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  1. Article ; Online: Structures of the class D Carbapenemases OXA-23 and OXA-146: mechanistic basis of activity against carbapenems, extended-spectrum cephalosporins, and aztreonam.

    Kaitany, Kip-Chumba J / Klinger, Neil V / June, Cynthia M / Ramey, Maddison E / Bonomo, Robert A / Powers, Rachel A / Leonard, David A

    Antimicrobial agents and chemotherapy

    2013  Volume 57, Issue 10, Page(s) 4848–4855

    Abstract: Class D β-lactamases that hydrolyze carbapenems such as imipenem and doripenem are a recognized danger to the efficacy of these "last-resort" β-lactam antibiotics. Like all known class D carbapenemases, OXA-23 cannot hydrolyze the expanded-spectrum ... ...

    Abstract Class D β-lactamases that hydrolyze carbapenems such as imipenem and doripenem are a recognized danger to the efficacy of these "last-resort" β-lactam antibiotics. Like all known class D carbapenemases, OXA-23 cannot hydrolyze the expanded-spectrum cephalosporin ceftazidime. OXA-146 is an OXA-23 subfamily clinical variant that differs from the parent enzyme by a single alanine (A220) inserted in the loop connecting β-strands β5 and β6. We discovered that this insertion enables OXA-146 to bind and hydrolyze ceftazidime with an efficiency comparable to those of other extended-spectrum class D β-lactamases. OXA-146 also binds and hydrolyzes aztreonam, cefotaxime, ceftriaxone, and ampicillin with higher efficiency than OXA-23 and preserves activity against doripenem. In this study, we report the X-ray crystal structures of both the OXA-23 and OXA-146 enzymes at 1.6-Å and 1.2-Å resolution. A comparison of the two structures shows that the extra alanine moves a methionine (M221) out of its normal position, where it forms a bridge over the top of the active site. This single amino acid insertion also lengthens the β5-β6 loop, moving the entire backbone of this region further away from the active site. A model of ceftazidime bound in the active site reveals that these two structural alterations are both likely to relieve steric clashes between the bulky R1 side chain of ceftazidime and OXA-23. With activity against all four classes of β-lactam antibiotics, OXA-146 represents an alarming new threat to the treatment of infections caused by Acinetobacter spp.
    MeSH term(s) Acinetobacter/drug effects ; Acinetobacter/enzymology ; Amino Acid Sequence ; Ampicillin/pharmacology ; Anti-Bacterial Agents/pharmacology ; Aztreonam/pharmacology ; Bacterial Proteins/chemistry ; Bacterial Proteins/metabolism ; Carbapenems/pharmacology ; Cephalosporins/pharmacology ; Crystallography, X-Ray ; Doripenem ; Microbial Sensitivity Tests ; Molecular Sequence Data ; Sequence Homology, Amino Acid ; beta-Lactamases/chemistry ; beta-Lactamases/metabolism
    Chemical Substances Anti-Bacterial Agents ; Bacterial Proteins ; Carbapenems ; Cephalosporins ; Ampicillin (7C782967RD) ; Doripenem (BHV525JOBH) ; beta-Lactamases (EC 3.5.2.6) ; carbapenemase (EC 3.5.2.6) ; Aztreonam (G2B4VE5GH8)
    Language English
    Publishing date 2013-07-22
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 217602-6
    ISSN 1098-6596 ; 0066-4804
    ISSN (online) 1098-6596
    ISSN 0066-4804
    DOI 10.1128/AAC.00762-13
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Structural basis of activity against aztreonam and extended spectrum cephalosporins for two carbapenem-hydrolyzing class D β-lactamases from Acinetobacter baumannii.

    Mitchell, Joshua M / Clasman, Jozlyn R / June, Cynthia M / Kaitany, Kip-Chumba J / LaFleur, James R / Taracila, Magdalena A / Klinger, Neil V / Bonomo, Robert A / Wymore, Troy / Szarecka, Agnieszka / Powers, Rachel A / Leonard, David A

    Biochemistry

    2015  Volume 54, Issue 10, Page(s) 1976–1987

    Abstract: The carbapenem-hydrolyzing class D β-lactamases OXA-23 and OXA-24/40 have emerged worldwide as causative agents for β-lactam antibiotic resistance in Acinetobacter species. Many variants of these enzymes have appeared clinically, including OXA-160 and ... ...

    Abstract The carbapenem-hydrolyzing class D β-lactamases OXA-23 and OXA-24/40 have emerged worldwide as causative agents for β-lactam antibiotic resistance in Acinetobacter species. Many variants of these enzymes have appeared clinically, including OXA-160 and OXA-225, which both contain a P → S substitution at homologous positions in the OXA-24/40 and OXA-23 backgrounds, respectively. We purified OXA-160 and OXA-225 and used steady-state kinetic analysis to compare the substrate profiles of these variants to their parental enzymes, OXA-24/40 and OXA-23. OXA-160 and OXA-225 possess greatly enhanced hydrolytic activities against aztreonam, ceftazidime, cefotaxime, and ceftriaxone when compared to OXA-24/40 and OXA-23. These enhanced activities are the result of much lower Km values, suggesting that the P → S substitution enhances the binding affinity of these drugs. We have determined the structures of the acylated forms of OXA-160 (with ceftazidime and aztreonam) and OXA-225 (ceftazidime). These structures show that the R1 oxyimino side-chain of these drugs occupies a space near the β5-β6 loop and the omega loop of the enzymes. The P → S substitution found in OXA-160 and OXA-225 results in a deviation of the β5-β6 loop, relieving the steric clash with the R1 side-chain carboxypropyl group of aztreonam and ceftazidime. These results reveal worrying trends in the enhancement of substrate spectrum of class D β-lactamases but may also provide a map for β-lactam improvement.
    MeSH term(s) Acinetobacter baumannii/enzymology ; Aztreonam/chemistry ; Bacterial Proteins/chemistry ; Cephalosporins/chemistry ; Hydrolysis ; Kinetics ; Protein Structure, Secondary ; beta-Lactamases/chemistry
    Chemical Substances Bacterial Proteins ; Cephalosporins ; beta-Lactamases (EC 3.5.2.6) ; Aztreonam (G2B4VE5GH8)
    Language English
    Publishing date 2015-03-02
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 1108-3
    ISSN 1520-4995 ; 0006-2960
    ISSN (online) 1520-4995
    ISSN 0006-2960
    DOI 10.1021/bi501547k
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Structural Basis of Activity against Aztreonam and Extended Spectrum Cephalosporins for Two Carbapenem-Hydrolyzing Class D β-Lactamases from Acinetobacter baumannii

    Mitchell, Joshua M / Clasman Jozlyn R / June Cynthia M / Kaitany Kip-Chumba J / LaFleur James R / Taracila Magdalena A / Klinger Neil V / Bonomo Robert A / Wymore Troy / Szarecka Agnieszka / Powers Rachel A / Leonard David A

    Biochemistry. 2015 Mar. 17, v. 54, no. 10

    2015  

    Abstract: The carbapenem-hydrolyzing class D β-lactamases OXA-23 and OXA-24/40 have emerged worldwide as causative agents for β-lactam antibiotic resistance in Acinetobacter species. Many variants of these enzymes have appeared clinically, including OXA-160 and ... ...

    Abstract The carbapenem-hydrolyzing class D β-lactamases OXA-23 and OXA-24/40 have emerged worldwide as causative agents for β-lactam antibiotic resistance in Acinetobacter species. Many variants of these enzymes have appeared clinically, including OXA-160 and OXA-225, which both contain a P → S substitution at homologous positions in the OXA-24/40 and OXA-23 backgrounds, respectively. We purified OXA-160 and OXA-225 and used steady-state kinetic analysis to compare the substrate profiles of these variants to their parental enzymes, OXA-24/40 and OXA-23. OXA-160 and OXA-225 possess greatly enhanced hydrolytic activities against aztreonam, ceftazidime, cefotaxime, and ceftriaxone when compared to OXA-24/40 and OXA-23. These enhanced activities are the result of much lower Kₘ values, suggesting that the P → S substitution enhances the binding affinity of these drugs. We have determined the structures of the acylated forms of OXA-160 (with ceftazidime and aztreonam) and OXA-225 (ceftazidime). These structures show that the R1 oxyimino side-chain of these drugs occupies a space near the β5-β6 loop and the omega loop of the enzymes. The P → S substitution found in OXA-160 and OXA-225 results in a deviation of the β5-β6 loop, relieving the steric clash with the R1 side-chain carboxypropyl group of aztreonam and ceftazidime. These results reveal worrying trends in the enhancement of substrate spectrum of class D β-lactamases but may also provide a map for β-lactam improvement.
    Keywords Acinetobacter baumannii ; antibiotic resistance ; aztreonam ; beta-lactamase ; binding capacity ; ceftazidime ; ceftriaxone ; drugs
    Language English
    Dates of publication 2015-0317
    Size p. 1976-1987.
    Publishing place American Chemical Society
    Document type Article
    ZDB-ID 1108-3
    ISSN 1520-4995 ; 0006-2960
    ISSN (online) 1520-4995
    ISSN 0006-2960
    DOI 10.1021%2Fbi501547k
    Database NAL-Catalogue (AGRICOLA)

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  4. Article: Structural Basis of Activity against Aztreonam and Extended Spectrum Cephalosporins for Two Carbapenem-Hydrolyzing Class D -Lactamases from Acinetobacter baumannii

    Mitchell, Joshua M. / Clasman Jozlyn R.author / June Cynthia M.author / Kaitany Kip-Chumba J.author / LaFleur James R.author / Taracila Magdalena A.authorDepartments of Medicine, Pharmacology, Biochemistry, and Molecular Biology and Microbiology, Case Western Reserve University and Research Service, and Louis Stokes Cleveland Department of Veterans Affairs Medical Center, Cleveland, Ohio 44106, United States / Klinger Neil V.author / Bonomo Robert A.authorDepartments of Medicine, Pharmacology, Biochemistry, and Molecular Biology and Microbiology, Case Western Reserve University and Research Service, and Louis Stokes Cleveland Department of Veterans Affairs Medical Center, Cleveland, Ohio 44106, United States / Wymore TroyauthorUT/ORNL Center for Molecular Biophysics, Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States / Szarecka Agnieszkaauthor / Powers Rachel A.author / Leonard David A.author
    Language English
    Document type Article
    Database AGRIS - International Information System for the Agricultural Sciences and Technology

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