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  1. Article ; Online: The plant immune system: From discovery to deployment.

    Jones, Jonathan D G / Staskawicz, Brian J / Dangl, Jeffery L

    Cell

    2024  Volume 187, Issue 9, Page(s) 2095–2116

    Abstract: Plant diseases cause famines, drive human migration, and present challenges to agricultural sustainability as pathogen ranges shift under climate change. Plant breeders discovered Mendelian genetic loci conferring disease resistance to specific pathogen ... ...

    Abstract Plant diseases cause famines, drive human migration, and present challenges to agricultural sustainability as pathogen ranges shift under climate change. Plant breeders discovered Mendelian genetic loci conferring disease resistance to specific pathogen isolates over 100 years ago. Subsequent breeding for disease resistance underpins modern agriculture and, along with the emergence and focus on model plants for genetics and genomics research, has provided rich resources for molecular biological exploration over the last 50 years. These studies led to the identification of extracellular and intracellular receptors that convert recognition of extracellular microbe-encoded molecular patterns or intracellular pathogen-delivered virulence effectors into defense activation. These receptor systems, and downstream responses, define plant immune systems that have evolved since the migration of plants to land ∼500 million years ago. Our current understanding of plant immune systems provides the platform for development of rational resistance enhancement to control the many diseases that continue to plague crop production.
    MeSH term(s) Plant Diseases/immunology ; Plant Diseases/microbiology ; Plant Immunity/genetics ; Plants/immunology ; Plants/genetics ; Disease Resistance/genetics ; Humans
    Language English
    Publishing date 2024-04-11
    Publishing country United States
    Document type Journal Article ; Review ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 187009-9
    ISSN 1097-4172 ; 0092-8674
    ISSN (online) 1097-4172
    ISSN 0092-8674
    DOI 10.1016/j.cell.2024.03.045
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    Zs.A 1167: Show issues Location:
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  2. Article ; Online: Flor-iculture: Ellis and Dodds' Illumination of Gene-for-Gene Biology.

    Jones, Jonathan D G

    The Plant cell

    2019  Volume 31, Issue 6, Page(s) 1204–1205

    MeSH term(s) Flax/metabolism ; Saccharomyces cerevisiae/metabolism ; Saccharomyces cerevisiae Proteins/metabolism
    Chemical Substances Saccharomyces cerevisiae Proteins
    Language English
    Publishing date 2019-04-29
    Publishing country England
    Document type Editorial
    ZDB-ID 623171-8
    ISSN 1532-298X ; 1040-4651
    ISSN (online) 1532-298X
    ISSN 1040-4651
    DOI 10.1105/tpc.19.00307
    Database MEDical Literature Analysis and Retrieval System OnLINE

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    Z 4952: Show issues

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  3. Article ; Online: The curious case of the bacterial engineer.

    Jones, Jonathan D G

    Nature plants

    2019  Volume 5, Issue 9, Page(s) 906–907

    Language English
    Publishing date 2019-09-02
    Publishing country England
    Document type Journal Article
    ISSN 2055-0278
    ISSN (online) 2055-0278
    DOI 10.1038/s41477-019-0516-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Pangenomic analysis reveals plant NAD

    Hulin, Michelle T / Hill, Lionel / Jones, Jonathan D G / Ma, Wenbo

    Proceedings of the National Academy of Sciences of the United States of America

    2023  Volume 120, Issue 7, Page(s) e2217114120

    Abstract: Nicotinamide adenine dinucleotide ( ... ...

    Abstract Nicotinamide adenine dinucleotide (NAD
    MeSH term(s) Virulence ; NAD/metabolism ; Cyclic ADP-Ribose/metabolism ; Bacteria/metabolism ; Plants/metabolism ; Pseudomonas syringae/metabolism ; NAD+ Nucleosidase/genetics ; NAD+ Nucleosidase/metabolism ; Bacterial Proteins/genetics ; Bacterial Proteins/metabolism ; Plant Diseases/microbiology
    Chemical Substances NAD (0U46U6E8UK) ; Cyclic ADP-Ribose (119340-53-3) ; NAD+ Nucleosidase (EC 3.2.2.5) ; Bacterial Proteins
    Language English
    Publishing date 2023-02-08
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 209104-5
    ISSN 1091-6490 ; 0027-8424
    ISSN (online) 1091-6490
    ISSN 0027-8424
    DOI 10.1073/pnas.2217114120
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    Zs.A 1148: Show issues Location:
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  5. Article ; Online: Cell-specific RNA profiling reveals host genes expressed in Arabidopsis cells haustoriated by downy mildew.

    Asai, Shuta / Cevik, Volkan / Jones, Jonathan D G / Shirasu, Ken

    Plant physiology

    2023  Volume 193, Issue 1, Page(s) 259–270

    Abstract: The downy mildew oomycete Hyaloperonospora arabidopsidis, an obligate filamentous pathogen, infects Arabidopsis (Arabidopsis thaliana) by forming structures called haustoria inside host cells. Previous transcriptome analyses have revealed that host genes ...

    Abstract The downy mildew oomycete Hyaloperonospora arabidopsidis, an obligate filamentous pathogen, infects Arabidopsis (Arabidopsis thaliana) by forming structures called haustoria inside host cells. Previous transcriptome analyses have revealed that host genes are specifically induced during infection; however, RNA profiling from whole-infected tissues may fail to capture key transcriptional events occurring exclusively in haustoriated host cells, where the pathogen injects virulence effectors to modulate host immunity. To determine interactions between Arabidopsis and H. arabidopsidis at the cellular level, we devised a translating ribosome affinity purification system using 2 high-affinity binding proteins, colicin E9 and Im9 (immunity protein of colicin E9), applicable to pathogen-responsive promoters, thus enabling haustoriated cell-specific RNA profiling. Among the host genes specifically expressed in H. arabidopsidis-haustoriated cells, we found genes that promote either susceptibility or resistance to the pathogen, providing insights into the Arabidopsis-downy mildew interaction. We propose that our protocol for profiling cell-specific transcripts will apply to several stimulus-specific contexts and other plant-pathogen interactions.
    MeSH term(s) Arabidopsis/genetics ; RNA/metabolism ; Colicins/metabolism ; Host-Pathogen Interactions/genetics ; Oomycetes ; Peronospora ; Plant Diseases/genetics
    Chemical Substances RNA (63231-63-0) ; Colicins
    Language English
    Publishing date 2023-06-12
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 208914-2
    ISSN 1532-2548 ; 0032-0889
    ISSN (online) 1532-2548
    ISSN 0032-0889
    DOI 10.1093/plphys/kiad326
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  6. Article ; Online: Thirty years of resistance: Zig-zag through the plant immune system.

    Ngou, Bruno Pok Man / Ding, Pingtao / Jones, Jonathan D G

    The Plant cell

    2022  Volume 34, Issue 5, Page(s) 1447–1478

    Abstract: Understanding the plant immune system is crucial for using genetics to protect crops from diseases. Plants resist pathogens via a two-tiered innate immune detection-and-response system. The first plant Resistance (R) gene was cloned in 1992 . Since then, ...

    Abstract Understanding the plant immune system is crucial for using genetics to protect crops from diseases. Plants resist pathogens via a two-tiered innate immune detection-and-response system. The first plant Resistance (R) gene was cloned in 1992 . Since then, many cell-surface pattern recognition receptors (PRRs) have been identified, and R genes that encode intracellular nucleotide-binding leucine-rich repeat receptors (NLRs) have been cloned. Here, we provide a list of characterized PRRs and NLRs. In addition to immune receptors, many components of immune signaling networks were discovered over the last 30 years. We review the signaling pathways, physiological responses, and molecular regulation of both PRR- and NLR-mediated immunity. Recent studies have reinforced the importance of interactions between the two immune systems. We provide an overview of interactions between PRR- and NLR-mediated immunity, highlighting challenges and perspectives for future research.
    MeSH term(s) Crops, Agricultural/metabolism ; Immunity, Innate/genetics ; Plant Diseases/genetics ; Plant Immunity/genetics ; Receptors, Pattern Recognition/genetics ; Receptors, Pattern Recognition/metabolism ; Signal Transduction/genetics
    Chemical Substances Receptors, Pattern Recognition
    Language English
    Publishing date 2022-02-26
    Publishing country England
    Document type Journal Article ; Review ; Research Support, Non-U.S. Gov't
    ZDB-ID 623171-8
    ISSN 1532-298X ; 1040-4651
    ISSN (online) 1532-298X
    ISSN 1040-4651
    DOI 10.1093/plcell/koac041
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  7. Article ; Online: Concerted actions of PRR- and NLR-mediated immunity.

    Rhodes, Jack / Zipfel, Cyril / Jones, Jonathan D G / Ngou, Bruno Pok Man

    Essays in biochemistry

    2022  Volume 66, Issue 5, Page(s) 501–511

    Abstract: Plants utilise cell-surface immune receptors (functioning as pattern recognition receptors, PRRs) and intracellular nucleotide-binding leucine-rich repeat receptors (NLRs) to detect pathogens. Perception of pathogens by these receptors activates immune ... ...

    Abstract Plants utilise cell-surface immune receptors (functioning as pattern recognition receptors, PRRs) and intracellular nucleotide-binding leucine-rich repeat receptors (NLRs) to detect pathogens. Perception of pathogens by these receptors activates immune signalling and resistance to infections. PRR- and NLR-mediated immunity have primarily been considered parallel processes contributing to disease resistance. Recent studies suggest that these two pathways are interdependent and converge at multiple nodes. This review summarises and provides a perspective on these convergent points.
    MeSH term(s) Leucine ; NLR Proteins/metabolism ; Nucleotides ; Plant Immunity ; Receptors, Pattern Recognition/metabolism
    Chemical Substances NLR Proteins ; Nucleotides ; Receptors, Pattern Recognition ; Leucine (GMW67QNF9C)
    Language English
    Publishing date 2022-06-28
    Publishing country England
    Document type Journal Article ; Review ; Research Support, Non-U.S. Gov't
    ISSN 1744-1358 ; 0071-1365
    ISSN (online) 1744-1358
    ISSN 0071-1365
    DOI 10.1042/EBC20220067
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  8. Article ; Online: Genetic manipulation of Indian mustard genotypes with WRR-gene(s) confers resistance against Albugo candida.

    Nirwan, Shradha / Chatterjee, Anupriya / Cevik, Volkan / Holub, Eric B / Jones, Jonathan D G / Tewari, Anand Kumar / Shrivastava, Neeraj / Agnihotri, Abha / Sharma, Pankaj

    Molecular biology reports

    2024  Volume 51, Issue 1, Page(s) 199

    Abstract: Background: Brassica species is the second most important edible oilseed crop in India. Albugo candida (Pers.) Kuntze, a major oomycete disease of oilseed brassica causing white rust, leads to 60% yield loss globally. The prevalence of A. candida race 2 ...

    Abstract Background: Brassica species is the second most important edible oilseed crop in India. Albugo candida (Pers.) Kuntze, a major oomycete disease of oilseed brassica causing white rust, leads to 60% yield loss globally. The prevalence of A. candida race 2 (Ac2V) that specifically infects B. juncea, coupled with limitations of conventional methods has resulted in a dearth of white rust resistance resources in cultivated varieties.
    Methods and results: In an effort to develop resistant plants, Agrobacterium mediated genetic transformation of three B. juncea genotypes viz., susceptible host var. Varuna, along with its doubled haploid mutant lines C66 and C69 (showing moderate tolerance to field isolates of A. candida) was initiated to transfer resistance genes (WRR8
    Conclusions: Our results demonstrate that introduction of resistance genes from a tertiary gene pool by genetic transformation enhances disease resistance in B. juncea genotypes to a highly virulent Ac2V isolate.
    MeSH term(s) Mustard Plant/genetics ; Genotype ; Oomycetes ; Agrobacterium ; Arabidopsis/genetics ; Candida
    Language English
    Publishing date 2024-01-25
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 186544-4
    ISSN 1573-4978 ; 0301-4851
    ISSN (online) 1573-4978
    ISSN 0301-4851
    DOI 10.1007/s11033-023-09040-w
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    Zs.A 1140: Show issues Location:
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  9. Article ; Online: Plant immune networks.

    Ngou, Bruno Pok Man / Jones, Jonathan D G / Ding, Pingtao

    Trends in plant science

    2021  Volume 27, Issue 3, Page(s) 255–273

    Abstract: Plants have both cell-surface and intracellular receptors to recognize diverse self- and non-self molecules. Cell-surface pattern recognition receptors (PRRs) recognize extracellular pathogen-/damage-derived molecules or apoplastic pathogen-derived ... ...

    Abstract Plants have both cell-surface and intracellular receptors to recognize diverse self- and non-self molecules. Cell-surface pattern recognition receptors (PRRs) recognize extracellular pathogen-/damage-derived molecules or apoplastic pathogen-derived effectors. Intracellular nucleotide-binding leucine-rich repeat proteins (NLRs) recognize pathogen effectors. Activation of both PRRs and NLRs elevates defense gene expression and accumulation of the phytohormone salicylic acid (SA), which results in SA-dependent transcriptional reprogramming. These receptors, together with their coreceptors, form networks to mediate downstream immune responses. In addition, cell-surface and intracellular immune systems are interdependent and function synergistically to provide robust resistance against pathogens. Here, we summarize the interactions between these immune systems and attempt to provide a holistic picture of plant immune networks. We highlight current challenges and discuss potential new research directions.
    MeSH term(s) Plant Diseases/genetics ; Plant Immunity/genetics ; Plants/genetics ; Receptors, Pattern Recognition/genetics
    Chemical Substances Receptors, Pattern Recognition
    Language English
    Publishing date 2021-09-18
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 1305448-x
    ISSN 1878-4372 ; 1360-1385
    ISSN (online) 1878-4372
    ISSN 1360-1385
    DOI 10.1016/j.tplants.2021.08.012
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  10. Article ; Online: Editorial overview: An embarrassment of riches.

    Jones, Jonathan D G / Dangl, Jeffery L

    Current opinion in plant biology

    2021  Volume 62, Page(s) 102105

    Language English
    Publishing date 2021-01-13
    Publishing country England
    Document type Editorial
    ZDB-ID 1418472-2
    ISSN 1879-0356 ; 1369-5266
    ISSN (online) 1879-0356
    ISSN 1369-5266
    DOI 10.1016/j.pbi.2021.102105
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