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  1. Article ; Online: Unsupervised feature selection based on variance-covariance subspace distance.

    Karami, Saeed / Saberi-Movahed, Farid / Tiwari, Prayag / Marttinen, Pekka / Vahdati, Sahar

    Neural networks : the official journal of the International Neural Network Society

    2023  Volume 166, Page(s) 188–203

    Abstract: Subspace distance is an invaluable tool exploited in a wide range of feature selection methods. The power of subspace distance is that it can identify a representative subspace, including a group of features that can efficiently approximate the space of ... ...

    Abstract Subspace distance is an invaluable tool exploited in a wide range of feature selection methods. The power of subspace distance is that it can identify a representative subspace, including a group of features that can efficiently approximate the space of original features. On the other hand, employing intrinsic statistical information of data can play a significant role in a feature selection process. Nevertheless, most of the existing feature selection methods founded on the subspace distance are limited in properly fulfilling this objective. To pursue this void, we propose a framework that takes a subspace distance into account which is called "Variance-Covariance subspace distance". The approach gains advantages from the correlation of information included in the features of data, thus determines all the feature subsets whose corresponding Variance-Covariance matrix has the minimum norm property. Consequently, a novel, yet efficient unsupervised feature selection framework is introduced based on the Variance-Covariance distance to handle both the dimensionality reduction and subspace learning tasks. The proposed framework has the ability to exclude those features that have the least variance from the original feature set. Moreover, an efficient update algorithm is provided along with its associated convergence analysis to solve the optimization side of the proposed approach. An extensive number of experiments on nine benchmark datasets are also conducted to assess the performance of our method from which the results demonstrate its superiority over a variety of state-of-the-art unsupervised feature selection methods. The source code is available at https://github.com/SaeedKarami/VCSDFS.
    MeSH term(s) Pattern Recognition, Automated/methods ; Algorithms ; Learning ; Software ; Benchmarking
    Language English
    Publishing date 2023-06-24
    Publishing country United States
    Document type Journal Article
    ZDB-ID 740542-x
    ISSN 1879-2782 ; 0893-6080
    ISSN (online) 1879-2782
    ISSN 0893-6080
    DOI 10.1016/j.neunet.2023.06.018
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Decoding Clinical Biomarker Space of COVID-19: Exploring Matrix Factorization-based Feature Selection Methods.

    Saberi-Movahed, Farshad / Mohammadifard, Mahyar / Mehrpooya, Adel / Rezaei-Ravari, Mohammad / Berahmand, Kamal / Rostami, Mehrdad / Karami, Saeed / Najafzadeh, Mohammad / Hajinezhad, Davood / Jamshidi, Mina / Abedi, Farshid / Mohammadifard, Mahtab / Farbod, Elnaz / Safavi, Farinaz / Dorvash, Mohammadreza / Vahedi, Shahrzad / Eftekhari, Mahdi / Saberi-Movahed, Farid / Tavassoly, Iman

    medRxiv : the preprint server for health sciences

    2021  

    Abstract: One of the most critical challenges in managing complex diseases like COVID-19 is to establish an intelligent triage system that can optimize the clinical decision-making at the time of a global pandemic. The clinical presentation and patients’ ... ...

    Abstract One of the most critical challenges in managing complex diseases like COVID-19 is to establish an intelligent triage system that can optimize the clinical decision-making at the time of a global pandemic. The clinical presentation and patients’ characteristics are usually utilized to identify those patients who need more critical care. However, the clinical evidence shows an unmet need to determine more accurate and optimal clinical biomarkers to triage patients under a condition like the COVID-19 crisis. Here we have presented a machine learning approach to find a group of clinical indicators from the blood tests of a set of COVID-19 patients that are predictive of poor prognosis and morbidity. Our approach consists of two interconnected schemes: Feature Selection and Prognosis Classification. The former is based on different Matrix Factorization (MF)-based methods, and the latter is performed using Random Forest algorithm. Our model reveals that Arterial Blood Gas (ABG) O
    Language English
    Publishing date 2021-07-09
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2021.07.07.21259699
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Decoding clinical biomarker space of COVID-19: Exploring matrix factorization-based feature selection methods.

    Saberi-Movahed, Farshad / Mohammadifard, Mahyar / Mehrpooya, Adel / Rezaei-Ravari, Mohammad / Berahmand, Kamal / Rostami, Mehrdad / Karami, Saeed / Najafzadeh, Mohammad / Hajinezhad, Davood / Jamshidi, Mina / Abedi, Farshid / Mohammadifard, Mahtab / Farbod, Elnaz / Safavi, Farinaz / Dorvash, Mohammadreza / Mottaghi-Dastjerdi, Negar / Vahedi, Shahrzad / Eftekhari, Mahdi / Saberi-Movahed, Farid /
    Alinejad-Rokny, Hamid / Band, Shahab S / Tavassoly, Iman

    Computers in biology and medicine

    2022  Volume 146, Page(s) 105426

    Abstract: One of the most critical challenges in managing complex diseases like COVID-19 is to establish an intelligent triage system that can optimize the clinical decision-making at the time of a global pandemic. The clinical presentation and patients' ... ...

    Abstract One of the most critical challenges in managing complex diseases like COVID-19 is to establish an intelligent triage system that can optimize the clinical decision-making at the time of a global pandemic. The clinical presentation and patients' characteristics are usually utilized to identify those patients who need more critical care. However, the clinical evidence shows an unmet need to determine more accurate and optimal clinical biomarkers to triage patients under a condition like the COVID-19 crisis. Here we have presented a machine learning approach to find a group of clinical indicators from the blood tests of a set of COVID-19 patients that are predictive of poor prognosis and morbidity. Our approach consists of two interconnected schemes: Feature Selection and Prognosis Classification. The former is based on different Matrix Factorization (MF)-based methods, and the latter is performed using Random Forest algorithm. Our model reveals that Arterial Blood Gas (ABG) O
    MeSH term(s) Biomarkers ; COVID-19 ; Humans ; Machine Learning ; Pandemics ; Triage/methods
    Chemical Substances Biomarkers
    Language English
    Publishing date 2022-04-05
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Intramural ; Research Support, Non-U.S. Gov't ; Research Support, N.I.H., Extramural ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 127557-4
    ISSN 1879-0534 ; 0010-4825
    ISSN (online) 1879-0534
    ISSN 0010-4825
    DOI 10.1016/j.compbiomed.2022.105426
    Database MEDical Literature Analysis and Retrieval System OnLINE

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