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  1. Article ; Online: A multi-genotype therapeutic human papillomavirus vaccine elicits potent T cell responses to conserved regions of early proteins.

    Hancock, Gemma / Blight, Joshua / Lopez-Camacho, Cesar / Kopycinski, Jakub / Pocock, Mamatha / Byrne, Wendy / Price, Michael J / Kemlo, Phillip / Evans, Ranoromanana Ionitiana / Bloss, Angela / Saunders, Kathryn / Kirton, Richard / Andersson, Monique / Hellner, Karin / Reyes-Sandoval, Arturo / Dorrell, Lucy

    Scientific reports

    2019  Volume 9, Issue 1, Page(s) 18713

    Abstract: Despite an efficacious prophylactic human papillomavirus (HPV) vaccine there is still a considerable global burden of HPV-related disease. Therapeutic vaccines that could prevent cancers in at-risk women are urgently needed. Most candidate therapeutic ... ...

    Abstract Despite an efficacious prophylactic human papillomavirus (HPV) vaccine there is still a considerable global burden of HPV-related disease. Therapeutic vaccines that could prevent cancers in at-risk women are urgently needed. Most candidate therapeutic vaccines have focused on two high-risk (hr) HPV genotypes, 16 and 18, and two viral targets, E6 and E7, which may limit global coverage and efficacy. We designed the synthetic gene '5GHPV3' by selecting conserved regions from each of the six early proteins and generating consensus sequences to represent five hrHPV genotypes. 5GHPV3 was delivered by plasmid DNA, chimpanzee adenovirus (ChAdOx1) and modified vaccinia Ankara (MVA) vectors in prime-boost regimens to mice. ChAdOx1-5GHPV3 / MVA-5GHPV3 induced higher magnitude and more durable HPV-specific T cell responses than other regimens. Vaccine-induced T cells were polyfunctional and persisted at high frequencies for at least six weeks. Importantly, HPV-specific effector CD8 + T cells were detected in the cervix following systemic administration of ChAdOx1-5GHPV3 / MVA-5GHPV3 and increased in frequency over time, indicating continued trafficking of T cells to the cervix. Finally, T cells specific for 5GHPV3 encoded antigens were detected by IFN-γ Elispot in women with current or past hrHPV infections, confirming the presence of epitopes relevant to natural immune control.
    MeSH term(s) Adolescent ; Adult ; Animals ; CD8-Positive T-Lymphocytes/immunology ; Female ; Genetic Vectors ; Genotype ; Humans ; Immunization, Secondary ; Mice ; Mice, Inbred C57BL ; Middle Aged ; Oncogene Proteins, Viral/genetics ; Papillomaviridae/genetics ; Papillomaviridae/immunology ; Papillomavirus Infections/immunology ; Papillomavirus Infections/metabolism ; Papillomavirus Vaccines/genetics ; Papillomavirus Vaccines/immunology ; Vaccination ; Vaccines, DNA/genetics ; Vaccines, DNA/immunology
    Chemical Substances Oncogene Proteins, Viral ; Papillomavirus Vaccines ; Vaccines, DNA
    Language English
    Publishing date 2019-12-10
    Publishing country England
    Document type Journal Article
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-019-55014-z
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Multilocus Sequence Typing of Clostridium difficile

    Griffiths, David / Fawley, Warren / Kachrimanidou, Melina / Bowden, Rory / Crook, Derrick W / Fung, Rowena / Golubchik, Tanya / Harding, Rosalind M / Jeffery, Katie J.M / Jolley, Keith A / Kirton, Richard / Peto, Tim E / Rees, Gareth / Stoesser, Nicole / Vaughan, Alison / Walker, A. Sarah / Young, Bernadette C / Wilcox, Mark / Dingle, Kate E

    Journal of clinical microbiology JCM. 2010 Mar., v. 48, no. 3

    2010  

    Abstract: A robust high-throughput multilocus sequence typing (MLST) scheme for Clostridium difficile was developed and validated using a diverse collection of 50 reference isolates representing 45 different PCR ribotypes and 102 isolates from recent clinical ... ...

    Abstract A robust high-throughput multilocus sequence typing (MLST) scheme for Clostridium difficile was developed and validated using a diverse collection of 50 reference isolates representing 45 different PCR ribotypes and 102 isolates from recent clinical samples. A total of 49 PCR ribotypes were represented overall. All isolates were typed by MLST and yielded 40 sequence types (STs). A web-accessible database was set up (http://pubmlst.org/cdifficile/) to facilitate the dissemination and comparison of C. difficile MLST genotyping data among laboratories. MLST and PCR ribotyping were similar in discriminatory abilities, having indices of discrimination of 0.90 and 0.92, respectively. Some STs corresponded to a single PCR ribotype (32/40), other STs corresponded to multiple PCR ribotypes (8/40), and, conversely, the PCR ribotype was not always predictive of the ST. The total number of variable nucleotide sites in the concatenated MLST sequences was 103/3,501 (2.9%). Concatenated MLST sequences were used to construct a neighbor-joining tree which identified four phylogenetic groups of STs and one outlier (ST-11; PCR ribotype 078). These groups apparently correlate with clades identified previously by comparative genomics. The MLST scheme was sufficiently robust to allow direct genotyping of C. difficile in total stool DNA extracts without isolate culture. The direct (nonculture) MLST approach may prove useful as a rapid genotyping method, potentially benefiting individual patients and informing hospital infection control.
    Language English
    Dates of publication 2010-03
    Size p. 770-778.
    Publishing place American Society for Microbiology
    Document type Article
    ZDB-ID 390499-4
    ISSN 1098-660X ; 0095-1137
    ISSN (online) 1098-660X
    ISSN 0095-1137
    Database NAL-Catalogue (AGRICOLA)

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  3. Article ; Online: Multilocus sequence typing of Clostridium difficile.

    Griffiths, David / Fawley, Warren / Kachrimanidou, Melina / Bowden, Rory / Crook, Derrick W / Fung, Rowena / Golubchik, Tanya / Harding, Rosalind M / Jeffery, Katie J M / Jolley, Keith A / Kirton, Richard / Peto, Tim E / Rees, Gareth / Stoesser, Nicole / Vaughan, Alison / Walker, A Sarah / Young, Bernadette C / Wilcox, Mark / Dingle, Kate E

    Journal of clinical microbiology

    2009  Volume 48, Issue 3, Page(s) 770–778

    Abstract: A robust high-throughput multilocus sequence typing (MLST) scheme for Clostridium difficile was developed and validated using a diverse collection of 50 reference isolates representing 45 different PCR ribotypes and 102 isolates from recent clinical ... ...

    Abstract A robust high-throughput multilocus sequence typing (MLST) scheme for Clostridium difficile was developed and validated using a diverse collection of 50 reference isolates representing 45 different PCR ribotypes and 102 isolates from recent clinical samples. A total of 49 PCR ribotypes were represented overall. All isolates were typed by MLST and yielded 40 sequence types (STs). A web-accessible database was set up (http://pubmlst.org/cdifficile/) to facilitate the dissemination and comparison of C. difficile MLST genotyping data among laboratories. MLST and PCR ribotyping were similar in discriminatory abilities, having indices of discrimination of 0.90 and 0.92, respectively. Some STs corresponded to a single PCR ribotype (32/40), other STs corresponded to multiple PCR ribotypes (8/40), and, conversely, the PCR ribotype was not always predictive of the ST. The total number of variable nucleotide sites in the concatenated MLST sequences was 103/3,501 (2.9%). Concatenated MLST sequences were used to construct a neighbor-joining tree which identified four phylogenetic groups of STs and one outlier (ST-11; PCR ribotype 078). These groups apparently correlate with clades identified previously by comparative genomics. The MLST scheme was sufficiently robust to allow direct genotyping of C. difficile in total stool DNA extracts without isolate culture. The direct (nonculture) MLST approach may prove useful as a rapid genotyping method, potentially benefiting individual patients and informing hospital infection control.
    MeSH term(s) Bacterial Typing Techniques/methods ; Clostridioides difficile/classification ; Clostridioides difficile/genetics ; Clostridioides difficile/isolation & purification ; Clostridium Infections/microbiology ; DNA Fingerprinting/methods ; Genotype ; Humans ; Infant ; Polymorphism, Genetic ; Ribotyping ; Sensitivity and Specificity ; Sequence Analysis, DNA/methods
    Language English
    Publishing date 2009-12-30
    Publishing country United States
    Document type Comparative Study ; Evaluation Study ; Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 390499-4
    ISSN 1098-660X ; 0095-1137
    ISSN (online) 1098-660X
    ISSN 0095-1137
    DOI 10.1128/JCM.01796-09
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Performance characteristics of five immunoassays for SARS-CoV-2

    Ainsworth, Mark / Andersson, Monique / Auckland, Kathryn / Baillie, J Kenneth / Barnes, Eleanor / Beer, Sally / Beveridge, Amy / Bibi, Sagida / Blackwell, Luke / Borak, Martyna / Bown, Abbie / Brooks, Tim / Burgess-Brown, Nicola A / Camara, Susana / Catton, Matthew / Chau, Kevin K. / Christott, Thomas / Clutterbuck, Elizabeth / Coker, Jesse /
    Cornall, Richard J / Cox, Stuart / Crawford-Jones, David / Crook, Derrick W / D'Arcangelo, Silvia / Dejnirattsai, Wanwisa / Dequaire, Julie M M / Dimitriadis, Stavros / Dingle, Kate E / Doherty, George / Dold, Christina / Dong, Tao / Dunachie, Susanna J / Ebner, Daniel / Emmenegger, Marc / Espinosa, Alexis / Eyre, David W / Fairhead, Rory / Fassih, Shayan / Feehily, Conor / Felle, Sally / Fernandez-Cid, Alejandra / Fernandez Mendoza, Maria / Foord, Thomas H / Fordwoh, Thomas / Fox McKee, Deborah / Frater, John / Gallardo Sanchez, Veronica / Gent, Nick / Georgiou, Dominique / Groves, Christopher J / Hallis, Bassam / Hammond, Peter M / Hatch, Stephanie B. / Harvala, Heli J / Hill, Jennifer / Hoosdally, Sarah J / Horsington, Bryn / Howarth, Alison / James, Tim / Jeffery, Katie / Jones, Elizabeth / Justice, Anita / Karpe, Fredrik / Kavanagh, James / Kim, David S / Kirton, Richard / Klenerman, Paul / Knight, Julian C / Koukouflis, Leonidas / Kwok, Andrew / Leuschner, Ullrich / Levin, Robert / Linder, Aline / Lockett, Teresa / Lumley, Sheila F / Marinou, Spyridoula / Marsden, Brian D / Martinez, Jose / Martins Ferreira, Lucas / Mason, Lara / Matthews, Philippa C / Mentzer, Alexander J / Mobbs, Alexander / Mongkolsapaya, Juthathip / Morrow, Jordan / Mukhopadhyay, Shubhashish M M / Neville, Matthew J / Oakley, Sarah / Oliveira, Marta / Otter, Ashley / Paddon, Kevin / Pascoe, Jordan / Peng, Yanchun / Perez, Elena / Perumal, Prem K / Peto, Timothy E A / Pickford, Hayleah / Ploeg, Rutger J / Pollard, Andrew J / Richardson, Anastasia / Ritter, Thomas G / Roberts, David J / Rodger, Gillian / Rollier, Christine S / Rowe, Cathy / Rudkin, Justine K / Screaton, Gavin / Semple, Malcolm G / Sienkiewicz, Alex / Silva-Reyes, Laura / Skelly, Donal T / Sobrino Diaz, Alberto / Stafford, Lizzie / Stockdale, Lisa / Stoesser, Nicole / Street, Teresa / Stuart, David I / Sweed, Angela / Taylor, Adan / Thraves, Hannah / Tsang, Hoi P / Verheul, Marije K / Vipond, Richard / Walker, Timothy M / Wareing, Susan / Warren, Yolanda / Wells, Charlie / Wilson, Clare / Withycombe, Kate / Young, Rebecca K

    The Lancet Infectious Diseases ; ISSN 1473-3099

    a head-to-head benchmark comparison

    2020  

    Keywords Infectious Diseases ; covid19
    Language English
    Publisher Elsevier BV
    Publishing country us
    Document type Article ; Online
    DOI 10.1016/s1473-3099(20)30634-4
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article ; Online: Differential occupational risks to healthcare workers from SARS-CoV-2 observed during a prospective observational study

    Eyre, David W / Lumley, Sheila F / O'Donnell, Denise / Campbell, Mark / Sims, Elizabeth / Lawson, Elaine / Warren, Fiona / James, Tim / Cox, Stuart / Howarth, Alison / Doherty, George / Hatch, Stephanie B / Kavanagh, James / Chau, Kevin K / Fowler, Philip W / Swann, Jeremy / Volk, Denis / Yang-Turner, Fan / Stoesser, Nicole /
    Matthews, Philippa C / Dudareva, Maria / Davies, Timothy / Shaw, Robert H / Peto, Leon / Downs, Louise O / Vogt, Alexander / Amini, Ali / Young, Bernadette C / Drennan, Philip George / Mentzer, Alexander J / Skelly, Donal T / Karpe, Fredrik / Neville, Matt J / Andersson, Monique / Brent, Andrew J / Jones, Nicola / Martins Ferreira, Lucas / Christott, Thomas / Marsden, Brian D / Hoosdally, Sarah / Cornall, Richard / Crook, Derrick W / Stuart, David I / Screaton, Gavin / Watson, Adam JR / Taylor, Adan / Chetwynd, Alan / Grassam-Rowe, Alexander / Mighiu, Alexandra S / Livingstone, Angus / Killen, Annabel / Rigler, Caitlin / Harries, Callum / East, Cameron / Lee, Charlotte / Mason, Chris JB / Holland, Christian / Thompson, Connor / Hennesey, Conor / Savva, Constantinos / Kim, David S / Harris, Edward WA / McGivern, Euan J / Qian, Evelyn / Rothwell, Evie / Back, Francesca / Kelly, Gabriella / Watson, Gareth / Howgego, Gregory / Chase, Hannah / Danbury, Hannah / Laurenson-Schafer, Hannah / Ward, Harry L / Hendron, Holly / Vorley, Imogen C / Tol, Isabel / Gunnell, James / Ward, Jocelyn LF / Drake, Jonathan / Wilson, Joseph D / Morton, Joshua / Dequaire, Julie / O'Byrne, Katherine / Motohashi, Kenzo / Harper, Kirsty / Ravi, Krupa / Millar, Lancelot J / Peck, Liam J / Oliver, Madeleine / English, Marcus Rex / Kumarendran, Mary / Wedlich, Matthew / Ambler, Olivia / Deal, Oscar T / Sweeney, Owen / Cowie, Philip / Naudé, Rebecca te Water / Young, Rebecca / Freer, Rosie / Scott, Samuel / Sussmes, Samuel / Peters, Sarah / Pattenden, Saxon / Waite, Seren / Johnson, Síle Ann / Kourdov, Stefan / Santos-Paulo, Stephanie / Dimitrov, Stoyan / Kerneis, Sven / Ahmed-Firani, Tariq / King, Thomas B / Ritter, Thomas G / Foord, Thomas H / De Toledo, Zoe / Christie, Thomas / Gergely, Bernadett / Axten, David / Simons, Emma-Jane / Nevard, Heather / Philips, Jane / Szczurkowska, Justyna / Patel, Kaisha / Smit, Kyla / Warren, Laura / Morgan, Lisa / Smith, Lucianne / Robles, Maria / McKnight, Mary / Luciw, Michael / Gates, Michelle / Sande, Nellia / Turford, Rachel / Ray, Roshni / Rughani, Sonam / Mitchell, Tracey / Bellinger, Trisha / Wharton, Vicki / Justice, Anita / Jesuthasan, Gerald / Wareing, Susan / Huda Mohamad Fadzillah, Nurul / Cann, Kathryn / Kirton, Richard / Sutton, Claire / Salvagno, Claudia / DAmato, Gabriella / Pill, Gemma / Butcher, Lisa / Rylance-Knight, Lydia / Tabirao, Merline / Moroney, Ruth / Wright, Sarah / Peto, Timothy EA / Holthof, Bruno / O'Donnell, Anne-Marie / Ebner, Daniel / Conlon, Christopher P / Jeffery, Katie / Walker, Timothy M

    eLife

    2020  Volume 9

    Abstract: We conducted voluntary Covid-19 testing programmes for symptomatic and asymptomatic staff at a UK teaching hospital using naso-/oro-pharyngeal PCR testing and immunoassays for IgG antibodies. 1128/10,034 (11.2%) staff had evidence of Covid-19 at some ... ...

    Abstract We conducted voluntary Covid-19 testing programmes for symptomatic and asymptomatic staff at a UK teaching hospital using naso-/oro-pharyngeal PCR testing and immunoassays for IgG antibodies. 1128/10,034 (11.2%) staff had evidence of Covid-19 at some time. Using questionnaire data provided on potential risk-factors, staff with a confirmed household contact were at greatest risk (adjusted odds ratio [aOR] 4.82 [95%CI 3.45–6.72]). Higher rates of Covid-19 were seen in staff working in Covid-19-facing areas (22.6% vs. 8.6% elsewhere) (aOR 2.47 [1.99–3.08]). Controlling for Covid-19-facing status, risks were heterogenous across the hospital, with higher rates in acute medicine (1.52 [1.07–2.16]) and sporadic outbreaks in areas with few or no Covid-19 patients. Covid-19 intensive care unit staff were relatively protected (0.44 [0.28–0.69]), likely by a bundle of PPE-related measures. Positive results were more likely in Black (1.66 [1.25–2.21]) and Asian (1.51 [1.28–1.77]) staff, independent of role or working location, and in porters and cleaners (2.06 [1.34–3.15]).
    Keywords General Biochemistry, Genetics and Molecular Biology ; General Immunology and Microbiology ; General Neuroscience ; General Medicine ; covid19
    Language English
    Publisher eLife Sciences Publications, Ltd
    Publishing country uk
    Document type Article ; Online
    ZDB-ID 2687154-3
    ISSN 2050-084X
    ISSN 2050-084X
    DOI 10.7554/elife.60675
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Book ; Online: Author response

    Eyre, David W / Lumley, Sheila F / O'Donnell, Denise / Campbell, Mark / Sims, Elizabeth / Lawson, Elaine / Warren, Fiona / James, Tim / Cox, Stuart / Howarth, Alison / Doherty, George / Hatch, Stephanie B / Kavanagh, James / Chau, Kevin K / Fowler, Philip W / Swann, Jeremy / Volk, Denis / Yang-Turner, Fan / Stoesser, Nicole /
    Matthews, Philippa C / Dudareva, Maria / Davies, Timothy / Shaw, Robert H / Peto, Leon / Downs, Louise O / Vogt, Alexander / Amini, Ali / Young, Bernadette C / Drennan, Philip George / Mentzer, Alexander J / Skelly, Donal T / Karpe, Fredrik / Neville, Matt J / Andersson, Monique / Brent, Andrew J / Jones, Nicola / Martins Ferreira, Lucas / Christott, Thomas / Marsden, Brian D / Hoosdally, Sarah / Cornall, Richard / Crook, Derrick W / Stuart, David I / Screaton, Gavin / Watson, Adam JR / Taylor, Adan / Chetwynd, Alan / Grassam-Rowe, Alexander / Mighiu, Alexandra S / Livingstone, Angus / Killen, Annabel / Rigler, Caitlin / Harries, Callum / East, Cameron / Lee, Charlotte / Mason, Chris JB / Holland, Christian / Thompson, Connor / Hennesey, Conor / Savva, Constantinos / Kim, David S / Harris, Edward WA / McGivern, Euan J / Qian, Evelyn / Rothwell, Evie / Back, Francesca / Kelly, Gabriella / Watson, Gareth / Howgego, Gregory / Chase, Hannah / Danbury, Hannah / Laurenson-Schafer, Hannah / Ward, Harry L / Hendron, Holly / Vorley, Imogen C / Tol, Isabel / Gunnell, James / Ward, Jocelyn LF / Drake, Jonathan / Wilson, Joseph D / Morton, Joshua / Dequaire, Julie / O'Byrne, Katherine / Motohashi, Kenzo / Harper, Kirsty / Ravi, Krupa / Millar, Lancelot J / Peck, Liam J / Oliver, Madeleine / English, Marcus Rex / Kumarendran, Mary / Wedlich, Matthew / Ambler, Olivia / Deal, Oscar T / Sweeney, Owen / Cowie, Philip / Naudé, Rebecca te Water / Young, Rebecca / Freer, Rosie / Scott, Samuel / Sussmes, Samuel / Peters, Sarah / Pattenden, Saxon / Waite, Seren / Johnson, Síle Ann / Kourdov, Stefan / Santos-Paulo, Stephanie / Dimitrov, Stoyan / Kerneis, Sven / Ahmed-Firani, Tariq / King, Thomas B / Ritter, Thomas G / Foord, Thomas H / De Toledo, Zoe / Christie, Thomas / Gergely, Bernadett / Axten, David / Simons, Emma-Jane / Nevard, Heather / Philips, Jane / Szczurkowska, Justyna / Patel, Kaisha / Smit, Kyla / Warren, Laura / Morgan, Lisa / Smith, Lucianne / Robles, Maria / McKnight, Mary / Luciw, Michael / Gates, Michelle / Sande, Nellia / Turford, Rachel / Ray, Roshni / Rughani, Sonam / Mitchell, Tracey / Bellinger, Trisha / Wharton, Vicki / Justice, Anita / Jesuthasan, Gerald / Wareing, Susan / Huda Mohamad Fadzillah, Nurul / Cann, Kathryn / Kirton, Richard / Sutton, Claire / Salvagno, Claudia / DAmato, Gabriella / Pill, Gemma / Butcher, Lisa / Rylance-Knight, Lydia / Tabirao, Merline / Moroney, Ruth / Wright, Sarah / Peto, Timothy EA / Holthof, Bruno / O'Donnell, Anne-Marie / Ebner, Daniel / Conlon, Christopher P / Jeffery, Katie / Walker, Timothy M

    Differential occupational risks to healthcare workers from SARS-CoV-2 observed during a prospective observational study

    2020  

    Keywords covid19
    Publisher eLife Sciences Publications, Ltd
    Publishing country uk
    Document type Book ; Online
    DOI 10.7554/elife.60675.sa2
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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