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  1. Article ; Online: Author Correction

    Zhenglin Zhu / Kaiwen Meng / Geng Meng

    Scientific Reports, Vol 11, Iss 1, Pp 1-

    Genomic recombination events may reveal the evolution of coronavirus and the origin of SARS-CoV-2

    2021  Volume 2

    Keywords Medicine ; R ; Science ; Q
    Language English
    Publishing date 2021-11-01T00:00:00Z
    Publisher Nature Portfolio
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article ; Online: Genomic recombination events may reveal the evolution of coronavirus and the origin of SARS-CoV-2

    Zhenglin Zhu / Kaiwen Meng / Geng Meng

    Scientific Reports, Vol 10, Iss 1, Pp 1-

    2020  Volume 10

    Abstract: Abstract To trace the evolution of coronaviruses and reveal the possible origin of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), which causes the coronavirus disease 2019 (COVID-19), we collected and thoroughly analyzed 29,452 ... ...

    Abstract Abstract To trace the evolution of coronaviruses and reveal the possible origin of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), which causes the coronavirus disease 2019 (COVID-19), we collected and thoroughly analyzed 29,452 publicly available coronavirus genomes, including 26,312 genomes of SARS-CoV-2 strains. We observed coronavirus recombination events among different hosts including 3 independent recombination events with statistical significance between some isolates from humans, bats and pangolins. Consistent with previous records, we also detected putative recombination between strains similar or related to Bat-CoV-RaTG13 and Pangolin-CoV-2019. The putative recombination region is located inside the receptor-binding domain (RBD) of the spike glycoprotein (S protein), which may represent the origin of SARS-CoV-2. Population genetic analyses provide estimates suggesting that the putative introduced DNA within the RBD is undergoing directional evolution. This may result in the adaptation of the virus to hosts. Unsurprisingly, we found that the putative recombination region in S protein was highly diverse among strains from bats. Bats harbor numerous coronavirus subclades that frequently participate in recombination events with human coronavirus. Therefore, bats may provide a pool of genetic diversity for the origin of SARS-CoV-2.
    Keywords Medicine ; R ; Science ; Q
    Language English
    Publishing date 2020-12-01T00:00:00Z
    Publisher Nature Portfolio
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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    Inter-library loan at ZB MED

    Your chosen title can be delivered directly to ZB MED Cologne location if you are registered as a user at ZB MED Cologne.

  3. Article ; Online: Lateral Flow Assay for the Detection of African Swine Fever Virus Antibodies Using Gold Nanoparticle-Labeled Acid-Treated p72

    Wenzhuang Zhu / Kaiwen Meng / Yueping Zhang / Zhigao Bu / Dongming Zhao / Geng Meng

    Frontiers in Chemistry, Vol

    2022  Volume 9

    Abstract: African swine fever is a widespread and highly contagious disease in the porcine population, which is caused by African swine fever virus (ASFV). The PCR and ELISA detection methods are the main conventional diagnostic methods for ASFV antigen/antibody ... ...

    Abstract African swine fever is a widespread and highly contagious disease in the porcine population, which is caused by African swine fever virus (ASFV). The PCR and ELISA detection methods are the main conventional diagnostic methods for ASFV antigen/antibody detection in the field. However, these methods have limitations of expensive equipment, trained technicians, and time-consuming results. Thus, a rapid, inexpensive, accurate and on-site detection method is urgently needed. Here we describe a double-antigen-sandwich lateral-flow assay based on gold nanoparticle-conjugated ASFV major capsid protein p72, which can detect ASFV antibody in serum samples with high sensitivity and specificity in 10 min and the results can be determined by naked eyes. A lateral flow assay was established by using yeast-expressed and acid-treated ASFV p72 conjugated with gold nanoparticles, which are synthesized by seeding method. A high coincidence (97.8%) of the assay was determined using clinical serum compared to a commercial ELISA kit. In addition, our lateral flow strip can detect as far as 1:10,000 diluted clinically positive serum for demonstration of high sensitivity. In summary, the assay developed here was shown to be rapid, inexpensive, accurate and highly selective. It represents a reliable method for on-site ASFV antibody detection and may help to control the ASFV pandemic.
    Keywords African swine fever virus ; gold nanoparticle ; lateral flow assay ; p72 ; acid treatment ; Chemistry ; QD1-999
    Language English
    Publishing date 2022-01-01T00:00:00Z
    Publisher Frontiers Media S.A.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article ; Online: Fine Mapping of a Grain Shape Gene from a Rice Landrace Longliheinuo-Dwarf ( Oryza sativa L. ssp. japonica )

    Fei Shang / Xu Chao / Kaiwen Meng / Xianghe Meng / Qin Li / Lifang Chen / Jianfei Wang

    Agronomy, Vol 10, Iss 3, p

    2020  Volume 380

    Abstract: Identification of grain shape genes can facilitate breeding of rice cultivars with optimal grain shape and appearance quality. In this study, we selected two rice germplasms, namely Longliheinuo-dwarf (LH) and N643, with different grain shape, to ... ...

    Abstract Identification of grain shape genes can facilitate breeding of rice cultivars with optimal grain shape and appearance quality. In this study, we selected two rice germplasms, namely Longliheinuo-dwarf (LH) and N643, with different grain shape, to construct a genetic population for quantitative trait locus (QTL) analysis. A major QTL ( qGS7 ), controlling the ratio of grain length to grain width, was mapped on the chromosome 7 in a BC 1 F 4 line. By high-resolution linkage analysis, qGS7 was delimited to a 52.8 kb region including eight predicted genes. Through sequence alignment and real-time PCR expression analysis of these ORFs, ORF3 (LOC_Os07g42410) was selected as the candidate gene for further analysis. Single nucleotide polymorphisms (SNP) diversity analysis of ORF3 revealed that a single nucleotide deletion in the 7th exon resulted in a frameshift in parent LH and the parent in which a premature stop codon was identified. It was a rare mutation that caused grain shape difference. Real-time PCR analyses showed that the expression characteristics of ORF3 was in accordance with the development of spikelets. Of the 18 agronomic traits investigation in qGS7 near isogenic lines (NILs) showed that qGS7 not only changed grain shape but also affected plant height, panicle curvature, panicle length, the length of second leaf from the top, and chalkiness.
    Keywords grain shape ; gene mapping ; nils ; rice ; Agriculture ; S
    Subject code 669
    Language English
    Publishing date 2020-03-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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