Article ; Online: Identifying Protein Interactomes of Target RNAs Using HyPR-MS.
Methods in molecular biology (Clifton, N.J.)
2021 Volume 2404, Page(s) 219–244
Abstract: RNA-protein interactions are integral to maintaining proper cellular function and homeostasis, and the disruption of key RNA-protein interactions is central to many disease states. HyPR-MS (hybridization purification of RNA-protein complexes followed by ... ...
Abstract | RNA-protein interactions are integral to maintaining proper cellular function and homeostasis, and the disruption of key RNA-protein interactions is central to many disease states. HyPR-MS (hybridization purification of RNA-protein complexes followed by mass spectrometry) is a highly versatile and efficient technology which enables multiplexed discovery of specific RNA-protein interactomes. This chapter provides extensive guidance for successful application of HyPR-MS to the system and target RNA(s) of interest, as well as a detailed description of the fundamental HyPR-MS procedure, including: (1) experimental design of controls, capture oligonucleotides, and qPCR assays; (2) formaldehyde cross-linking of cell culture; (3) cell lysis and RNA solubilization; (4) isolation of target RNA(s); (5) RNA purification and RT-qPCR analysis; (6) protein preparation and mass spectrometric analysis; and (7) mass spectrometric data analysis. |
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MeSH term(s) | Mass Spectrometry ; Nucleic Acid Hybridization ; Oligonucleotides ; Proteomics ; RNA/genetics |
Chemical Substances | Oligonucleotides ; RNA (63231-63-0) |
Language | English |
Publishing date | 2021-10-25 |
Publishing country | United States |
Document type | Journal Article ; Research Support, N.I.H., Extramural |
ISSN | 1940-6029 |
ISSN (online) | 1940-6029 |
DOI | 10.1007/978-1-0716-1851-6_12 |
Database | MEDical Literature Analysis and Retrieval System OnLINE |
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