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Article ; Online: Disease Ecology of Rickettsial Species: A Data Science Approach.

Morand, Serge / Chaisiri, Kittipong / Kritiyakan, Anamika / Kumlert, Rawadee

Tropical medicine and infectious disease

2020 Volume 5, Issue 2

Abstract: We present an approach to assess the disease ecology of rickettsial species by investigating open databases and by using data science methodologies. First, we explored the epidemiological trend and changes of human rickettsial disease epidemics over the ... ...

Abstract	We present an approach to assess the disease ecology of rickettsial species by investigating open databases and by using data science methodologies. First, we explored the epidemiological trend and changes of human rickettsial disease epidemics over the years and compared this trend with knowledge on emerging rickettsial diseases given by published reviews. Second, we investigated the global diversity of rickettsial species recorded in humans, domestic animals and wild mammals, using the Enhanced Infectious Disease Database (EID2) and employing a network analysis approach to represent and quantify transmission ecology of rickettsial species among their carriers, arthropod vectors or mammal reservoirs and humans. Our results confirmed previous studies that emphasized the increasing incidence in rickettsial diseases at the onset of 1970. Using the Global Infectious Diseases and Epidemiology Online Network (GIDEON) database, it was even possible to date the start of this increase of global outbreaks in rickettsial diseases in 1971. Network analysis showed the importance of domestic animals and peridomestic mammals in sharing rickettsial diseases with humans and other wild animals, acting as important hubs or connectors for rickettsial transmission.
Language	English
Publishing date	2020-04-27
Publishing country	Switzerland
Document type	Journal Article
ISSN	2414-6366
ISSN (online)	2414-6366
DOI	10.3390/tropicalmed5020064
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article: One Health

Sudatip, Duangdao / Tiengrim, Surapee / Chasiri, Kittipong / Kritiyakan, Anamika / Phanprasit, Wantanee / Morand, Serge / Thamlikitkul, Visanu

Antibiotics (Basel, Switzerland)

2022 Volume 11, Issue 5

Abstract: Integrated surveillance of antimicrobial resistance (AMR) using ... ...

Abstract	Integrated surveillance of antimicrobial resistance (AMR) using the
Language	English
Publishing date	2022-04-21
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	2681345-2
ISSN	2079-6382
ISSN	2079-6382
DOI	10.3390/antibiotics11050556
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Article ; Online: A protocol and a data-based prediction to investigate virus spillover at the wildlife interface in human-dominated and protected habitats in Thailand: The Spillover Interface project.

Thinphovong, Chuanphot / Nordstrom-Schuler, Ewan / Soisook, Pipat / Kritiyakan, Anamika / Chakngean, Ronnakrit / Prapruti, Sakarin / Tanita, Malee / Paladsing, Yossapong / Makaew, Phurin / Pimsai, Awatsaya / Samoh, Abdulloh / Mahuzier, Christophe / Morand, Serge / Chaisiri, Kittipong / Phimpraphai, Waraphon

PloS one

2024 Volume 19, Issue 1, Page(s) e0294397

Abstract: The Spillover Interface Project aims at assessing the encounter of wildlife, domestic animals, and humans along a landscape gradient from a protected area to a residential community, through areas of reforestation and agricultural land. Here, we present ... ...

Abstract	The Spillover Interface Project aims at assessing the encounter of wildlife, domestic animals, and humans along a landscape gradient from a protected area to a residential community, through areas of reforestation and agricultural land. Here, we present the protocols of the project that combine virus screening in humans, bats, rodents and dogs with camera trapping, land-use characterization, and network analyses. The project is taking place in the sub-district of Saen Thong (Nan Province, Thailand) in collaboration with local communities, the District Public Health Office, and Nanthaburi National Park. To formulate a predictive hypothesis for the Spillover Interface Project, we assess the wildlife diversity and their viral diversity that could be observed in Saen Thong through a data science analysis approach. Potential mammalian species are estimated using data from the International Union for Conservation of Nature (IUCN) and their associated viral diversity from a published open database. A network analysis approach is used to represent and quantify the transmission of the potential viruses hosted by the mammals present in Saen Thong, according to the IUCN. A total of 57 viruses are expected to be found and shared between 43 host species, including the domestic dog and the human species. By following the protocols presented here, the Spillover Interface Project will collect the data and samples needed to test this data-driven prediction.
MeSH term(s)	Animals ; Humans ; Dogs ; Animals, Wild ; Thailand/epidemiology ; Ecosystem ; Animals, Domestic ; Mammals ; Chiroptera ; Viruses
Language	English
Publishing date	2024-01-02
Publishing country	United States
Document type	Journal Article
ZDB-ID	2267670-3
ISSN	1932-6203 ; 1932-6203
ISSN (online)	1932-6203
ISSN	1932-6203
DOI	10.1371/journal.pone.0294397
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Article ; Online: Risk factors analysis for neglected human rickettsioses in rural communities in Nan province, Thailand: A community-based observational study along a landscape gradient.

Chaisiri, Kittipong / Tanganuchitcharnchai, Ampai / Kritiyakan, Anamika / Thinphovong, Chuanphot / Tanita, Malee / Morand, Serge / Blacksell, Stuart D

PLoS neglected tropical diseases

2022 Volume 16, Issue 3, Page(s) e0010256

Abstract: In this study, we estimated exposure for Scrub typhus (STG), Typhus (TG) and Spotted fever groups (SFG) rickettsia using serology at a fine scale (a whole sub-district administration level) of local communities in Nan Province, Thailand. Geographical ... ...

Abstract	In this study, we estimated exposure for Scrub typhus (STG), Typhus (TG) and Spotted fever groups (SFG) rickettsia using serology at a fine scale (a whole sub-district administration level) of local communities in Nan Province, Thailand. Geographical characteristics of the sub-district were divided into two landscape types: lowland agricultural area in an urbanized setting (lowland-urbanized area) and upland agricultural area located close to a protected area of National Park (upland-forested area). This provided an ideal contrast between the two landscapes with low and high levels of human-altered habitats to study in differences in disease ecology. In total, 824 serum samples of participants residing in the eight villages were tested by screening IgG ELISA, and subsequently confirmed by the gold standard IgG Immunofluorescent Assay (IFA). STG and TG IgG positivity were highest with seroprevalence of 9.8% and 9.0%, respectively; whereas SFG positivity was lower at 6.9%. Inhabitants from the villages located in upland-forested area demonstrated significantly higher STG exposure, compared to those villages in the lowland-urbanized area (chi-square = 51.97, p < 0.0001). In contrast, TG exposure was significantly higher in those villagers living in lowland-urbanized area (chi-square = 28.26, p < 0.0001). In addition to the effect of landscape types, generalized linear model (GLM) analysis identified socio-demographic parameters, i.e., gender, occupation, age, educational level, domestic animal ownership (dog, cattle and poultry) as influential factors to explain the level of rickettsial exposure (antibody titers) in the communities. Our findings raise the public health awareness of rickettsiosis as a cause of undiagnosed febrile illness in the communities.
MeSH term(s)	Animals ; Antibodies, Bacterial ; Cattle ; Dogs ; Humans ; Rickettsia ; Rickettsia Infections/diagnosis ; Rickettsia Infections/epidemiology ; Risk Factors ; Rural Population ; Scrub Typhus/diagnosis ; Seroepidemiologic Studies ; Thailand/epidemiology
Chemical Substances	Antibodies, Bacterial
Language	English
Publishing date	2022-03-23
Publishing country	United States
Document type	Journal Article ; Observational Study ; Research Support, Non-U.S. Gov't
ZDB-ID	2429704-5
ISSN	1935-2735 ; 1935-2735
ISSN (online)	1935-2735
ISSN	1935-2735
DOI	10.1371/journal.pntd.0010256
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Article ; Online: The risk of pig and chicken farming for carriage and transmission of

Sudatip, Duangdao / Mostacci, Nadezda / Tiengrim, Surapee / Thamlikitkul, Visanu / Chasiri, Kittipong / Kritiyakan, Anamika / Phanprasit, Wantanee / Thinphovong, Chuanphot / Abdallah, Rim / Baron, Sophie Alexandra / Rolain, Jean-Marc / Morand, Serge / Oppliger, Anne / Hilty, Markus

Microbial genomics

2023 Volume 9, Issue 3

Abstract: South-East Asian countries report a high prevalence of extended-spectrum cephalosporin- (ESC-) and colistin- ... ...

Abstract	South-East Asian countries report a high prevalence of extended-spectrum cephalosporin- (ESC-) and colistin-resistant
MeSH term(s)	Animals ; Humans ; Escherichia coli/genetics ; Colistin/pharmacology ; Chickens ; Escherichia coli Proteins/genetics ; Thailand/epidemiology ; beta-Lactamases/genetics ; Farms
Chemical Substances	Colistin (Z67X93HJG1) ; Escherichia coli Proteins ; beta-Lactamases (EC 3.5.2.6) ; MCR-1 protein, E coli
Language	English
Publishing date	2023-03-23
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2835258-0
ISSN	2057-5858 ; 2057-5858
ISSN (online)	2057-5858
ISSN	2057-5858
DOI	10.1099/mgen.0.000951
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Article ; Online: Identification of the Tembusu Virus in Mosquitoes in Northern Thailand.

Hamel, Rodolphe / Vargas, Ronald Enrique Morales / Rajonhson, Dora Murielle / Yamanaka, Atsushi / Jaroenpool, Jiraporn / Wichit, Sineewanlaya / Missé, Dorothée / Kritiyakan, Anamika / Chaisiri, Kittipong / Morand, Serge / Pompon, Julien

Viruses

2023 Volume 15, Issue 7

Abstract: Among emerging zoonotic pathogens, mosquito-borne viruses (MBVs) circulate between vertebrate animals and mosquitoes and represent a serious threat to humans via spillover from enzootic cycles to the human community. Active surveillance of MBVs in their ... ...

Abstract	Among emerging zoonotic pathogens, mosquito-borne viruses (MBVs) circulate between vertebrate animals and mosquitoes and represent a serious threat to humans via spillover from enzootic cycles to the human community. Active surveillance of MBVs in their vectors is therefore essential to better understand and prevent spillover and emergence, especially at the human-animal interface. In this study, we assessed the presence of MBVs using molecular and phylogenetic methods in mosquitoes collected along an ecological gradient ranging from rural urbanized areas to highland forest areas in northern Thailand. We have detected the presence of insect specific flaviviruses in our samples, and the presence of the emerging zoonotic Tembusu virus (TMUV). Reported for the first time in 1955 in Malaysia, TMUV remained for a long time in the shadow of other flaviviruses such as dengue virus or the Japanese encephalitis virus. In this study, we identified two new TMUV strains belonging to cluster 3, which seems to be endemic in rural areas of Thailand and highlighted the genetic specificities of this Thai cluster. Our results show the active circulation of this emerging flavivirus in Thailand and the need for continuous investigation on this poorly known but threatening virus in Asia.
MeSH term(s)	Animals ; Humans ; Culicidae ; Phylogeny ; Thailand/epidemiology ; Mosquito Vectors ; Flavivirus/genetics ; Culex
Language	English
Publishing date	2023-06-27
Publishing country	Switzerland
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2516098-9
ISSN	1999-4915 ; 1999-4915
ISSN (online)	1999-4915
ISSN	1999-4915
DOI	10.3390/v15071447
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Article ; Online: Agro-Environmental Determinants of Leptospirosis: A Retrospective Spatiotemporal Analysis (2004-2014) in Mahasarakham Province (Thailand).

Viroj, Jaruwan / Claude, Julien / Lajaunie, Claire / Cappelle, Julien / Kritiyakan, Anamika / Thuainan, Pornsit / Chewnarupai, Worachead / Morand, Serge

Tropical medicine and infectious disease

2021 Volume 6, Issue 3

Abstract: Leptospirosis has been recognized as a major public health concern in Thailand following dramatic outbreaks. We analyzed human leptospirosis incidence between 2004 and 2014 in Mahasarakham province, Northeastern Thailand, in order to identify the ... ...

Abstract	Leptospirosis has been recognized as a major public health concern in Thailand following dramatic outbreaks. We analyzed human leptospirosis incidence between 2004 and 2014 in Mahasarakham province, Northeastern Thailand, in order to identify the agronomical and environmental factors likely to explain incidence at the level of 133 sub-districts and 1982 villages of the province. We performed general additive modeling (GAM) in order to take the spatial-temporal epidemiological dynamics into account. The results of GAM analyses showed that the average slope, population size, pig density, cow density and flood cover were significantly associated with leptospirosis occurrence in a district. Our results stress the importance of livestock favoring leptospirosis transmission to humans and suggest that prevention and control of leptospirosis need strong intersectoral collaboration between the public health, the livestock department and local communities. More specifically, such collaboration should integrate leptospirosis surveillance in both public and animal health for a better control of diseases in livestock while promoting public health prevention as encouraged by the One Health approach.
Language	English
Publishing date	2021-06-28
Publishing country	Switzerland
Document type	Journal Article
ISSN	2414-6366
ISSN (online)	2414-6366
DOI	10.3390/tropicalmed6030115
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: High Seroprevalence of Severe Fever with Thrombocytopenia Syndrome Virus Infection among the Dog Population in Thailand.

Ishijima, Keita / Phichitraslip, Thanmaporn / Naimon, Nattakarn / Ploypichai, Preeyaporn / Kriebkajon, Benyapa / Chinarak, Torntun / Sridaphan, Jirasin / Kritiyakan, Anamika / Prasertsincharoen, Noppadol / Jittapalapong, Sathaporn / Tangcham, Kanate / Rerkamnuaychoke, Worawut / Kuroda, Yudai / Taira, Masakatsu / Tatemoto, Kango / Park, Eunsil / Virhuez-Mendoza, Milagros / Inoue, Yusuke / Harada, Michiko /

Yamamoto, Tsukasa / Nishino, Ayano / Matsuu, Aya / Maeda, Ken

Viruses

2023 Volume 15, Issue 12

Abstract: Severe fever with thrombocytopenia syndrome (SFTS) is an emerging tick-borne zoonotic disease caused by the SFTS virus (SFTSV). In Thailand, three human cases of SFTS were reported in 2019 and 2020, but there was no report of SFTSV infection in animals. ... ...

Abstract	Severe fever with thrombocytopenia syndrome (SFTS) is an emerging tick-borne zoonotic disease caused by the SFTS virus (SFTSV). In Thailand, three human cases of SFTS were reported in 2019 and 2020, but there was no report of SFTSV infection in animals. Our study revealed that at least 16.6% of dogs in Thailand were seropositive for SFTSV infection, and the SFTSV-positive dogs were found in several districts in Thailand. Additionally, more than 70% of the serum samples collected at one shelter possessed virus-neutralization antibodies against SFTSV and the near-complete genome sequences of the SFTSV were determined from one dog in the shelter. The dog SFTSV was genetically close to those from Thailand and Chinese patients and belonged to genotype J3. These results indicated that SFTSV has already spread among animals in Thailand.
MeSH term(s)	Animals ; Humans ; Dogs ; Severe Fever with Thrombocytopenia Syndrome/epidemiology ; Severe Fever with Thrombocytopenia Syndrome/veterinary ; Bunyaviridae Infections/epidemiology ; Bunyaviridae Infections/veterinary ; Seroepidemiologic Studies ; Thailand/epidemiology ; Antibodies, Viral ; Phlebovirus/genetics ; Tick-Borne Diseases
Chemical Substances	Antibodies, Viral
Language	English
Publishing date	2023-12-11
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	2516098-9
ISSN	1999-4915 ; 1999-4915
ISSN (online)	1999-4915
ISSN	1999-4915
DOI	10.3390/v15122403
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Article ; Online: A One Health approach to assessing occupational exposure to antimicrobial resistance in Thailand: The FarmResist project.

Sudatip, Duangdao / Chasiri, Kittipong / Kritiyakan, Anamika / Phanprasit, Wantanee / Thinphovong, Chuanphot / Tiengrim, Surapee / Thamlikitkul, Visanu / Abdallah, Rim / Baron, Sophie Alexandra / Rolain, Jean-Marc / Morand, Serge / Hilty, Markus / Oppliger, Anne

PloS one

2021 Volume 16, Issue 1, Page(s) e0245250

Abstract: This Southeast Asia-Europe research project will use a One Health approach to identify the major parameters responsible for the presence of animal-associated antimicrobial resistant bacteria in animal production facilities in Thailand and the risk of ... ...

Abstract	This Southeast Asia-Europe research project will use a One Health approach to identify the major parameters responsible for the presence of animal-associated antimicrobial resistant bacteria in animal production facilities in Thailand and the risk of their transmission from animals to humans. We will focus on traditional, small, extensive pig and poultry farms where information on antibiotic use is scarce and animals live in close contact with humans. This cross-sectional study will be based on the epidemiological analysis of the antimicrobial resistance (AMR) present in fecal samples from animals and humans. Extended spectrum beta-lactamase producing Enterobacteriaceae (ESBL-E) and Enterobacteriaceae resistant to colistin will be actively searched in the feces of farm animals (pigs and poultry), small wild rodents and farmers. Phenotypic (selective plating) and genotypic (multilocus seuquence typing and sequencing) methods will be used for the detection of AMR, the identification of antibiotic resistance genes (ARGs) and the characterization of strains carrying resistance genes. Questionnaires will be administered to investigate the effects of antibiotic use, farm characteristics and biosecurity measures on the occurrence of AMR in animals. Subsequently, the fecal carriage of AMR and ARGs in farmers will be compared to a control population with no occupational contacts with animals, thus enabling an estimation of the risk of transmission of AMR/ARGs from animals to farmers.
MeSH term(s)	Animals ; Anti-Bacterial Agents/pharmacology ; Chickens ; Colistin/pharmacology ; Cross-Sectional Studies ; DNA, Bacterial/chemistry ; DNA, Bacterial/metabolism ; Drug Resistance, Bacterial/drug effects ; Drug Resistance, Bacterial/genetics ; Enterobacteriaceae/drug effects ; Enterobacteriaceae/enzymology ; Enterobacteriaceae/isolation & purification ; Enterobacteriaceae Infections/microbiology ; Enterobacteriaceae Infections/transmission ; Farmers/psychology ; Feces/microbiology ; Humans ; Multilocus Sequence Typing ; Occupational Exposure ; Surveys and Questionnaires ; Swine ; Thailand ; Whole Genome Sequencing ; beta-Lactamases/genetics
Chemical Substances	Anti-Bacterial Agents ; DNA, Bacterial ; beta-Lactamases (EC 3.5.2.6) ; Colistin (Z67X93HJG1)
Language	English
Publishing date	2021-01-28
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ISSN	1932-6203
ISSN (online)	1932-6203
DOI	10.1371/journal.pone.0245250
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: Intestinal parasites in rural communities in Nan Province, Thailand: changes in bacterial gut microbiota associated with minute intestinal fluke infection.

Prommi, Ajala / Prombutara, Pinidphon / Watthanakulpanich, Dorn / Adisakwattana, Poom / Kusolsuk, Teera / Yoonuan, Tippayarat / Poodeepiyasawat, Akkarin / Homsuwan, Nirundorn / Prummongkol, Samreong / Tanita, Malee / Rattanapikul, Sungkhom / Thinphovong, Chuanphot / Kritiyakan, Anamika / Morand, Serge / Chaisiri, Kittipong

Parasitology

2020 Volume 147, Issue 9, Page(s) 972–984

Abstract: Gastrointestinal helminth infection likely affects the gut microbiome, in turn affecting host health. To investigate the effect of intestinal parasite status on the gut microbiome, parasitic infection surveys were conducted in communities in Nan Province, ...

Abstract	Gastrointestinal helminth infection likely affects the gut microbiome, in turn affecting host health. To investigate the effect of intestinal parasite status on the gut microbiome, parasitic infection surveys were conducted in communities in Nan Province, Thailand. In total, 1047 participants submitted stool samples for intestinal parasite examination, and 391 parasite-positive cases were identified, equating to an infection prevalence of 37.3%. Intestinal protozoan species were less prevalent (4.6%) than helminth species. The most prevalent parasite was the minute intestinal fluke Haplorchis taichui (35.9%). Amplicon sequencing of 16S rRNA was conducted to investigate the gut microbiome profiles of H. taichui-infected participants compared with those of parasite-free participants. Prevotella copri was the dominant bacterial operational taxonomic unit (OTU) in the study population. The relative abundance of three bacterial taxa, Ruminococcus, Roseburia faecis and Veillonella parvula, was significantly increased in the H. taichui-infected group. Parasite-negative group had higher bacterial diversity (α diversity) than the H. taichui-positive group. In addition, a significant difference in bacterial community composition (β diversity) was found between the two groups. The results suggest that H. taichui infection impacts the gut microbiome profile by reducing bacterial diversity and altering bacterial community structure in the gastrointestinal tract.
MeSH term(s)	Adolescent ; Adult ; Aged ; Aged, 80 and over ; Animals ; Bacteria/isolation & purification ; Child ; Child, Preschool ; Female ; Gastrointestinal Microbiome ; Humans ; Infant ; Infant, Newborn ; Intestinal Diseases, Parasitic/complications ; Male ; Middle Aged ; Rural Population ; Thailand ; Trematoda/physiology ; Young Adult
Language	English
Publishing date	2020-05-04
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	207627-5
ISSN	1469-8161 ; 0031-1820
ISSN (online)	1469-8161
ISSN	0031-1820
DOI	10.1017/S0031182020000736
Database	MEDical Literature Analysis and Retrieval System OnLINE

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