidence supporting drug-induced noncanonical autophagy in vivo using the local anesthetic lidocaine and human skin biopsies. In addition, we find that several published inducers of autophagy and mitophagy are also potent activators of noncanonical autophagy. Together, our data raise important issues regarding the interpretation of LC3 lipidation data and the use of autophagy modulators, and highlight the need for a greater understanding of the functional consequences of noncanonical autophagy.
    MeSH term(s) Autophagy/physiology ; Cell Line ; Endosomes/metabolism ; Humans ; Lipid Metabolism/physiology ; Lipids ; Lysosomes/metabolism ; Microtubule-Associated Proteins/metabolism ; Mitophagy/physiology
    Chemical Substances Lipids ; MAP1LC3A protein, human ; Microtubule-Associated Proteins
    Language English
    Publishing date 2017-02-15
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2454135-7
    ISSN 1554-8635 ; 1554-8627
    ISSN (online) 1554-8635
    ISSN 1554-8627
    DOI 10.1080/15548627.2017.1287653
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  9. Article ; Online: Heat shock and HSP70 regulate 5-FU-mediated caspase-1 activation in myeloid-derived suppressor cells and tumor growth in mice.

    Pilot, Thomas / Fratti, Aurélie / Thinselin, Chloé / Perrichet, Anaïs / Demontoux, Lucie / Limagne, Emeric / Derangère, Valentin / Ilie, Alis / Ndiaye, Mané / Jacquin, Elise / Garrido, Carmen / Ghiringhelli, François / Chalmin, Fanny / Rébé, Cédric

    Journal for immunotherapy of cancer

    2020  Volume 8, Issue 1

    Abstract: Background: We have previously shown that 5-fluorouracil (5-FU) selectively kills myeloid-derived suppressor cells (MDSCs) and activates NLRP3 (NOD-leucine rich repeat and pyrin containing protein 3) inflammasome. NLRP3 activation leads to caspase-1 ... ...

    Abstract Background: We have previously shown that 5-fluorouracil (5-FU) selectively kills myeloid-derived suppressor cells (MDSCs) and activates NLRP3 (NOD-leucine rich repeat and pyrin containing protein 3) inflammasome. NLRP3 activation leads to caspase-1 activation and production of IL-1β, which in turn favors secondary tumor growth. We decided to explore the effects of either a heat shock (HS) or the deficiency in heat shock protein (HSP) 70, previously shown to respectively inhibit or increase NLRP3 inflammasome activation in macrophages.
    Methods: Caspase-1 activation was detected in vitro in MSC-2 cells by western blot and in vivo or ex vivo in tumor and/or splenic MDSCs by flow cytometry. The effects of HS, HSP70 deficiency and anakinra (an IL-1 inhibitor) on tumor growth and mice survival were studied in C57BL/6 WT or
    Results: HS inhibits 5-FU-mediated caspase-1 activation in vitro and in vivo without affecting its cytotoxicity on MDSCs. Moreover, it enhances the antitumor effect of 5-FU treatment and favors mice survival. Interestingly, it is associated to a decreased Th17 and angiogenesis markers in tumors. IL-1β injection is able to bypass HS+5-FU antitumor effects. In contrast, in
    Conclusion: This study provides evidence on the role of HSP70 in tuning 5-FU antitumor effect and suggests that HS can be used to improve 5-FU anticancer effect.
    MeSH term(s) Animals ; Antimetabolites, Antineoplastic/pharmacology ; Caspase 1/metabolism ; Enzyme Activation ; Female ; Fluorouracil/pharmacology ; HSP70 Heat-Shock Proteins/metabolism ; Heat-Shock Response ; Inflammasomes/drug effects ; Inflammasomes/immunology ; Inflammasomes/metabolism ; Lymphoma/drug therapy ; Lymphoma/immunology ; Lymphoma/metabolism ; Lymphoma/pathology ; Mice ; Mice, Inbred BALB C ; Mice, Inbred C57BL ; Myeloid-Derived Suppressor Cells/drug effects ; Myeloid-Derived Suppressor Cells/immunology ; Myeloid-Derived Suppressor Cells/metabolism ; Myeloid-Derived Suppressor Cells/pathology
    Chemical Substances Antimetabolites, Antineoplastic ; HSP70 Heat-Shock Proteins ; Inflammasomes ; Casp1 protein, mouse (EC 3.4.22.36) ; Caspase 1 (EC 3.4.22.36) ; Fluorouracil (U3P01618RT)
    Language English
    Publishing date 2020-05-08
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2719863-7
    ISSN 2051-1426 ; 2051-1426
    ISSN (online) 2051-1426
    ISSN 2051-1426
    DOI 10.1136/jitc-2019-000478
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  10. Article ; Online: MEK inhibition overcomes chemoimmunotherapy resistance by inducing CXCL10 in cancer cells.

    Limagne, Emeric / Nuttin, Lisa / Thibaudin, Marion / Jacquin, Elise / Aucagne, Romain / Bon, Marjorie / Revy, Solène / Barnestein, Robby / Ballot, Elise / Truntzer, Caroline / Derangère, Valentin / Fumet, Jean-David / Latour, Charlène / Rébé, Cédric / Bellaye, Pierre-Simon / Kaderbhaï, Coureche-Guillaume / Spill, Aodrenn / Collin, Bertrand / Callanan, Mary B /
    Lagrange, Aurélie / Favier, Laure / Coudert, Bruno / Arnould, Laurent / Ladoire, Sylvain / Routy, Bertrand / Joubert, Philippe / Ghiringhelli, François

    Cancer cell

    2022  Volume 40, Issue 2, Page(s) 136–152.e12

    Abstract: Chemotherapy with anti PD-1/PD-L1 antibodies has become the standard of care for patients with metastatic non-small cell lung cancer (mNSCLC). Using lung tumor models, where pemetrexed and cisplatin (PEM/CDDP) chemotherapy remains unable to synergize ... ...

    Abstract Chemotherapy with anti PD-1/PD-L1 antibodies has become the standard of care for patients with metastatic non-small cell lung cancer (mNSCLC). Using lung tumor models, where pemetrexed and cisplatin (PEM/CDDP) chemotherapy remains unable to synergize with immune checkpoint inhibitors (ICIs), we linked the failure of this treatment with its inability to induce CXCL10 expression and CD8
    MeSH term(s) Animals ; Antineoplastic Agents/pharmacology ; Antineoplastic Agents/therapeutic use ; Antineoplastic Combined Chemotherapy Protocols/adverse effects ; Antineoplastic Combined Chemotherapy Protocols/therapeutic use ; Autophagy/drug effects ; Autophagy/genetics ; B7-H1 Antigen/antagonists & inhibitors ; Biomarkers, Tumor ; CD8-Positive T-Lymphocytes/immunology ; CD8-Positive T-Lymphocytes/metabolism ; CD8-Positive T-Lymphocytes/pathology ; Cell Line, Tumor ; Chemokine CXCL10/genetics ; Chemokine CXCL10/metabolism ; Disease Models, Animal ; Drug Resistance, Neoplasm/drug effects ; Drug Resistance, Neoplasm/genetics ; Drug Synergism ; Gene Expression Regulation, Neoplastic ; Humans ; Immune Checkpoint Proteins/genetics ; Immune Checkpoint Proteins/metabolism ; Mice ; Mitogen-Activated Protein Kinase Kinases/antagonists & inhibitors ; Mitophagy/genetics ; Mitophagy/immunology ; Neoplasms/drug therapy ; Neoplasms/genetics ; Neoplasms/metabolism ; Neoplasms/pathology ; Protein Binding ; Protein Kinase Inhibitors/pharmacology ; Protein Kinase Inhibitors/therapeutic use ; Signal Transduction ; Tumor Microenvironment/genetics ; Tumor Microenvironment/immunology ; Xenograft Model Antitumor Assays
    Chemical Substances Antineoplastic Agents ; B7-H1 Antigen ; Biomarkers, Tumor ; CD274 protein, human ; CXCL10 protein, human ; Chemokine CXCL10 ; Immune Checkpoint Proteins ; Protein Kinase Inhibitors ; Mitogen-Activated Protein Kinase Kinases (EC 2.7.12.2)
    Language English
    Publishing date 2022-01-19
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2078448-X
    ISSN 1878-3686 ; 1535-6108
    ISSN (online) 1878-3686
    ISSN 1535-6108
    DOI 10.1016/j.ccell.2021.12.009
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