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  1. Article: Evolution of the ability to modulate host chemokine networks via gene duplication in human cytomegalovirus (HCMV)

    Scarborough, Jessica A / John R. Paul / Juliet V. Spencer

    Infection, genetics, and evolution. 2017 July, v. 51

    2017  

    Abstract: Human cytomegalovirus (HCMV) is a widespread pathogen that is particularly skillful at evading immune detection and defense mechanisms, largely due to extensive co-evolution with its host. One aspect of this co-evolution involves the acquisition of ... ...

    Abstract Human cytomegalovirus (HCMV) is a widespread pathogen that is particularly skillful at evading immune detection and defense mechanisms, largely due to extensive co-evolution with its host. One aspect of this co-evolution involves the acquisition of virally encoded G protein-coupled receptors (GPCRs) with homology to the chemokine receptor family. GPCRs are the largest family of cell surface proteins, found in organisms from yeast to humans, and they regulate a variety of cellular processes including development, sensory perception, and immune cell trafficking. The US27 and US28 genes are encoded by human and primate CMVs, but homologs are not found in the genomes of viruses infecting rodents or other species. Phylogenetic analysis was used to investigate the US27 and US28 genes, which are adjacent in the unique short (US) region of the HCMV genome, and their relationship to one another and to human chemokine receptor genes. The results indicate that both US27 and US28 share the same common ancestor with human chemokine receptor CX3CR1, suggesting that a single host gene was captured and a subsequent viral gene duplication event occurred. The US28 gene product (pUS28) has maintained the function of the ancestral gene and has the ability to bind and signal in response to CX3CL1/fractalkine, the natural ligand for CX3CR1. In contrast, pUS27 does not bind to any known chemokine ligand, and the sequence has diverged significantly, highlighted by the fact that pUS27 currently exhibits greater sequence similarity to human CCR1. While the evolutionary advantage of the gene duplication and neofunctionalization event remains unclear, the US27 and US28 genes are highly conserved among different HCMV strains and retained even in laboratory strains that have lost many virulence genes, suggesting that US27 and US28 have each evolved distinct, important functions during virus infection.
    Keywords CCR1 receptor ; chemokines ; coevolution ; defense mechanisms ; gene duplication ; genes ; Human herpesvirus 5 ; humans ; ligands ; pathogens ; phylogeny ; rodents ; sensation ; sequence homology ; surface proteins ; virulence ; viruses ; yeasts
    Language English
    Dates of publication 2017-07
    Size p. 46-53.
    Publishing place Elsevier B.V.
    Document type Article
    ZDB-ID 2037068-4
    ISSN 1567-1348
    ISSN 1567-1348
    DOI 10.1016/j.meegid.2017.03.013
    Database NAL-Catalogue (AGRICOLA)

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  2. Article: Genetics of water use physiology in locally adapted Arabidopsis thaliana

    Mojica, Julius P / Christopher G. Oakley / J. Grey Monroe / Jack Mullen / John K. McKay / John R. Paul / John T. Lovell

    Elsevier Ireland Ltd Plant science. 2016 Oct., v. 251

    2016  

    Abstract: Identifying the genetic basis of adaptation to climate has long been a goal in evolutionary biology and has applications in agriculture. Adaptation to drought represents one important aspect of local adaptation, and drought is the major factor limiting ... ...

    Abstract Identifying the genetic basis of adaptation to climate has long been a goal in evolutionary biology and has applications in agriculture. Adaptation to drought represents one important aspect of local adaptation, and drought is the major factor limiting agricultural yield. We examined local adaptation between Sweden and Italy Arabidopsis thaliana ecotypes, which show contrasting levels of water availability in their local environments. To identify quantitative trait loci (QTL) controlling water use physiology traits and adaptive trait QTL (genomic regions where trait QTL and fitness QTL colocalize), we performed QTL mapping on 374F9 recombinant inbred lines in well-watered and terminal drought conditions. We found 72 QTL (32 in well-watered, 31 in drought, 9 for plasticity) across five water use physiology traits: δ13C, rosette area, dry rosette weight, leaf water content and percent leaf nitrogen. Some of these genomic regions colocalize with fitness QTL and with other physiology QTL in defined hotspots. In addition, we found evidence of both constitutive and inducible water use physiology QTL. Finally, we identified highly divergent candidate genes, in silico. Our results suggest that many genes with minor effects may influence adaptation through water use physiology and that pleiotropic water use physiology QTL have fitness consequences.
    Keywords Arabidopsis thaliana ; chromosome mapping ; climate ; drought ; ecotypes ; genes ; inbred lines ; leaves ; nitrogen ; plant adaptation ; plant-water relations ; quantitative trait loci ; water content ; Italy ; Sweden
    Language English
    Dates of publication 2016-10
    Size p. 12-22.
    Publishing place Elsevier B.V.
    Document type Article
    ZDB-ID 742010-9
    ISSN 1873-2259 ; 0168-9452
    ISSN (online) 1873-2259
    ISSN 0168-9452
    DOI 10.1016/j.plantsci.2016.03.015
    Database NAL-Catalogue (AGRICOLA)

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