LIVIVO - The Search Portal for Life Sciences

zur deutschen Oberfläche wechseln
Advanced search

Search results

Result 1 - 10 of total 159

Search options

  1. Article ; Online: Genetic control of branching patterns in grass inflorescences.

    Kellogg, Elizabeth A

    The Plant cell

    2022  Volume 34, Issue 7, Page(s) 2518–2533

    Abstract: Inflorescence branching in the grasses controls the number of florets and hence the number of seeds. Recent data on the underlying genetics come primarily from rice and maize, although new data are accumulating in other systems as well. This review ... ...

    Abstract Inflorescence branching in the grasses controls the number of florets and hence the number of seeds. Recent data on the underlying genetics come primarily from rice and maize, although new data are accumulating in other systems as well. This review focuses on a window in developmental time from the production of primary branches by the inflorescence meristem through to the production of glumes, which indicate the transition to producing a spikelet. Several major developmental regulatory modules appear to be conserved among most or all grasses. Placement and development of primary branches are controlled by conserved auxin regulatory genes. Subtending bracts are repressed by a network including TASSELSHEATH4, and axillary branch meristems are regulated largely by signaling centers that are adjacent to but not within the meristems themselves. Gradients of SQUAMOSA-PROMOTER BINDING-like and APETALA2-like proteins and their microRNA regulators extend along the inflorescence axis and the branches, governing the transition from production of branches to production of spikelets. The relative speed of this transition determines the extent of secondary and higher order branching. This inflorescence regulatory network is modified within individual species, particularly as regards formation of secondary branches. Differences between species are caused both by modifications of gene expression and regulators and by presence or absence of critical genes. The unified networks described here may provide tools for investigating orphan crops and grasses other than the well-studied maize and rice.
    MeSH term(s) Gene Expression Regulation, Plant/genetics ; Inflorescence ; Meristem/metabolism ; Oryza/metabolism ; Plant Proteins/genetics ; Plant Proteins/metabolism ; Poaceae/genetics ; Poaceae/metabolism ; Zea mays/metabolism
    Chemical Substances Plant Proteins
    Language English
    Publishing date 2022-03-08
    Publishing country England
    Document type Journal Article ; Review ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 623171-8
    ISSN 1532-298X ; 1040-4651
    ISSN (online) 1532-298X
    ISSN 1040-4651
    DOI 10.1093/plcell/koac080
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  2. Article ; Online: The rachis cannot hold, plants fall apart. A commentary on: 'The unique disarticulation layer formed in the rachis of Aegilops longissima likely results from the spatial co-expression of Btr1 and Btr2'.

    Kellogg, Elizabeth A

    Annals of botany

    2020  Volume 127, Issue 3, Page(s) vi–vii

    MeSH term(s) Aegilops ; Disarticulation ; Genes, Plant ; Hordeum/genetics
    Language English
    Publishing date 2020-12-17
    Publishing country England
    Document type Journal Article ; Comment
    ZDB-ID 1461328-1
    ISSN 1095-8290 ; 0305-7364
    ISSN (online) 1095-8290
    ISSN 0305-7364
    DOI 10.1093/aob/mcaa194
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  3. Article ; Online: Diverse ecological functions and the convergent evolution of grass awns.

    Petersen, Kurt B / Kellogg, Elizabeth A

    American journal of botany

    2022  Volume 109, Issue 9, Page(s) 1331–1345

    Abstract: The awn of grasses is a long, conspicuous outgrowth of the floral bracts in a grass spikelet. It is known to impact agricultural yield, but we know little about its broader ecological function, nor the selective forces that lead to its evolution. Grass ... ...

    Abstract The awn of grasses is a long, conspicuous outgrowth of the floral bracts in a grass spikelet. It is known to impact agricultural yield, but we know little about its broader ecological function, nor the selective forces that lead to its evolution. Grass awns are phenotypically diverse across the extant ~12,000 species of Poaceae. Awns have been lost and gained repeatedly over evolutionary time, between and within lineages, suggesting that they could be under selection and might provide adaptive benefit in some environments. Despite the phylogenetic context, we know of no studies that have tested whether the origin of awns correlates with putative selective forces on their form and function. Presence or absence of awns is not plastic; rather, heritability is high. The awns of grasses often are suggested as adaptations for dispersal, and most experimental work has been aimed at testing this hypothesis. Proposed dispersal functions include soil burial, epizoochory, and aerial orientation. Awns may also protect the seed from drought, herbivores, or fire by helping it become buried in soil. We do not fully understand the fitness or nutrient costs of awn production, but in some species awns function in photosynthesis, providing carbon to the seed. Here we show that awns likely provide an adaptive advantage, but argue that studies on awn function have lacked critical phylogenetic information to demonstrate adaptive convergent evolution, are taxonomically biased, and often lack clear alternative hypotheses.
    MeSH term(s) Carbon ; Phylogeny ; Poaceae/genetics ; Seeds ; Soil
    Chemical Substances Soil ; Carbon (7440-44-0)
    Language English
    Publishing date 2022-09-26
    Publishing country United States
    Document type Journal Article ; Review ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 2935-x
    ISSN 1537-2197 ; 0002-9122
    ISSN (online) 1537-2197
    ISSN 0002-9122
    DOI 10.1002/ajb2.16060
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  4. Article ; Online: Different ways to be redundant.

    Kellogg, Elizabeth A

    Nature genetics

    2019  Volume 51, Issue 5, Page(s) 770–771

    MeSH term(s) Arabidopsis/genetics ; Arabidopsis Proteins/genetics ; Conserved Sequence ; Gene Expression Regulation, Plant ; Gene Regulatory Networks ; Genes, Plant ; Ligands ; Lycopersicon esculentum/genetics ; Mutation ; Plants/genetics ; Protein-Serine-Threonine Kinases/genetics ; Zea mays/genetics
    Chemical Substances AT2G27250 protein, Arabidopsis ; Arabidopsis Proteins ; Ligands ; CLV1 protein, Arabidopsis (EC 2.7.11.1) ; Protein-Serine-Threonine Kinases (EC 2.7.11.1)
    Language English
    Publishing date 2019-05-01
    Publishing country United States
    Document type News
    ZDB-ID 1108734-1
    ISSN 1546-1718 ; 1061-4036
    ISSN (online) 1546-1718
    ISSN 1061-4036
    DOI 10.1038/s41588-019-0406-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  5. Article ; Online: Molecular, cellular, and developmental foundations of grass diversity.

    McSteen, Paula / Kellogg, Elizabeth A

    Science (New York, N.Y.)

    2022  Volume 377, Issue 6606, Page(s) 599–602

    Abstract: Humans have cultivated grasses for food, feed, beverages, and construction materials for millennia. Grasses also dominate the landscape in vast parts of the world, where they have adapted morphologically and physiologically, diversifying to form ~12,000 ... ...

    Abstract Humans have cultivated grasses for food, feed, beverages, and construction materials for millennia. Grasses also dominate the landscape in vast parts of the world, where they have adapted morphologically and physiologically, diversifying to form ~12,000 species. Sequences of hundreds of grass genomes show that they are essentially collinear; nonetheless, not all species have the same complement of genes. Here, we focus on the molecular, cellular, and developmental bases of grain yield and dispersal-traits that are essential for domestication. Distinct genes, networks, and pathways were selected in different crop species, reflecting underlying genomic diversity. With increasing genomic resources becoming available in nondomesticated species, we anticipate advances in coming years that illuminate the ecological and economic success of the grasses.
    MeSH term(s) Domestication ; Edible Grain/cytology ; Edible Grain/genetics ; Genetic Variation ; Genomics ; Humans ; Phenotype ; Poaceae/cytology ; Poaceae/genetics
    Language English
    Publishing date 2022-08-04
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 128410-1
    ISSN 1095-9203 ; 0036-8075
    ISSN (online) 1095-9203
    ISSN 0036-8075
    DOI 10.1126/science.abo5035
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  6. Article ; Online: Has the connection between polyploidy and diversification actually been tested?

    Kellogg, Elizabeth A

    Current opinion in plant biology

    2016  Volume 30, Page(s) 25–32

    Abstract: Many major clades of angiosperms have several whole genome duplications (polyploidization events) in their distant past, suggesting that polyploidy drives or at least permits diversification. However, data on recently diverged groups are more equivocal, ... ...

    Abstract Many major clades of angiosperms have several whole genome duplications (polyploidization events) in their distant past, suggesting that polyploidy drives or at least permits diversification. However, data on recently diverged groups are more equivocal, finding little evidence of elevated diversification following polyploidy. The discrepancy may be attributable at least in part to methodology. Many studies use indirect methods, such as chromosome numbers, genome size, and Ks plots, to test polyploidy, although these approaches can be misleading, and often lack sufficient resolution. A direct test of diversification following polyploidy requires a sequence-based approach that traces the history of nuclear genomes rather than species. These methods identify the point of coalescence of ancestral genomes, but may be misleading about the time and thus the extent of diversification. Limitations of existing methods mean that the connection between polyploidy and diversification has not been rigorously tested and remains unknown.
    MeSH term(s) Evolution, Molecular ; Genome, Plant/genetics ; Magnoliopsida/classification ; Magnoliopsida/genetics ; Phylogeny ; Polyploidy
    Language English
    Publishing date 2016-04
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 1418472-2
    ISSN 1879-0356 ; 1369-5266
    ISSN (online) 1879-0356
    ISSN 1369-5266
    DOI 10.1016/j.pbi.2016.01.002
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  7. Article ; Online: The YABBY gene SHATTERING1 controls activation rather than patterning of the abscission zone in Setaria viridis.

    Yu, Yunqing / Hu, Hao / Voytas, Daniel F / Doust, Andrew N / Kellogg, Elizabeth A

    The New phytologist

    2023  Volume 240, Issue 2, Page(s) 846–862

    Abstract: Abscission is predetermined in specialized cell layers called the abscission zone (AZ) and activated by developmental or environmental signals. In the grass family, most identified AZ genes regulate AZ anatomy, which differs among lineages. A YABBY ... ...

    Abstract Abscission is predetermined in specialized cell layers called the abscission zone (AZ) and activated by developmental or environmental signals. In the grass family, most identified AZ genes regulate AZ anatomy, which differs among lineages. A YABBY transcription factor, SHATTERING1 (SH1), is a domestication gene regulating abscission in multiple cereals, including rice and Setaria. In rice, SH1 inhibits lignification specifically in the AZ. However, the AZ of Setaria is nonlignified throughout, raising the question of how SH1 functions in species without lignification. Crispr-Cas9 knockout mutants of SH1 were generated in Setaria viridis and characterized with histology, cell wall and auxin immunofluorescence, transmission electron microscopy, hormonal treatment and RNA-Seq analysis. The sh1 mutant lacks shattering, as expected. No differences in cell anatomy or cell wall components including lignin were observed between sh1 and the wild-type (WT) until abscission occurs. Chloroplasts degenerated in the AZ of WT before abscission, but degeneration was suppressed by auxin treatment. Auxin distribution and expression of auxin-related genes differed between WT and sh1, with the signal of an antibody to auxin detected in the sh1 chloroplast. SH1 in Setaria is required for activation of abscission through auxin signaling, which is not reported in other grass species.
    MeSH term(s) Setaria Plant/genetics ; Setaria Plant/metabolism ; Indoleacetic Acids/metabolism ; Transcription Factors/metabolism ; Oryza/metabolism ; Gene Expression Regulation, Plant
    Chemical Substances Indoleacetic Acids ; Transcription Factors
    Language English
    Publishing date 2023-08-02
    Publishing country England
    Document type Journal Article ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 208885-x
    ISSN 1469-8137 ; 0028-646X
    ISSN (online) 1469-8137
    ISSN 0028-646X
    DOI 10.1111/nph.19157
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  8. Article ; Online: Brachypodium distachyon as a Genetic Model System.

    Kellogg, Elizabeth A

    Annual review of genetics

    2015  Volume 49, Page(s) 1–20

    Abstract: Brachypodium distachyon has emerged as a powerful model system for studying the genetics of flowering plants. Originally chosen for its phylogenetic proximity to the large-genome cereal crops wheat and barley, it is proving to be useful for more than ... ...

    Abstract Brachypodium distachyon has emerged as a powerful model system for studying the genetics of flowering plants. Originally chosen for its phylogenetic proximity to the large-genome cereal crops wheat and barley, it is proving to be useful for more than simply providing markers for comparative mapping. Studies in B. distachyon have provided new insight into the structure and physiology of plant cell walls, the development and chemical composition of endosperm, and the genetic basis for cold tolerance. Recent work on auxin transport has uncovered mechanisms that apply to all angiosperms other than Arabidopsis. In addition to the areas in which it is currently used, B. distachyon is uniquely suited for studies of floral development, vein patterning, the controls of the perennial versus annual habit, and genome organization.
    MeSH term(s) Brachypodium/genetics ; Brachypodium/physiology ; Cell Wall/genetics ; Cell Wall/metabolism ; Cloning, Molecular ; Cold Temperature ; Endosperm/chemistry ; Endosperm/genetics ; Flowers/genetics ; Gene Expression Regulation, Plant ; Genome, Plant ; Phylogeny
    Language English
    Publishing date 2015
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 207928-8
    ISSN 1545-2948 ; 0066-4170 ; 0066-4197
    ISSN (online) 1545-2948
    ISSN 0066-4170 ; 0066-4197
    DOI 10.1146/annurev-genet-112414-055135
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  9. Article ; Online: Genome sequencing: Long reads for a short plant.

    Kellogg, Elizabeth A

    Nature plants

    2015  Volume 1, Page(s) 15169

    Language English
    Publishing date 2015-11-11
    Publishing country England
    Document type Journal Article
    ISSN 2055-0278
    ISSN (online) 2055-0278
    DOI 10.1038/nplants.2015.169
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  10. Article ; Online: Plant structure and function: Evolutionary origins and underlying mechanisms.

    Preston, Jill C / Sinha, Neelima R / Torii, Keiko U / Kellogg, Elizabeth A

    Plant physiology

    2022  Volume 190, Issue 1, Page(s) 1–4

    MeSH term(s) Biological Evolution ; Evolution, Molecular ; Plant Structures
    Language English
    Publishing date 2022-07-24
    Publishing country United States
    Document type Editorial
    ZDB-ID 208914-2
    ISSN 1532-2548 ; 0032-0889
    ISSN (online) 1532-2548
    ISSN 0032-0889
    DOI 10.1093/plphys/kiac320
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

To top