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Article: AJEDI in Science: Leveraging Instructor Communities to Create Antiracist Curricula.

Miller, Sarah / Kerr, Jennifer E / Handelsman, Jo

Journal of microbiology & biology education

2022 Volume 23, Issue 1

Abstract: Gateway college science courses continue to exclude students from science, disproportionately discriminating against students of color. As the higher education system strives to reduce discrimination, we need a deliberate, iterative process to modify, ... ...

Abstract	Gateway college science courses continue to exclude students from science, disproportionately discriminating against students of color. As the higher education system strives to reduce discrimination, we need a deliberate, iterative process to modify, supplement, or replace current modalities. By incorporating antiracist, just, equitable, diverse, and inclusive (AJEDI) principles throughout course design, instructors create learning environments that provide an antidote to historically oppressive systems. In this paper, we describe how a community of microbiology instructors who all teach Tiny Earth, a course-based undergraduate research experience, created and rapidly integrated antiracist content and pivoted to an online format in response to the social unrest and pandemic of 2020. The effort strengthened an existing teaching community of practice and produced collective change in classrooms across the nation. We provide a perspective on how instructor communities of practice can be leveraged to design and disseminate AJEDI curriculum.
Language	English
Publishing date	2022-04-11
Publishing country	United States
Document type	Journal Article
ISSN	1935-7877
ISSN	1935-7877
DOI	10.1128/jmbe.00248-21
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Article: Teaching "Crafty Microbiology": Safely Teaching Hands-On Microbiology Skills at Home.

Estes, Anne M / Jozwick, Anna S / Kerr, Jennifer E

Journal of microbiology & biology education

2021 Volume 22, Issue 1

Abstract: Using nontoxic craft items and disposable lab consumables, we have developed nine modules to teach fundamental, hands-on microbiology lab skills safely at home. These "Crafty" teaching modules can be paired with virtual instruction and/or data collected ... ...

Abstract	Using nontoxic craft items and disposable lab consumables, we have developed nine modules to teach fundamental, hands-on microbiology lab skills safely at home. These "Crafty" teaching modules can be paired with virtual instruction and/or data collected by an instructor to replicate traditional microbiology lab exercises that characterize an unknown microbe. Materials and procedures used were carefully chosen to best mimic the texture of media, represent microbial diversity, assess aseptic technique, and produce analyzable data from results. Some protocols build upon and extend previously unpublished ideas, while others provide novel methods. The lab skills include proper personal protective equipment usage and basic biosafety, aseptic technique, microscopy and staining, streaking for isolation, spread plating, serial dilutions, filtering, disk diffusion method, and modeling an epidemic. Each protocol includes a student handout with background, links to videos of the methods performed with microbes, a rationale for the pairing of craft and consumable lab supplies along with technique used, a video or image demonstration of the "Crafty" technique when needed, postlab questions, and an instructor guide. This resource was developed for an undergraduate microbiology course, and each lab is aligned with learning outcomes within the American Society for Microbiology's undergraduate curriculum guidelines. This work would also be useful for outreach and K-12 educators. The development of microbiology lab skills by all students, regardless of economic or health status, will lead to a more scientifically minded society.
Language	English
Publishing date	2021-03-31
Publishing country	United States
Document type	Journal Article
ISSN	1935-7877
ISSN	1935-7877
DOI	10.1128/jmbe.v22i1.2345
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Article ; Online: Small bowel imaging: CT enteroclysis or barium enteroclysis? Critically appraised topic.

Kerr, Jennifer M

Abdominal imaging

2008 Volume 33, Issue 1, Page(s) 31–33

Abstract: Barium enteroclysis has been traditionally used in the diagnosis of small bowel Crohn's disease. Recently CT enteroclysis has been developed as an alternative imaging technique for small bowel Crohn's disease. A search and critical appraisal of the ... ...

Abstract	Barium enteroclysis has been traditionally used in the diagnosis of small bowel Crohn's disease. Recently CT enteroclysis has been developed as an alternative imaging technique for small bowel Crohn's disease. A search and critical appraisal of the literature was performed to determine which technique is better for diagnosis of Crohn's disease. The best current evidence indicates that CT enteroclysis is a good test for the diagnosis of Crohn's disease but barium enteroclysis may also be required in a small group of patients.
MeSH term(s)	Barium Sulfate ; Contrast Media ; Crohn Disease/diagnostic imaging ; Enema ; Evidence-Based Medicine ; Humans ; Intestine, Small ; Predictive Value of Tests ; Tomography, X-Ray Computed/methods
Chemical Substances	Contrast Media ; Barium Sulfate (25BB7EKE2E)
Language	English
Publishing date	2008-01
Publishing country	United States
Document type	Journal Article ; Review
ZDB-ID	1144553-1
ISSN	1432-0509 ; 0942-8925
ISSN (online)	1432-0509
ISSN	0942-8925
DOI	10.1007/s00261-007-9303-4
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Article: Sustainability reporting integrated into management control systems

Kerr, Jennifer / De Villiers, Charl de / Rouse, Paul

Pacific accounting review Vol. 27, No. 2 , p. 189-207

2015 Volume 27, Issue 2, Page(s) 189–207

Author's details	Jennifer Kerr and Paul Rouse; Charl de Villiers
Keywords	Balanced scorecard ; Triple bottom line ; Sustainability reporting ; Management control systems
Language	English
Size	graph. Darst.
Publisher	Emerald
Publishing place	Bingley [u.a.]
Document type	Article
ZDB-ID	2473941-8
ISSN	0114-0582
Database	ECONomics Information System

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Article ; Online: The OCT RNFL Probability Map and Artifacts Resembling Glaucomatous Damage.

La Bruna, Sol / Rai, Anvit / Mao, Grace / Kerr, Jennifer / Amin, Heer / Zemborain, Zane Z / Leshno, Ari / Tsamis, Emmanouil / De Moraes, Carlos Gustavo / Hood, Donald C

Translational vision science & technology

2022 Volume 11, Issue 3, Page(s) 18

Abstract: Purpose: The purpose of this study was to improve the diagnostic ability of the optical coherence tomography (OCT) retinal nerve fiber layer (RNFL) probability (p-) map by understanding the frequency and pattern of artifacts seen on the p-maps of ... ...

Abstract	Purpose: The purpose of this study was to improve the diagnostic ability of the optical coherence tomography (OCT) retinal nerve fiber layer (RNFL) probability (p-) map by understanding the frequency and pattern of artifacts seen on the p-maps of healthy control (HC) eyes resembling glaucomatous damage. Methods: RNFL p-maps were generated from wide-field OCT cube scans of 2 groups of HC eyes, 200 from a commercial normative group (HC-norm) and 54 from a prospective study group, as well as from 62 patient eyes, which included 32 with early glaucoma (EG). These 32 EG eyes had 24-2 mean deviation (MD) better than -6 dB and perimetric glaucoma as defined by 24-2 and 10-2 criteria. For the HC groups, "glaucoma-like" arcuates were defined as any red region near the temporal half of the disc. Results: Seven percent of the 200 HC-norm and 11% of the 54 HC RNFL p-maps satisfied the definition of "glaucoma-like," as did all the patients' p-maps. The HC p-maps showed two general patterns of abnormal regions, "arcuate" and "temporal quadrant," and these patterns resembled those seen on some of the RNFL p-maps of the EG eyes. A "vertical midline" rule, which required the abnormal region to cross the vertical midline through the fovea, had a specificity of >99%, and a sensitivity of 75% for EG and 93% for moderate to advanced eyes. Conclusions: Glaucoma-like artifacts on RNFL p-maps are relatively common and can masquerade as arcuate and/or widespread/temporal damage. Translational relevance: A vertical midline rule had excellent specificity. However, other OCT information is necessary to obtain high sensitivity, especially in eyes with early glaucoma.
MeSH term(s)	Artifacts ; Cross-Sectional Studies ; Glaucoma/diagnosis ; Humans ; Intraocular Pressure ; Nerve Fibers ; Probability ; Prospective Studies ; Retinal Ganglion Cells ; Tomography, Optical Coherence/methods
Language	English
Publishing date	2022-03-19
Publishing country	United States
Document type	Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
ZDB-ID	2674602-5
ISSN	2164-2591 ; 2164-2591
ISSN (online)	2164-2591
ISSN	2164-2591
DOI	10.1167/tvst.11.3.18
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Article ; Online: Clinically guided core biopsy and cutaneous punch biopsy in the evaluation of breast lesions: a necessary test or an obsolete skill?

Alameer, Aqeel / Common, Matthew / Elwahab, Sami Abd / Boland, Michael / Allen, Michael / Power, Colm / Hambly, Niamh / Kerr, Jennifer / Ni Mhuircheartaigh, Neasa / Staunton, Marie / Hill, Arnold D K / Duke, Deirdre

Irish journal of medical science

2022 Volume 192, Issue 1, Page(s) 317–319

Abstract: Objective: The vast majority of breast cancers are diagnosed via image-guided procedures yet despite significant advances, imaging does not identify all breast malignancies. Clinically suspicious breast lesions with normal breast imaging remain a cause ... ...

Abstract	Objective: The vast majority of breast cancers are diagnosed via image-guided procedures yet despite significant advances, imaging does not identify all breast malignancies. Clinically suspicious breast lesions with normal breast imaging remain a cause for concern. The aim of this study is to determine the diagnostic value of clinical core and cutaneous punch biopsies in the diagnosis of breast malignancy in clinically suspicious lesions with normal breast imaging. Methods: All patients with suspicious clinical breast findings and normal imaging who underwent a clinical core and/or cutaneous punch biopsy from 2012 to 2019 were reviewed retrospectively. Patients with subsequent breast malignant diagnosis were analysed. Results: A total of 283 biopsies (166 clinical core, 117 cutaneous punch) performed over the 7-year period were included in the analysis. A total of 263/283 (93%) yielded a benign outcome. A total of 2/283 (0.7%) yielded B3 lesions (probably benign). These lesions were benign on final surgical excision. A total of 18/283 (6.3%) yielded a malignant histopathology. Sixteen out of 18 were cutaneous punch biopsies, and 2/18 were clinical core biopsies. A total of 14/18 patients presented with nipple changes, while 4/18 had a palpable area of concern. Histopathological analysis demonstrated Paget's disease of the nipple in 8/18, invasive carcinoma in 9/18 out of which two represented a recurrence of breast malignancy. Cutaneous squamous cell carcinoma was diagnosed in 1/18. Conclusion: Clinical core and cutaneous punch biopsies remain a valuable tool in the diagnosis of breast cancer particularly in the management of clinically suspicious radiographically occult malignancies.
MeSH term(s)	Humans ; Female ; Mammography ; Carcinoma, Squamous Cell ; Retrospective Studies ; Skin Neoplasms ; Biopsy ; Breast Neoplasms/pathology ; Biopsy, Large-Core Needle
Language	English
Publishing date	2022-02-08
Publishing country	Ireland
Document type	Journal Article
ZDB-ID	390895-1
ISSN	1863-4362 ; 0021-1265
ISSN (online)	1863-4362
ISSN	0021-1265
DOI	10.1007/s11845-022-02937-8
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Article ; Online: Value of Long-term Follow-up in Surgically Excised Lesions of Uncertain Malignant Potential in the Breast - Is 5 Years Necessary?

Hennessy, Grace / Boland, Michael R / Bambrick, Marie / Crone, Lauren / Lloyd, Angus / Abdelwahab, Sami / Downey, Eithne / Staunton, Marie / Hambly, Niamh / Mhuircheartaigh, Neasa Ni / Kerr, Jennifer / Power, Colm / Duke, Deirdre / Hill, Arnold Dk

Clinical breast cancer

2022 Volume 22, Issue 7, Page(s) 699–704

Abstract: Introduction: B3 lesions are a heterogeneous group of breast lesions of uncertain malignant potential which usually require excision. The aim was to assess the efficacy of 5 years routine radiological or clinical follow-up of patients who had "high-risk" ...

Abstract	Introduction: B3 lesions are a heterogeneous group of breast lesions of uncertain malignant potential which usually require excision. The aim was to assess the efficacy of 5 years routine radiological or clinical follow-up of patients who had "high-risk" B3 lesions surgically excised, by analyzing recurrence and subsequent development of invasive/in-situ cancer. Patients and methods: A 10-year retrospective review from 2010 to 2019 was performed of B3 lesions diagnosed on core needle biopsy, including patients who proceeded to surgical excision with a high-risk lesion on final histology. The database recorded 6 specific B3 lesion categories: 1. Atypical ductal hyperplasia (ADH), 2. Radial scars/complex sclerosing lesions (CSLs) with epithelial atypia 3. Classical Lobular neoplasia (ALH/LCIS), 4. Papillary lesions with epithelial atypia, 5. Mixed, 6. Flat epithelial atypia (FEA), including radiological and clinical follow-up data. Results: Six hundred sixteen patients had a B3 lesion after core biopsy. 110 patients had "high risk" lesions. This included 17 (15.5%) Atypical Ductal Hyperplasia (ADH), 22 (20%) radial scars/CSLs with epithelial atypia, 47 (42.7%) classical lobular neoplasia (LCIS/ALH), 7 (6.4%) papillary lesions with epithelial atypia, 13 (11.8%) mixed lesions & 4 (3.6%) Flat Epithelial Atypia (FEA) lesions. 4 of 110 (3.6%) developed invasive/in-situ disease and 4 of 110 (3.6%) developed recurrence during follow-up. 33 of 616 (5.4%) upgraded to invasive/preinvasive disease after surgical excision. Conclusion: Five years of routine radiological surveillance may not be necessary in patients who undergo surgical excision of "high-risk" B3 lesions. Clinical surveillance appears to be of little benefit, especially in patients with radial scars, papillary lesions, and FEA. Subsequent development of invasive/in-situ disease in patients who undergo surgical excision of atypical B3 lesions remains low.
MeSH term(s)	Biopsy, Large-Core Needle ; Breast/diagnostic imaging ; Breast/pathology ; Breast/surgery ; Breast Neoplasms/pathology ; Breast Neoplasms/surgery ; Carcinoma in Situ ; Carcinoma, Intraductal, Noninfiltrating/pathology ; Cicatrix/etiology ; Female ; Fibrocystic Breast Disease/pathology ; Follow-Up Studies ; Humans ; Mammography ; Precancerous Conditions/pathology ; Retrospective Studies
Language	English
Publishing date	2022-06-02
Publishing country	United States
Document type	Journal Article
ZDB-ID	2106734-X
ISSN	1938-0666 ; 1526-8209
ISSN (online)	1938-0666
ISSN	1526-8209
DOI	10.1016/j.clbc.2022.05.009
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Article ; Online: Evidence for VirB4-mediated dislocation of membrane-integrated VirB2 pilin during biogenesis of the Agrobacterium VirB/VirD4 type IV secretion system.

Kerr, Jennifer E / Christie, Peter J

Journal of bacteriology

2010 Volume 192, Issue 19, Page(s) 4923–4934

Abstract: Agrobacterium VirB2 pilin is required for assembly of the VirB/VirD4 type IV secretion system (T4SS). The propilin is processed by signal sequence cleavage and covalent linkage of the N and C termini, and the cyclized pilin integrates into the inner ... ...

Abstract	Agrobacterium VirB2 pilin is required for assembly of the VirB/VirD4 type IV secretion system (T4SS). The propilin is processed by signal sequence cleavage and covalent linkage of the N and C termini, and the cyclized pilin integrates into the inner membrane (IM) as a pool for assembly of the secretion channel and T pilus. Here, by use of the substituted cysteine accessibility method (SCAM), we defined the VirB2 IM topology and then identified distinct contributions of the T4SS ATPase subunits to the pilin structural organization. Labeling patterns of Cys-substituted pilins exposed to the membrane-impermeative, thiol-reactive reagent 3-(N-maleimidopropionyl)biocytin (MPB) supported a topology model in which two hydrophobic stretches comprise transmembrane domains, an intervening hydrophilic loop (residues 90 to 94) is cytoplasmic, and the hydrophilic N and C termini joined at residues 48 and 121 form a periplasmic loop. Interestingly, the VirB4 ATPase, but not a Walker A nucleoside triphosphate (NTP) binding motif mutant, induced (i) MPB labeling of Cys94, a residue that in the absence of the ATPase is located in the cytoplasmic loop, and (ii) release of pilin from the IM upon osmotic shock. These findings, coupled with evidence for VirB2-VirB4 complex formation by coimmunoprecipitation, support a model in which VirB4 functions as a dislocation motor to extract pilins from the IM during T4SS biogenesis. The VirB11 ATPase functioned together with VirB4 to induce a structural change in the pilin that was detectable by MPB labeling, suggestive of a role for VirB11 as a modulator of VirB4 dislocase activity.
MeSH term(s)	Agrobacterium tumefaciens/genetics ; Agrobacterium tumefaciens/metabolism ; Agrobacterium tumefaciens/ultrastructure ; Bacterial Proteins/genetics ; Bacterial Proteins/metabolism ; Fimbriae Proteins/genetics ; Fimbriae Proteins/metabolism ; Immunoblotting ; Immunoprecipitation ; Kalanchoe/microbiology ; Microscopy, Electron ; Models, Biological ; Mutation/genetics ; Mutation/physiology ; Plant Leaves/microbiology ; Virulence/genetics ; Virulence/physiology
Chemical Substances	Bacterial Proteins ; Fimbriae Proteins (147680-16-8)
Language	English
Publishing date	2010-07-23
Publishing country	United States
Document type	Journal Article ; Research Support, N.I.H., Extramural
ZDB-ID	2968-3
ISSN	1098-5530 ; 0021-9193
ISSN (online)	1098-5530
ISSN	0021-9193
DOI	10.1128/JB.00557-10
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Article ; Online: Genetic diversity in the oral pathogen Porphyromonas gingivalis: molecular mechanisms and biological consequences.

Tribble, Gena D / Kerr, Jennifer E / Wang, Bing-Yan

Future microbiology

2013 Volume 8, Issue 5, Page(s) 607–620

Abstract: Porphyromonas gingivalis is a Gram-negative anaerobic bacterium that colonizes the human oral cavity. It is implicated in the development of periodontitis, a chronic periodontal disease affecting half of the adult population in the USA. To survive in the ...

Abstract	Porphyromonas gingivalis is a Gram-negative anaerobic bacterium that colonizes the human oral cavity. It is implicated in the development of periodontitis, a chronic periodontal disease affecting half of the adult population in the USA. To survive in the oral cavity, these bacteria must colonize dental plaque biofilms in competition with other bacterial species. Long-term survival requires P. gingivalis to evade host immune responses, while simultaneously adapting to the changing physiology of the host and to alterations in the plaque biofilm. In reflection of this highly variable niche, P. gingivalis is a genetically diverse species and in this review the authors summarize genetic diversity as it relates to pathogenicity in P. gingivalis. Recent studies revealing a variety of mechanisms by which adaptive changes in genetic content can occur are also reviewed. Understanding the genetic plasticity of P. gingivalis will provide a better framework for understanding the host-microbe interactions associated with periodontal disease.
MeSH term(s)	Adaptation, Physiological ; Genetic Variation ; Host-Pathogen Interactions ; Humans ; Mouth/microbiology ; Periodontitis/microbiology ; Porphyromonas gingivalis/genetics ; Porphyromonas gingivalis/pathogenicity ; Virulence
Language	English
Publishing date	2013-06-19
Publishing country	England
Document type	Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Review
ISSN	1746-0921
ISSN (online)	1746-0921
DOI	10.2217/fmb.13.30
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Article ; Online: Breast cancer patients with a negative axillary ultrasound may have clinically significant nodal metastasis.

Keelan, Stephen / Heeney, Anna / Downey, Eithne / Hegarty, Aisling / Roche, Trudi / Power, Colm / Mhuircheartaigh, Neasa Ni / Duke, Deirdre / Kerr, Jennifer / Hambly, Niamh / Hill, Arnold

Breast cancer research and treatment

2021 Volume 187, Issue 2, Page(s) 303–310

Abstract: Introduction: The non-invasive nature of the preoperative axillary ultrasound (AUS) fits the current trend of increasingly conservative axillary management. Recent publications suggest that early disease patients with clinically and radiologically ... ...

Abstract	Introduction: The non-invasive nature of the preoperative axillary ultrasound (AUS) fits the current trend of increasingly conservative axillary management. Recent publications suggest that early disease patients with clinically and radiologically negative axillae do not require sentinel lymph node biopsy (SLNB). This study aims to determine the true extent of axillary node disease in negative preoperative AUS patients. Methods: A 10-year breast cancer registry was reviewed to identify women with pathologically confirmed T1-2 invasive breast cancer and a negative preoperative AUS. Patients who received neoadjuvant chemotherapy were excluded. Combined positive lymph node count of SLNB ± ALND was used to determine total nodal burden (TNB). Axillae were classified into low nodal burden (LNB) defined as 1-2 positive nodes and high nodal burden (HNB) defined as ≥ 3 positive nodes. Results: 762 patients with negative AUS were included. There were 46.9% and 53.0% T1 and T2 tumours, respectively. 76.9% were node negative (0 LN +), 18.9% had LNB (1-2 LN +) and 4.2% had HNB (≥ 3LN +). Specifically, HNB disease was seen in 2% of T1 tumours and 6.2 % of T2 tumours with a negative AUS. In multivariate analysis, T2 strongly associated with ≥ 3 positive ALNs (OR 2.66 CI 1.09-6.51 p = 0.03) as did lymphovascular invasion (OR 3.56 CI 1.52-8.30 p = < 0.01). Conclusion: This study shows that AUS in its current form cannot exclude HNB axillary metastasis to the extent of eliminating the need for surgical staging of the axilla. This may impact axillary local-regional recurrence and disease-free survival. We caution that a negative AUS has a rate of 4.2% of HNB. Therefore, in cases of negative AUS with a T2 tumour, we advocate continued use of SLNB.
MeSH term(s)	Axilla/pathology ; Breast Neoplasms/diagnostic imaging ; Breast Neoplasms/pathology ; Breast Neoplasms/therapy ; Female ; Humans ; Lymph Node Excision ; Lymph Nodes/diagnostic imaging ; Lymph Nodes/pathology ; Lymph Nodes/surgery ; Lymphatic Metastasis ; Neoplasm Recurrence, Local ; Neoplasm Staging ; Sentinel Lymph Node Biopsy
Language	English
Publishing date	2021-04-10
Publishing country	Netherlands
Document type	Journal Article ; Review
ZDB-ID	604563-7
ISSN	1573-7217 ; 0167-6806
ISSN (online)	1573-7217
ISSN	0167-6806
DOI	10.1007/s10549-021-06194-8
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