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  1. Article ; Online: Accurate prostate cancer detection based on enrichment and characterization of prostate cancer specific circulating tumor cells.

    Limaye, Sewanti / Chowdhury, Simon / Rohatgi, Nitesh / Ranade, Anantbhushan / Syed, Nelofer / Riedemann, Johann / Patil, Darshana / Akolkar, Dadasaheb / Datta, Vineet / Patel, Shoeb / Chougule, Rohit / Shejwalkar, Pradyumna / Bendale, Kiran / Apurwa, Sachin / Schuster, Stefan / John, Jinumary / Srinivasan, Ajay / Datar, Rajan

    Cancer medicine

    2023  Volume 12, Issue 8, Page(s) 9116–9127

    Abstract: Background: The low specificity of serum PSA resulting in the inability to effectively differentiate prostate cancer from benign prostate conditions is a persistent clinical challenge. The low sensitivity of serum PSA results in false negatives and can ... ...

    Abstract Background: The low specificity of serum PSA resulting in the inability to effectively differentiate prostate cancer from benign prostate conditions is a persistent clinical challenge. The low sensitivity of serum PSA results in false negatives and can miss high-grade prostate cancers. We describe a non-invasive test for detection of prostate cancer based on functional enrichment of prostate adenocarcinoma associated circulating tumor cells (PrAD-CTCs) from blood samples followed by their identification by immunostaining for pan-cytokeratins (PanCK), prostate specific membrane antigen (PSMA), alpha methyl-acyl coenzyme-A racemase (AMACR), epithelial cell adhesion molecule (EpCAM), and common leucocyte antigen (CD45).
    Methods: Analytical validation studies were performed to establish the performance characteristics of the test using VCaP prostate cancer cells spiked into healthy donor blood (HDB). The clinical performance characteristics of the test were evaluated in a case-control study with 160 known prostate cancer cases and 800 healthy males, followed by a prospective clinical study of 210 suspected cases of prostate cancer.
    Results: Analytical validation established analyte stability as well as acceptable performance characteristics. The test showed 100% specificity and 100% sensitivity to differentiate prostate cancer cases from healthy individuals in the case control study and 91.2% sensitivity and 100% specificity to differentiate prostate cancers from benign prostate conditions in the prospective clinical study.
    Conclusions: The test accurately detects PrAD-CTCs with high sensitivity and specificity irrespective of stage, serum PSA or Gleason score, which translates into low risks of false negatives or overdiagnosis. The high accuracy of the test could offer advantages over PSA based prostate cancer detection.
    MeSH term(s) Male ; Humans ; Prostate-Specific Antigen ; Prostate/pathology ; Case-Control Studies ; Neoplastic Cells, Circulating ; Prospective Studies ; Prostatic Neoplasms/pathology ; Biomarkers, Tumor
    Chemical Substances Prostate-Specific Antigen (EC 3.4.21.77) ; Biomarkers, Tumor
    Language English
    Publishing date 2023-01-30
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2659751-2
    ISSN 2045-7634 ; 2045-7634
    ISSN (online) 2045-7634
    ISSN 2045-7634
    DOI 10.1002/cam4.5649
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Addendum: Liquid biopsy and multi-analyte testing guided treatment of

    Nagarkar, Rajnish / Patil, Darshana / Limaye, Sewanti / Devhare, Pradip / Ghaisas, Ashwini / Srivastava, Navin / Apurwa, Sachin / Patil, Sanket / John, Jinumary / Raazi, Zarrine / Shreenivas, Aditya / Sambath, Janani / Srinivasan, Ajay / Kumar, Prashant / Akolkar, Dadasaheb / Datar, Rajan

    Oncotarget

    2022  Volume 13, Page(s) 1215

    Language English
    Publishing date 2022-11-02
    Publishing country United States
    Document type Published Erratum
    ZDB-ID 2560162-3
    ISSN 1949-2553 ; 1949-2553
    ISSN (online) 1949-2553
    ISSN 1949-2553
    DOI 10.18632/oncotarget.28296
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Circulating tumor cell assay to non-invasively evaluate PD-L1 and other therapeutic targets in multiple cancers.

    Page, Raymond / Patil, Darshana / Akolkar, Dadasaheb / Murthy, Sudha S / Bendale, Kiran / Patil, Revati / Fulmali, Pradeep / Fulmali, Pooja / Adhav, Archana / Puranik, Sneha / Apurwa, Sachin / Datta, Vineet / Bose, Chirantan / Schuster, Stefan / John, Jinumary / Srinivasan, Ajay / Datar, Rajan

    PloS one

    2022  Volume 17, Issue 6, Page(s) e0270139

    Abstract: Biomarker directed selection of targeted anti-neoplastic agents such as immune checkpoint inhibitors, small molecule inhibitors and monoclonal antibodies form an important aspect of cancer treatment. Immunohistochemistry (IHC) analysis of the tumor ... ...

    Abstract Biomarker directed selection of targeted anti-neoplastic agents such as immune checkpoint inhibitors, small molecule inhibitors and monoclonal antibodies form an important aspect of cancer treatment. Immunohistochemistry (IHC) analysis of the tumor tissue is the method of choice to evaluate the presence of these biomarkers. However, a significant barrier to biomarker testing on tissue is the availability of an adequate amount of tissue and need for repetitive sampling due to tumor evolution. Also, tumor tissue testing is not immune to inter- and intra-tumor heterogeneity. We describe the analytical and clinical validation of a Circulating Tumor Cell (CTC) assay to accurately assess the presence of PD-L1 22C3 and PD-L1 28.8, ER, PR and HER2, from patients with solid tumors to guide the choice of suitable targeted therapies. Analytically, the test has high sensitivity, specificity, linearity and precision. Based on a blinded case control study, the clinical sensitivity and specificity for PD-L1 (22C3 and 28.8) was determined to be 90% and 100% respectively. The clinical sensitivity and specificity was 83% and 89% for ER; 80% and 94% for PR; 63% and 89% for HER2 (by ICC); and 100% and 92% for HER2 (by FISH), respectively. The performance characteristics of the test support its suitability and adaptability for routine clinical use.
    MeSH term(s) B7-H1 Antigen ; Biomarkers, Tumor/analysis ; Carcinoma, Non-Small-Cell Lung/pathology ; Case-Control Studies ; Humans ; Lung Neoplasms/pathology ; Neoplastic Cells, Circulating
    Chemical Substances B7-H1 Antigen ; Biomarkers, Tumor
    Language English
    Publishing date 2022-06-17
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0270139
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Response to pazopanib-based combination regimen in a case of FGFR3 amplified gastric adenocarcinoma.

    Limaye, Sewanti / Patil, Darshana / Akolkar, Dadasaheb / Srivastava, Navin / Patil, Revati / Apurwa, Sachin / Patil, Sanket / John, Jinumary / Gosavi, Rahul / Nesargikar, Prabhu / Kumar, Prashant / Datta, Vineet / Bose, Chirantan / Raazi, Zarrine / Srinivasan, Ajay / Datar, Rajan

    Clinical case reports

    2021  Volume 9, Issue 11, Page(s) e04986

    Abstract: Angiogenesis inhibitors (AGI) are not presently used for the treatment of gastric cancers. This report demonstrates that angiogenesis inhibitor can be safely and effectively used in combination with cytotoxic anti-cancer agents for treatment of Gastric ... ...

    Abstract Angiogenesis inhibitors (AGI) are not presently used for the treatment of gastric cancers. This report demonstrates that angiogenesis inhibitor can be safely and effectively used in combination with cytotoxic anti-cancer agents for treatment of Gastric cancers.
    Language English
    Publishing date 2021-11-07
    Publishing country England
    Document type Case Reports
    ZDB-ID 2740234-4
    ISSN 2050-0904
    ISSN 2050-0904
    DOI 10.1002/ccr3.4986
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Liquid biopsy and multi-analyte testing guided treatment of

    Nagarkar, Rajnish / Patil, Darshana / Limaye, Sewanti / Devhare, Pradip / Ghaisas, Ashwini / Srivastava, Navin / Apurwa, Sachin / Patil, Sanket / John, Jinumary / Raazi, Zarrine / Shreenivas, Aditya / Sambath, Janani / Srinivasan, Ajay / Kumar, Prashant / Akolkar, Dadasaheb / Datar, Rajan

    Oncotarget

    2020  Volume 11, Issue 45, Page(s) 4195–4200

    Abstract: Periampullary adenocarcinomas are rare neoplasm that originates from the pancreatic head, the ampulla of vater, the distal bile duct or the duodenum. Surgical resection followed by adjuvant therapy is considered as the standard of care treatment for ... ...

    Abstract Periampullary adenocarcinomas are rare neoplasm that originates from the pancreatic head, the ampulla of vater, the distal bile duct or the duodenum. Surgical resection followed by adjuvant therapy is considered as the standard of care treatment for these carcinomas. Despite several advances in diagnostics and therapeutics, only 5% of these patients have an overall survival of five years or more. Currently, there is a dearth of viable therapeutic targets for this disease. The role of HER2 in cancer biology has been studied extensively in several tumour subtypes, and HER2 based targeted therapies have shown to have therapeutic benefits on different cancers. In this case report, we present a case of HER2 positive distal common bile duct carcinoma - a subtype of periampullary carcinoma with multiple relapses where multi-analyte testing with Encyclopedic Tumor Analysis (ETA) (Exacta
    Language English
    Publishing date 2020-11-10
    Publishing country United States
    Document type Case Reports
    ZDB-ID 2560162-3
    ISSN 1949-2553 ; 1949-2553
    ISSN (online) 1949-2553
    ISSN 1949-2553
    DOI 10.18632/oncotarget.27793
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Development and validation of a multigene variant profiling assay to guide targeted and immuno therapy selection in solid tumors.

    Akolkar, Dadasaheb / Patil, Darshana / Srivastava, Navin / Patil, Revati / Datta, Vineet / Apurwa, Sachin / Yashwante, Nitin / Dhasarathan, Raja / Gosavi, Rahul / John, Jinumary / Khan, Shabishta / Jadhav, Ninad / Mene, Priti / Ahire, Dhanashri / Pawar, Sushant / Bodke, Harshal / Sahoo, Subhraline / Nile, Arun / Saindane, Dinesh /
    Darokar, Harshal / Devhare, Pradip / Srinivasan, Ajay / Datar, Rajan

    PloS one

    2021  Volume 16, Issue 2, Page(s) e0246048

    Abstract: We present data on analytical validation of the multigene variant profiling assay (CellDx) to provide actionable indications for selection of targeted and immune checkpoint inhibitor (ICI) therapy in solid tumors. CellDx includes Next Generation ... ...

    Abstract We present data on analytical validation of the multigene variant profiling assay (CellDx) to provide actionable indications for selection of targeted and immune checkpoint inhibitor (ICI) therapy in solid tumors. CellDx includes Next Generation Sequencing (NGS) profiling of gene variants in a targeted 452-gene panel as well as status of total Tumor Mutation Burden (TMB), Microsatellite instability (MSI), Mismatch Repair (MMR) and Programmed Cell Death-Ligand 1 (PD-L1) respectively. Validation parameters included accuracy, sensitivity, specificity and reproducibility for detection of Single Nucleotide Alterations (SNAs), Copy Number Alterations (CNAs), Insertions and Deletions (Indels), Gene fusions, MSI and PDL1. Cumulative analytical sensitivity and specificity of the assay were 99.03 (95% CI: 96.54-99.88) and 99.23% (95% CI: 98.54% - 99.65%) respectively with 99.20% overall Accuracy (95% CI: 98.57% - 99.60%) and 99.7% Precision based on evaluation of 116 reference samples. The clinical performance of CellDx was evaluated in a subsequent analysis of 299 clinical samples where 861 unique mutations were detected of which 791 were oncogenic and 47 were actionable. Indications in MMR, MSI and TMB for selection of ICI therapies were also detected in the clinical samples. The high specificity, sensitivity, accuracy and reproducibility of the CellDx assay is suitable for clinical application for guiding selection of targeted and immunotherapy agents in patients with solid organ tumors.
    MeSH term(s) Genetic Variation/genetics ; High-Throughput Nucleotide Sequencing ; Humans ; Immunotherapy ; Limit of Detection ; Molecular Targeted Therapy ; Multigene Family/genetics ; Mutation ; Neoplasms/genetics ; Neoplasms/immunology ; Neoplasms/therapy
    Language English
    Publishing date 2021-02-08
    Publishing country United States
    Document type Journal Article ; Validation Study
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0246048
    Database MEDical Literature Analysis and Retrieval System OnLINE

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