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  1. Article ; Online: Combining nilotinib and PD-L1 blockade reverses CD4+ T-cell dysfunction and prevents relapse in acute B-cell leukemia.

    Tracy, Sean I / Venkatesh, Hrishi / Hekim, Can / Heltemes-Harris, Lynn M / Knutson, Todd P / Bachanova, Veronika / Farrar, Michael A

    Blood

    2022  Volume 140, Issue 4, Page(s) 335–348

    Abstract: Patients with acute lymphoblastic leukemia have experienced significantly improved outcomes due to the advent of chimeric antigen receptor (CAR) T cells and bispecific T-cell engagers, although a proportion of patients still relapse despite these ... ...

    Abstract Patients with acute lymphoblastic leukemia have experienced significantly improved outcomes due to the advent of chimeric antigen receptor (CAR) T cells and bispecific T-cell engagers, although a proportion of patients still relapse despite these advances. T-cell exhaustion has been recently suggested to be an important driver of relapse in these patients. Indeed, phenotypic exhaustion of CD4+ T cells is predictive of relapse and poor overall survival in B-cell acute lymphoblastic leukemia (B-ALL). Thus, therapies that counter T-cell exhaustion, such as immune checkpoint blockade, may improve leukemia immunosurveillance and prevent relapse. Here, we used a murine model of Ph+ B-ALL as well as human bone marrow biopsy samples to assess the fundamental nature of CD4+ T-cell exhaustion and the preclinical therapeutic potential for combining anti-PD-L1 based checkpoint blockade with tyrosine kinase inhibitors targeting the BCR-ABL oncoprotein. Single-cell RNA-sequence analysis revealed that B-ALL induces a unique subset of CD4+ T cells with both cytotoxic and helper functions. Combination treatment with the tyrosine kinase inhibitor nilotinib and anti-PD-L1 dramatically improves long-term survival of leukemic mice. Depletion of CD4+ T cells prior to therapy completely abrogates the survival benefit, implicating CD4+ T cells as key drivers of the protective anti-leukemia immune response. Indeed, treatment with anti-PD-L1 leads to clonal expansion of leukemia-specific CD4+ T cells with the aforementioned helper/cytotoxic phenotype as well as reduced expression of exhaustion markers. These findings support efforts to use PD1/PD-L1 checkpoint blockade in clinical trials and highlight the importance of CD4+ T-cell dysfunction in limiting the endogenous anti-leukemia response.
    MeSH term(s) Animals ; Antineoplastic Agents ; B7-H1 Antigen ; CD4-Positive T-Lymphocytes ; Humans ; Leukemia, B-Cell ; Mice ; Precursor Cell Lymphoblastic Leukemia-Lymphoma ; Pyrimidines ; Recurrence
    Chemical Substances Antineoplastic Agents ; B7-H1 Antigen ; Pyrimidines ; nilotinib (F41401512X)
    Language English
    Publishing date 2022-03-03
    Publishing country United States
    Document type Journal Article
    ZDB-ID 80069-7
    ISSN 1528-0020 ; 0006-4971
    ISSN (online) 1528-0020
    ISSN 0006-4971
    DOI 10.1182/blood.2021015341
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: A porcine enterovirus G associated with enteric disease contains a novel papain-like cysteine protease.

    Knutson, Todd P / Velayudhan, Binu T / Marthaler, Douglas G

    The Journal of general virology

    2017  Volume 98, Issue 6, Page(s) 1305–1310

    Abstract: Identification of unknown pathogens in pigs displaying enteric illness is difficult due to the large diversity of bacterial and viral species found within faecal samples. Current methods often require bacterial or viral isolation, or testing only a ... ...

    Abstract Identification of unknown pathogens in pigs displaying enteric illness is difficult due to the large diversity of bacterial and viral species found within faecal samples. Current methods often require bacterial or viral isolation, or testing only a limited number of known species using quantitative PCR analysis. Herein, faeces from two 25-day-old piglets with diarrhoea from Texas, USA, were analysed by metagenomic next-generation sequencing to rapidly identify possible pathogens. Our analysis included a bioinformatics pipeline of rapid short-read classification and de novo genome assembly which resulted in the identification of a porcine enterovirus G (EV-G), a complete genome with substantial nucleotide differences (>30 %) among current sequences, and a novel non-structural protein similar in sequence to the Torovirus papain-like cysteine protease (PLpro). This discovery led to the identification and circulation of an EV-G with a novel PLpro in the USA that has not been previously reported.
    MeSH term(s) Animals ; Cluster Analysis ; Computational Biology ; Cysteine Proteases/genetics ; Diarrhea/veterinary ; Diarrhea/virology ; Enterovirus Infections/veterinary ; Enterovirus Infections/virology ; Enteroviruses, Porcine/classification ; Enteroviruses, Porcine/enzymology ; Enteroviruses, Porcine/genetics ; Enteroviruses, Porcine/isolation & purification ; Feces/virology ; Genome, Viral ; High-Throughput Nucleotide Sequencing ; Phylogeny ; Sequence Analysis, DNA ; Swine ; Swine Diseases/virology ; Texas
    Chemical Substances Cysteine Proteases (EC 3.4.-)
    Keywords covid19
    Language English
    Publishing date 2017-06-08
    Publishing country England
    Document type Journal Article
    ZDB-ID 219316-4
    ISSN 1465-2099 ; 0022-1317
    ISSN (online) 1465-2099
    ISSN 0022-1317
    DOI 10.1099/jgv.0.000799
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Semi‐quantitative duplex RT‐PCR reveals the low occurrence of Porcine Pegivirus and Atypical Porcine Pestivirus in diagnostic samples from the United States

    Chen, Fangzhou / Knutson, Todd P / Braun, Eli / Jiang, Yin / Rossow, Stephanie / Marthaler, Douglas G

    Transboundary and emerging diseases. 2019 May, v. 66, no. 3

    2019  

    Abstract: Porcine Pegivirus (PPgV) and Atypical Porcine Pestivirus (APPV) are two recently identified porcine viruses. In this study, the identification of two viruses by metagenomic sequencing, and a duplex semi‐quantitative RT‐PCR was developed to detect these ... ...

    Abstract Porcine Pegivirus (PPgV) and Atypical Porcine Pestivirus (APPV) are two recently identified porcine viruses. In this study, the identification of two viruses by metagenomic sequencing, and a duplex semi‐quantitative RT‐PCR was developed to detect these pathogens simultaneously. The PPgV strain Minnesota‐1/2016 had a 95.5%–96.3% nucleotide identity and clustered with the recently identified US PPgV strains, which is a distant clade from the German PPgV strains. The APPV strain Minnesota‐1/2016 shared an 87.3%–92.0% nucleotide identity with the other global APPV strains identity but only shared an 82.8%–83.0% nucleotide identity with clade II consisting of strain identified in China. Detection of both PPgV and APPV was 9.0% of the diagnostic cases. Co‐infection of PPgV and APPV was identified in 7.5% of the diagnostic cases. The occurrence and genetic characterization of PPgV and APPV further enhance our knowledge regarding these new pathogens in the United States.
    Keywords Pestivirus ; emerging diseases ; metagenomics ; mixed infection ; pathogens ; reverse transcriptase polymerase chain reaction ; viruses ; China ; United States
    Language English
    Dates of publication 2019-05
    Size p. 1420-1425.
    Publishing place John Wiley & Sons, Ltd
    Document type Article
    Note JOURNAL ARTICLE
    ZDB-ID 2414822-2
    ISSN 1865-1682 ; 1865-1674
    ISSN (online) 1865-1682
    ISSN 1865-1674
    DOI 10.1111/tbed.13154
    Database NAL-Catalogue (AGRICOLA)

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  4. Article ; Online: Single-cell analysis identifies dynamic gene expression networks that govern B cell development and transformation.

    Lee, Robin D / Munro, Sarah A / Knutson, Todd P / LaRue, Rebecca S / Heltemes-Harris, Lynn M / Farrar, Michael A

    Nature communications

    2021  Volume 12, Issue 1, Page(s) 6843

    Abstract: Integration of external signals and B-lymphoid transcription factor activities organise B cell lineage commitment through alternating cycles of proliferation and differentiation, producing a diverse repertoire of mature B cells. We use single-cell ... ...

    Abstract Integration of external signals and B-lymphoid transcription factor activities organise B cell lineage commitment through alternating cycles of proliferation and differentiation, producing a diverse repertoire of mature B cells. We use single-cell transcriptomics/proteomics to identify differentially expressed gene networks across B cell development and correlate these networks with subtypes of B cell leukemia. Here we show unique transcriptional signatures that refine the pre-B cell expansion stages into pre-BCR-dependent and pre-BCR-independent proliferative phases. These changes correlate with reciprocal changes in expression of the transcription factor EBF1 and the RNA binding protein YBX3, that are defining features of the pre-BCR-dependent stage. Using pseudotime analysis, we further characterize the expression kinetics of different biological modalities across B cell development, including transcription factors, cytokines, chemokines, and their associated receptors. Our findings demonstrate the underlying heterogeneity of developing B cells and characterise developmental nodes linked to B cell transformation.
    MeSH term(s) B-Lymphocytes/cytology ; B-Lymphocytes/metabolism ; B-Lymphocytes/pathology ; CCAAT-Enhancer-Binding Proteins/genetics ; CCAAT-Enhancer-Binding Proteins/metabolism ; Cell Proliferation/genetics ; Gene Expression Profiling ; Gene Expression Regulation ; Gene Regulatory Networks ; Heat-Shock Proteins/genetics ; Heat-Shock Proteins/metabolism ; Humans ; Leukopoiesis/genetics ; Precursor Cell Lymphoblastic Leukemia-Lymphoma/genetics ; Precursor Cell Lymphoblastic Leukemia-Lymphoma/pathology ; Precursor Cells, B-Lymphoid/cytology ; Precursor Cells, B-Lymphoid/metabolism ; Prognosis ; Proteomics ; Single-Cell Analysis ; Trans-Activators/genetics ; Trans-Activators/metabolism
    Chemical Substances CCAAT-Enhancer-Binding Proteins ; EBF1 protein, human ; Heat-Shock Proteins ; Trans-Activators ; YBX3 protein, human
    Language English
    Publishing date 2021-11-25
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-021-27232-5
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Characterizing Macrophage Diversity in Metastasis-Bearing Lungs Reveals a Lipid-Associated Macrophage Subset.

    Huggins, Danielle N / LaRue, Rebecca S / Wang, Ying / Knutson, Todd P / Xu, Yingzheng / Williams, Jesse W / Schwertfeger, Kathryn L

    Cancer research

    2021  Volume 81, Issue 20, Page(s) 5284–5295

    Abstract: While macrophages are among the most abundant immune cell type found within primary and metastatic mammary tumors, how their complexity and heterogeneity change with metastatic progression remains unknown. Here, macrophages were isolated from the lungs ... ...

    Abstract While macrophages are among the most abundant immune cell type found within primary and metastatic mammary tumors, how their complexity and heterogeneity change with metastatic progression remains unknown. Here, macrophages were isolated from the lungs of mice bearing orthotopic mammary tumors for single-cell RNA sequencing (scRNA-seq). Seven distinct macrophage clusters were identified, including populations exhibiting enhanced differential expression of genes related to antigen presentation (
    MeSH term(s) Animals ; Apoptosis ; Biomarkers, Tumor/genetics ; Biomarkers, Tumor/metabolism ; Breast Neoplasms/genetics ; Breast Neoplasms/immunology ; Breast Neoplasms/metabolism ; Breast Neoplasms/pathology ; Cell Proliferation ; Extracellular Vesicles/metabolism ; Extracellular Vesicles/pathology ; Female ; Gene Expression Regulation, Neoplastic ; Humans ; Immunosuppression Therapy ; Lipids/chemistry ; Lung Neoplasms/genetics ; Lung Neoplasms/immunology ; Lung Neoplasms/metabolism ; Lung Neoplasms/secondary ; Macrophages/classification ; Macrophages/immunology ; Mice ; Mice, Inbred BALB C ; Mice, Nude ; RNA-Seq ; Tumor Cells, Cultured ; Xenograft Model Antitumor Assays
    Chemical Substances Biomarkers, Tumor ; Lipids
    Language English
    Publishing date 2021-08-13
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 1432-1
    ISSN 1538-7445 ; 0008-5472
    ISSN (online) 1538-7445
    ISSN 0008-5472
    DOI 10.1158/0008-5472.CAN-21-0101
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Tracking progesterone receptor-mediated actions in breast cancer.

    Knutson, Todd P / Lange, Carol A

    Pharmacology & therapeutics

    2013  Volume 142, Issue 1, Page(s) 114–125

    Abstract: Ovarian steroid hormones contribute to breast cancer initiation and progression primarily through the actions of their nuclear transcription factors, the estrogen receptor alpha (ERα) and progesterone receptors (PRs). These receptors are important ... ...

    Abstract Ovarian steroid hormones contribute to breast cancer initiation and progression primarily through the actions of their nuclear transcription factors, the estrogen receptor alpha (ERα) and progesterone receptors (PRs). These receptors are important drivers of the luminal A and B subtypes of breast cancer, where estrogen-blocking drugs have been effective endocrine therapies for patients with these tumors. However, many patients do not respond, or become resistant to treatment. When endocrine therapies fail, the luminal subtypes of breast cancer are more difficult to treat because these subtypes are among the most heterogeneous in terms of mutation diversity and gene expression profiles. Recent evidence suggests that progestin and PR actions may be important drivers of luminal breast cancers. Clinical trial data has demonstrated that hormone replacement therapy with progestins drives invasive breast cancer and results in greater mortality. PR transcriptional activity is dependent upon cross-talk with growth factor signaling pathways that alter PR phosphorylation, acetylation, or SUMOylation as mechanisms for regulating PR target gene selection required for increased cell proliferation and survival. Site-specific PR phosphorylation is the primary driver of gene-selective PR transcriptional activity. However, PR phosphorylation and heightened transcriptional activity is coupled to rapid PR protein degradation; the range of active PR detected in tumors is likely to be dynamic. Thus, PR target gene signatures may provide a more accurate means of tracking PR's contribution to tumor progression rather than standard clinical protein-based (IHC) assays. Further development of antiprogestin therapies should be considered alongside antiestrogens and aromatase inhibitors.
    MeSH term(s) Animals ; Antineoplastic Agents/pharmacology ; Antineoplastic Agents/therapeutic use ; Breast Neoplasms/drug therapy ; Breast Neoplasms/metabolism ; Breast Neoplasms/prevention & control ; Estrogen Receptor Modulators/pharmacology ; Estrogen Receptor Modulators/therapeutic use ; Female ; Humans ; Mammary Glands, Human/metabolism ; Protein Processing, Post-Translational ; Receptors, Progesterone/antagonists & inhibitors ; Receptors, Progesterone/metabolism
    Chemical Substances Antineoplastic Agents ; Estrogen Receptor Modulators ; Receptors, Progesterone
    Language English
    Publishing date 2013-11-26
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, U.S. Gov't, Non-P.H.S. ; Review
    ZDB-ID 194735-7
    ISSN 1879-016X ; 0163-7258
    ISSN (online) 1879-016X
    ISSN 0163-7258
    DOI 10.1016/j.pharmthera.2013.11.010
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Dynamic regulation of steroid hormone receptor transcriptional activity by reversible SUMOylation.

    Knutson, Todd P / Lange, Carol A

    Vitamins and hormones

    2013  Volume 93, Page(s) 227–261

    Abstract: Transcription complexes containing steroid hormone receptors (SRs) have been well characterized at selected canonical target genes. More recently, the advent of whole genome technologies has allowed for complete SR transcriptome analyses in diverse cell ... ...

    Abstract Transcription complexes containing steroid hormone receptors (SRs) have been well characterized at selected canonical target genes. More recently, the advent of whole genome technologies has allowed for complete SR transcriptome analyses in diverse cell types and in response to a variety of cellular stimuli. These types of studies have revealed little overlap between the tissue or cell type-specific transcriptomes of a given SR, suggesting that all SRs are highly context-dependent transcription factors. However, the mechanisms controlling SR promoter selectivity have not been fully elucidated. Many factors may influence SR promoter selectivity, including chromatin structure, cofactor availability, and posttranslational modifications to SRs and/or their numerous coregulators; this review focuses on the impact that covalent attachment of small ubiquitin-like modifier (SUMO) moieties to SRs (i.e., SUMOylation) have on the transcriptional regulation of SR target genes.
    MeSH term(s) Animals ; Breast Neoplasms/metabolism ; Female ; Humans ; Male ; Models, Biological ; Neoplasm Proteins/biosynthesis ; Neoplasm Proteins/genetics ; Neoplasm Proteins/metabolism ; Phosphorylation ; Promoter Regions, Genetic ; Prostatic Neoplasms/metabolism ; Receptors, Steroid/biosynthesis ; Receptors, Steroid/genetics ; Receptors, Steroid/metabolism ; Sumoylation ; Transcription, Genetic ; Ubiquitination
    Chemical Substances Neoplasm Proteins ; Receptors, Steroid
    Language English
    Publishing date 2013-06-27
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 201161-x
    ISSN 2162-2620 ; 0083-6729
    ISSN (online) 2162-2620
    ISSN 0083-6729
    DOI 10.1016/B978-0-12-416673-8.00008-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Active FOXO1 Is a Key Determinant of Isoform-Specific Progesterone Receptor Transactivation and Senescence Programming.

    Diep, Caroline H / Knutson, Todd P / Lange, Carol A

    Molecular cancer research : MCR

    2016  Volume 14, Issue 2, Page(s) 141–162

    Abstract: Unlabelled: Progesterone promotes differentiation coupled to proliferation and prosurvival in the breast, but inhibits estrogen-driven growth in the reproductive tract and ovaries. Herein, it is demonstrated, using progesterone receptor (PR) isoform- ... ...

    Abstract Unlabelled: Progesterone promotes differentiation coupled to proliferation and prosurvival in the breast, but inhibits estrogen-driven growth in the reproductive tract and ovaries. Herein, it is demonstrated, using progesterone receptor (PR) isoform-specific ovarian cancer model systems, that PR-A and PR-B promote distinct gene expression profiles that differ from PR-driven genes in breast cancer cells. In ovarian cancer models, PR-A primarily regulates genes independently of progestin, while PR-B is the dominant ligand-dependent isoform. Notably, FOXO1 and the PR/FOXO1 target gene p21 (CDKN1A) are repressed by PR-A, but induced by PR-B. In the presence of progestin, PR-B, but not PR-A, robustly induced cellular senescence via FOXO1-dependent induction of p21 and p15 (CDKN2B). Chromatin immunoprecipitation (ChIP) assays performed on PR isoform-specific cells demonstrated that while each isoform is recruited to the same PRE-containing region of the p21 promoter in response to progestin, only PR-B elicits active chromatin marks. Overexpression of constitutively active FOXO1 in PR-A-expressing cells conferred robust ligand-dependent upregulation of the PR-B target genes GZMA, IGFBP1, and p21, and induced cellular senescence. In the presence of endogenous active FOXO1, PR-A was phosphorylated on Ser294 and transactivated PR-B at PR-B target genes; these events were blocked by the FOXO1 inhibitor (AS1842856). PR isoform-specific regulation of the FOXO1/p21 axis recapitulated in human primary ovarian tumor explants treated with progestin; loss of progestin sensitivity correlated with high AKT activity.
    Implications: This study indicates FOXO1 as a critical component for progesterone signaling to promote cellular senescence and reveals a novel mechanism for transcription factor control of hormone sensitivity.
    MeSH term(s) Breast Neoplasms/genetics ; Breast Neoplasms/metabolism ; Cell Line, Tumor ; Cellular Senescence/drug effects ; Cyclin-Dependent Kinase Inhibitor p21/genetics ; Cyclin-Dependent Kinase Inhibitor p21/metabolism ; Female ; Forkhead Box Protein O1 ; Forkhead Transcription Factors/genetics ; Forkhead Transcription Factors/metabolism ; Gene Expression Regulation, Neoplastic/drug effects ; Humans ; Ovarian Neoplasms/genetics ; Ovarian Neoplasms/metabolism ; Phosphorylation ; Progestins/pharmacology ; Receptors, Progesterone/genetics ; Receptors, Progesterone/metabolism ; Signal Transduction/drug effects
    Chemical Substances CDKN1A protein, human ; Cyclin-Dependent Kinase Inhibitor p21 ; FOXO1 protein, human ; Forkhead Box Protein O1 ; Forkhead Transcription Factors ; Progestins ; Receptors, Progesterone ; progesterone receptor A ; progesterone receptor B
    Language English
    Publishing date 2016-02
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2098788-2
    ISSN 1557-3125 ; 1541-7786
    ISSN (online) 1557-3125
    ISSN 1541-7786
    DOI 10.1158/1541-7786.MCR-15-0431
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Decline of transmissible gastroenteritis virus and its complex evolutionary relationship with porcine respiratory coronavirus in the United States.

    Chen, Fangzhou / Knutson, Todd P / Rossow, Stephanie / Saif, Linda J / Marthaler, Douglas G

    Scientific reports

    2019  Volume 9, Issue 1, Page(s) 3953

    Abstract: The epidemiology and genetic diversity of transmissible gastroenteritis virus (TGEV) in the United States (US) was investigated by testing clinical cases for TGEV by real time RT-PCR between January 2008 and November 2016. Prevalence of TGEV ranged ... ...

    Abstract The epidemiology and genetic diversity of transmissible gastroenteritis virus (TGEV) in the United States (US) was investigated by testing clinical cases for TGEV by real time RT-PCR between January 2008 and November 2016. Prevalence of TGEV ranged between 3.8-6.8% and peaked during cold months until March 2013, in which prevalence decreased to < 0.1%. Nineteen complete TGEV genomes and a single strain of porcine respiratory coronavirus (PRCV) from the US were generated and compared to historical strains to investigate the evolution of these endemic coronaviruses. Sixteen of our TGEV strains share 8 unique deletions and 119 distinct amino acid changes, which might greatly affect the biological characteristics of the variant TGEV, and resulted in a "variant" genotype of TGEV. The "variant" genotype shared similar unique deletions and amino acid changes with the recent PRCV strain identified in this study, suggesting a recombination event occurred between the ''variant'' TGEV and PRCV. Moreover, the results indicate the "variant" genotype is the dominant genotype circulating in the US. Therefore, this study provides insight into the occurrence, origin, genetic characteristics, and evolution of TGEV and PRCV circulating in the US.
    MeSH term(s) Animals ; Coronavirus Infections/epidemiology ; Coronavirus Infections/veterinary ; Coronavirus Infections/virology ; Evolution, Molecular ; Gastroenteritis, Transmissible, of Swine/epidemiology ; Gastroenteritis, Transmissible, of Swine/virology ; Genome, Viral/genetics ; INDEL Mutation/genetics ; Phylogeny ; Porcine Respiratory Coronavirus/genetics ; Real-Time Polymerase Chain Reaction ; Recombination, Genetic/genetics ; Sequence Alignment/veterinary ; Swine/virology ; Transmissible gastroenteritis virus/genetics ; United States/epidemiology
    Keywords covid19
    Language English
    Publishing date 2019-03-08
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-019-40564-z
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Semi-quantitative duplex RT-PCR reveals the low occurrence of Porcine Pegivirus and Atypical Porcine Pestivirus in diagnostic samples from the United States.

    Chen, Fangzhou / Knutson, Todd P / Braun, Eli / Jiang, Yin / Rossow, Stephanie / Marthaler, Douglas G

    Transboundary and emerging diseases

    2019  Volume 66, Issue 3, Page(s) 1420–1425

    Abstract: Porcine Pegivirus (PPgV) and Atypical Porcine Pestivirus (APPV) are two recently identified porcine viruses. In this study, the identification of two viruses by metagenomic sequencing, and a duplex semi-quantitative RT-PCR was developed to detect these ... ...

    Abstract Porcine Pegivirus (PPgV) and Atypical Porcine Pestivirus (APPV) are two recently identified porcine viruses. In this study, the identification of two viruses by metagenomic sequencing, and a duplex semi-quantitative RT-PCR was developed to detect these pathogens simultaneously. The PPgV strain Minnesota-1/2016 had a 95.5%-96.3% nucleotide identity and clustered with the recently identified US PPgV strains, which is a distant clade from the German PPgV strains. The APPV strain Minnesota-1/2016 shared an 87.3%-92.0% nucleotide identity with the other global APPV strains identity but only shared an 82.8%-83.0% nucleotide identity with clade II consisting of strain identified in China. Detection of both PPgV and APPV was 9.0% of the diagnostic cases. Co-infection of PPgV and APPV was identified in 7.5% of the diagnostic cases. The occurrence and genetic characterization of PPgV and APPV further enhance our knowledge regarding these new pathogens in the United States.
    MeSH term(s) Animals ; Coinfection/veterinary ; Flaviviridae/genetics ; Flaviviridae/isolation & purification ; Flaviviridae Infections/epidemiology ; Flaviviridae Infections/veterinary ; Flaviviridae Infections/virology ; Metagenomics ; Minnesota/epidemiology ; Pestivirus/genetics ; Pestivirus/isolation & purification ; Pestivirus Infections/epidemiology ; Pestivirus Infections/veterinary ; Pestivirus Infections/virology ; Phylogeny ; Reverse Transcriptase Polymerase Chain Reaction/veterinary ; Swine ; Swine Diseases/epidemiology ; Swine Diseases/virology ; United States/epidemiology
    Language English
    Publishing date 2019-03-21
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 2414822-2
    ISSN 1865-1682 ; 1865-1674
    ISSN (online) 1865-1682
    ISSN 1865-1674
    DOI 10.1111/tbed.13154
    Database MEDical Literature Analysis and Retrieval System OnLINE

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