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Article ; Online: New karyotype information for Ctenomys (Rodentia: Ctenomyidae) from Midwest and Northern Brazil.

de Oliveira, Thays Duarte / Bertocchi, Natasha A / Kubiak, Bruno Busnello / Galiano, Daniel / Althoff, Sérgio Luiz / de Freitas, Thales R O

Cytogenetic and genome research

2024

Abstract: Its wide karyotypic variation characterizes the genus Ctenomys, and in Brazil, the genus is distributed in the country's southern, Midwest, and Northern regions. Recently, populations of Ctenomys have been found in the Midwest and northern Brazil, with ... ...

Abstract	Its wide karyotypic variation characterizes the genus Ctenomys, and in Brazil, the genus is distributed in the country's southern, Midwest, and Northern regions. Recently, populations of Ctenomys have been found in the Midwest and northern Brazil, with two new lineages named C. sp. "xingu" and C. sp. "central". This work combines classical cytogenetic and molecular analyses to provide new chromosomal information on the boliviensis group distributed in Northern and Midwestern Brazil. This includes the validation of the karyotype of C. bicolor and C. nattereri, and the description of the karyotype of C. sp. "xingu" and C. sp. "central". We found three different karyotypes: 2n=40 for C. bicolor; 2n= 36 for C. nattereri, and specimens from a locality belonging to C. sp. "central"; 2n=34 for the lineage C. sp. "xingu" and specimens from a locality belonging to C. sp. "central". Furthermore, GTG-banding revealed homologous chromosomes between species/lineages and allowed the identification of the rearrangements that occurred, which proved the occurrence of fissions. Considering our results on the variation of 2n in the boliviensis group, we found two possibilities: the first, deduced by parsimony, is that 2n=36 appeared initially, and two fissions produced gave rise to 2n=40, and an independent fusion gave rise to 2n=34 from 2n=36; moreover, the second explanation is that all karyotypes arose independently.
Language	English
Publishing date	2024-02-23
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	2087824-2
ISSN	1424-859X ; 1424-8581
ISSN (online)	1424-859X
ISSN	1424-8581
DOI	10.1159/000538014
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Article ; Online: Oxidative status of Ctenomys flamarioni (Rodentia: Ctenomyidae) in natural areas with different levels of anthropic activity in southern Brazil.

Izidoro, Tays Daiane / Grott, Suelen Cristina / Kubiak, Bruno Busnello / de Freitas, Thales Renato Ochotorena / Alves, Thiago Caique / Almeida, Eduardo Alves / Galiano, Daniel

Environmental science and pollution research international

2023 Volume 30, Issue 23, Page(s) 64710–64718

Abstract: Rampant urbanization in coastal environments turns areas close to the seafront into a highly impacted ecosystem, possibly affecting the health and well-being of resident animal species. The tuco-tuco Ctenomys flamarioni is an endemic and endangered ... ...

Abstract	Rampant urbanization in coastal environments turns areas close to the seafront into a highly impacted ecosystem, possibly affecting the health and well-being of resident animal species. The tuco-tuco Ctenomys flamarioni is an endemic and endangered subterranean mammal from southern Brazil, and the anthropic influence was considered one of the main threats to the species. In this context, the present study aimed to investigate the patterns of oxidative status of the species in natural areas with different levels of anthropogenic disturbance. We evaluated two populations of C. flamarioni, one located in an area with intense anthropogenic impact due to urbanization and tourist activity, and the other in a non-impacted area. Oxidative injury parameters (lipid peroxidation and carbonylated protein levels), and the activities of the antioxidant enzymes superoxide dismutase, catalase, glutathione peroxidase, glucose 6-phosphate dehydrogenase, glutathione S-transferase and carboxylesterase were measured. Individuals inhabiting the impacted area had lower G6PDH activity and higher levels of carbonylated proteins. This combination of higher level of oxidative damage and lower antioxidant activity is an indication that the oxidative status of animals in the impacted population is possibly being affected as a consequence of anthropogenic activities in this environment. The values of the parameters obtained in the current study can be used as a reference of the oxidative state of C. flamarioni in future studies with tuco-tucos.
MeSH term(s)	Animals ; Brazil ; Rodentia ; Ecosystem
Language	English
Publishing date	2023-04-18
Publishing country	Germany
Document type	Journal Article
ZDB-ID	1178791-0
ISSN	1614-7499 ; 0944-1344
ISSN (online)	1614-7499
ISSN	0944-1344
DOI	10.1007/s11356-023-27083-1
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Article: New record of Juliomys ossitenuis Costa, Pavan, Leite & Fagundes, 2007 (Rodentia, Sigmodontinae) in Santa Catarina state, southern Brazil

Souza, Maíra Michalak de / Kubiak, Bruno Busnello / Maestri, Renan / Kretschmer, Rafael / Galiano, Daniel

Check list. 2020 July 01, v. 16, no. 4

2020

Abstract: Juliomys ossitenuis Costa, Pavan, Leite and Fagundes, 2007 was previously known in Brazil from the Atlantic Forest of the Southeastern Region to the Dense Ombrophilous Forest and Araucaria Forest of the Southern Region. The new record from Chapecó, in ... ...

Abstract	Juliomys ossitenuis Costa, Pavan, Leite and Fagundes, 2007 was previously known in Brazil from the Atlantic Forest of the Southeastern Region to the Dense Ombrophilous Forest and Araucaria Forest of the Southern Region. The new record from Chapecó, in Santa Catarina state, confirmed by morphological and cytogenetic analyses, extends its distribution about 300 km westwards. This is the westernmost record for the species, in a region characterized by the transition between deciduous and Araucaria forests.
Keywords	Araucaria ; Sigmodontinae ; forests ; Brazil
Language	English
Dates of publication	2020-0701
Size	p. 805-809.
Publishing place	Pensoft Publishers
Document type	Article
ZDB-ID	2252867-2
ISSN	1809-127X
ISSN	1809-127X
DOI	10.15560/16.4.805
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Article: Genetic diversity and conservation of the endemic tuco-tuco Ctenomys ibicuiensis (Rodentia: Ctenomyidae)

Medeiros, Mayara Delagnelo / Galiano, Daniel / Kubiak, Bruno Busnello / Roratto, Paula Angélica / Ochotorena de Freitas, Thales Renato

Journal of mammalogy. 2020 Oct. 13, v. 101, no. 6

2020

Abstract: Endemic, small range species are susceptible to environmental changes and landscape modification. Understanding genetic diversity and distributional patterns is important for implementation of effective conservation measures. In this context, genetic ... ...

Abstract	Endemic, small range species are susceptible to environmental changes and landscape modification. Understanding genetic diversity and distributional patterns is important for implementation of effective conservation measures. In this context, genetic diversity was evaluated to update the conservation status of an endemic tuco-tuco, Ctenomys ibicuiensis. Phylogeographic and population genetic analyses of mitochondrial DNA and microsatellite loci were carried out using 46 individuals sampled across the species' distribution. Ctenomys ibicuiensis presented moderate to high genetic diversity and highly structured populations with low levels of gene flow and isolation by distance. Anthropogenic landscape changes threaten this restricted-range tuco-tuco. Considering its limited geographic distribution and highly structured populations with low gene flow, we consider C. ibicuiensis to be at significant risk of extinction.
Keywords	Ctenomys ; conservation status ; extinction ; gene flow ; genetic variation ; geographical distribution ; landscapes ; mammalogy ; microsatellite repeats ; mitochondrial DNA ; phylogeography ; risk
Language	English
Dates of publication	2020-1013
Size	p. 1578-1586.
Publishing place	American Society of Mammalogists
Document type	Article
Note	NAL-light
ZDB-ID	218314-6
ISSN	0022-2372
ISSN	0022-2372
DOI	10.1093/jmammal/gyaa119
Database	NAL-Catalogue (AGRICOLA)

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Article ; Online: Sharing the space: distribution, habitat segregation and delimitation of a new sympatric area of subterranean rodents.

Kubiak, Bruno Busnello / Galiano, Daniel / de Freitas, Thales Renato Ochotorena

PloS one

2015 Volume 10, Issue 4, Page(s) e0123220

Abstract: Subterranean rodents of the genus Ctenomys usually present an allopatric or parapatric distribution. Currently, two cases of sympatry have been recognized for the genus in the coastal dunes of southern Argentina and southern Brazil. In this context, they ...

Abstract	Subterranean rodents of the genus Ctenomys usually present an allopatric or parapatric distribution. Currently, two cases of sympatry have been recognized for the genus in the coastal dunes of southern Argentina and southern Brazil. In this context, they are ideal models to test hypotheses about the factors that delimit the patterns of space use and to understand interspecific interactions in small mammals. We investigated the vegetation structure, plant biomass and soil hardness selected by two species of subterranean rodents (Ctenomys flamarioni and C. minutus) when distributed in sympatry and allopatry from nine different areas along the line of coastal dunes in southern Brazil. In addition, our work presents a new record of a third area of sympatry for the genus Ctenomys. Ctenomys flamarioni and C. minutus show habitat segregation in the area where they occur in sympatry. These species show segregation in their selection of microhabitats, differing in relation to soil hardness, plant biomass, and plant cover. Ctenomys flamarioni showed a distinction in habitat selection when occurring in allopatry and sympatry, whereas C. minutus selected the same habitat characteristics under both conditions. A possible explanation to the observed pattern is that these species have acquired different adaptations over time which allows them the ability to exploit different resources and thus avoid competitive interactions all together.
MeSH term(s)	Acclimatization/genetics ; Animals ; Argentina ; Brazil ; Ecosystem ; Genetic Speciation ; Plants ; Rodentia/genetics ; Soil ; Species Specificity ; Sympatry/genetics
Chemical Substances	Soil
Language	English
Publishing date	2015-04-09
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2267670-3
ISSN	1932-6203 ; 1932-6203
ISSN (online)	1932-6203
ISSN	1932-6203
DOI	10.1371/journal.pone.0123220
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Article ; Online: Hybridization between subterranean tuco-tucos (Rodentia, Ctenomyidae) with contrasting phylogenetic positions.

Kubiak, Bruno Busnello / Kretschmer, Rafael / Leipnitz, Leonardo Trindade / Maestri, Renan / de Almeida, Thamara Santos / Borges, Leandro Rodrigues / Galiano, Daniel / Pereira, Jorge C / de Oliveira, Edivaldo Herculano Corrêa / Ferguson-Smith, Malcolm A / de Freitas, Thales Renato Ochotorena

Scientific reports

2020 Volume 10, Issue 1, Page(s) 1502

Abstract: Reproductive compatibility usually decreases according to increasing genetic difference and the time of divergence between species. However, the amount of modification required to influence hybridization may vary in different species. Thus, it is ... ...

Abstract	Reproductive compatibility usually decreases according to increasing genetic difference and the time of divergence between species. However, the amount of modification required to influence hybridization may vary in different species. Thus, it is extremely important to conduct studies that seek to understand what and how variables influence the reproductive isolation of species. We have explored a system involving two species of subterranean rodents that present morphological, karyotypic, and evolutionary history differences and are capable of generating hybrids. To gain insight into the karyotype organization of genus Ctenomys, we examined the chromosome evolution by classical and molecular cytogenetics of both parental species and hybrids. Furthermore, we have used different approaches to analyze the differences between the parental species and the hybrids, and determined the origin of the hybrids. The results of our work demonstrate unequivocally that some species that present extensive differences in chromosome organization, phenotype, evolutionary history, sperm morphology and genetic, which are usually associated with reproductive isolation, can generate natural hybrids. The results also demonstrate that females of both species are able to generate hybrids with males of the other species. In addition, the chromosome-specific probes prepared from Ctenomys flamarioni provide an invaluable tool for comparative cytogenetics in closely related species.
MeSH term(s)	Animals ; Chromosome Painting ; Cytogenetic Analysis ; DNA, Mitochondrial/genetics ; Female ; Genetic Speciation ; Hybridization, Genetic ; Karyotyping ; Male ; Microsatellite Repeats ; Phylogeny ; Reproductive Isolation ; Rodentia/anatomy & histology ; Rodentia/classification ; Rodentia/genetics ; Skull/anatomy & histology ; Species Specificity
Chemical Substances	DNA, Mitochondrial
Language	English
Publishing date	2020-01-30
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2615211-3
ISSN	2045-2322 ; 2045-2322
ISSN (online)	2045-2322
ISSN	2045-2322
DOI	10.1038/s41598-020-58433-5
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Article ; Online: Ecological specialization and niche overlap of subterranean rodents inferred from DNA metabarcoding diet analysis.

Lopes, Carla Martins / De Barba, Marta / Boyer, Frédéric / Mercier, Céline / Galiano, Daniel / Kubiak, Bruno Busnello / Maestri, Renan / da Silva Filho, Pedro Joel Silva / Gielly, Ludovic / Coissac, Eric / de Freitas, Thales Renato Ochotorena / Taberlet, Pierre

Molecular ecology

2020 Volume 29, Issue 16, Page(s) 3144–3154

Abstract: Knowledge of how animal species use food resources available in the environment can increase our understanding of many ecological processes. However, obtaining this information using traditional methods is difficult for species feeding on a large variety ...

Abstract	Knowledge of how animal species use food resources available in the environment can increase our understanding of many ecological processes. However, obtaining this information using traditional methods is difficult for species feeding on a large variety of food items in highly diverse environments. We amplified the DNA of plants for 306 scat and 40 soil samples, and applied an environmental DNA metabarcoding approach to investigate food preferences, degree of diet specialization and diet overlap of seven herbivore rodent species of the genus Ctenomys distributed in southern and midwestern Brazil. The metabarcoding approach revealed that these species consume more than 60% of the plant families recovered in soil samples, indicating generalist feeding habits of ctenomyids. The family Poaceae was the most common food resource retrieved in scats of all species as well in soil samples. Niche overlap analysis indicated high overlap in the plant families and molecular operational taxonomic units consumed, mainly among the southern species. Interspecific differences in diet composition were influenced, among other factors, by the availability of resources in the environment. In addition, our results provide support for the hypothesis that the allopatric distributions of ctenomyids allow them to exploit the same range of resources when available, possibly because of the absence of interspecific competition.
MeSH term(s)	Animals ; Brazil ; DNA Barcoding, Taxonomic ; Diet ; Herbivory ; Rodentia/genetics
Language	English
Publishing date	2020-07-30
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	1126687-9
ISSN	1365-294X ; 0962-1083
ISSN (online)	1365-294X
ISSN	0962-1083
DOI	10.1111/mec.15549
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Article: Small mammals in Araucaria rain forest: linking vegetal components and the arthropod fauna with rodent community

Galiano, Daniel / Kubiak, Bruno Busnello / Estevan, Cassiano / Moraes, Rodrigo Milton / Malysz, Marcelo / Hepp, Luiz Ubiratan / Marinho, Jorge Reppold / de Freitas, Thales Renato Ochotorena

Studies on neotropical fauna and environment. 2014 Sept. 2, v. 49, no. 3

2014

Abstract: The abundance of small mammal species is particularly influenced by vegetation and arthropods. Studies that focus on understanding these correlations between small mammals, habitat features and resource availability will provide insights into the ... ...

Abstract	The abundance of small mammal species is particularly influenced by vegetation and arthropods. Studies that focus on understanding these correlations between small mammals, habitat features and resource availability will provide insights into the ecological processes that drive mammal communities. We investigated the correlations of the abundance of terrestrial arthropod taxa and of the abundance of trees and treelets with the composition of a small mammal community in a patch of Araucaria rain forest in southern Brazil. We established 25 stratified plots in the sampling grid of small mammals and sampled the abundances of trees, treelets and the ground arthropods. Relatively poor small mammal richness, when compared with other formations of Atlantic forest, was registered for this area of Araucaria forest, but consistent with findings for other small mammal communities in the Araucaria forest of southern Brazil. The abundance of small mammal species of the local community was associated with the abundance of trees of two species and with the abundance of treelets of four species. Regarding the arthropods, the abundance of rodents was associated only with the abundance of coleopterans. Thus, these resources may be a mechanism allowing their coexistence in the same area.
Keywords	Araucaria ; Coleoptera ; arthropods ; fauna ; habitats ; rain forests ; rodents ; small mammals ; trees ; tropics ; Brazil
Language	English
Dates of publication	2014-0902
Size	p. 185-190.
Publishing place	Taylor & Francis
Document type	Article
ZDB-ID	1483169-7
ISSN	1744-5140 ; 0165-0521
ISSN (online)	1744-5140
ISSN	0165-0521
DOI	10.1080/01650521.2014.953313
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Article ; Online: Camera trap surveys of Atlantic Forest mammals: A data set for analyses considering imperfect detection (2004-2020).

Franceschi, Ingridi Camboim / Dornas, Rubem Augusto da Paixão / Lermen, Isabel Salgueiro / Coelho, Artur Vicente Pfeifer / Vilas Boas, Ademir Henrique / Chiarello, Adriano Garcia / Paglia, Adriano Pereira / de Souza, Agnis Cristiane / Borsekowsky, Alana Rafaela / Rocha, Alessandro / Bager, Alex / de Souza, Alexander Zaidan / Lopes, Alexandre Martins Costa / de Moura, Aloysio Souza / Ferreira, Aluane Silva / García-Olaechea, Alvaro / Delciellos, Ana Cláudia / Bacellar, Ana Elisa de Faria / Campelo, Ana Kellen Nogueira /

Paschoal, Ana Maria Oliveira / Rolim, Anderson Claudino / da Silva, André Luiz Ferreira / Lanna, Andre Monnerat / da Silva, André Pereira / Guimarães, Andresa / Cardoso, Ângela / Cassol, Angelica Soligo / da Costa-Pinto, Anna Ludmilla / do Nascimento, Ariel Guilherme Santos / Fernandes, Arthur Soares / Clyvia, Aryanne / Santos, Aureo Banhos Dos / Lima-Silva, Barbara / Beisiegel, Beatriz de Mello / Luciano, Beatriz Fernandes Lima / Leopoldo, Bernardo de Faria / Krobel, Bruna Nunes / Kubiak, Bruno Busnello / Saranholi, Bruno Henrique / Correa, Bruno Senna / Sant Anna Teixeira, Caio / Ayroza, Camila Rezende / Cassano, Camila Righetto / Benitez-Riveros, Camilo / Gestich, Carla Cristina / Tedesco, Carla Denise / Gheler-Costa, Carla / Hegel, Carla Grasiele Zanin / Evangelista Junior, Carlito da Silva / Ferreira, Carlos Eduardo Morando Faria / Grelle, Carlos Eduardo Viveiros / Esteves, Carolina Franco / Espinosa, Caroline da Costa / Leuchtenberger, Caroline / Sanchéz-Lalinde, Catalina / Machado, Cauanne Iglesias Campos / Andreazzi, Cecilia / Bueno, Cecília / Cronemberger de Faria, Cecilia / Novaes, Claudio / Widmer, Cynthia Elisa / Santos, Cyntia Cavalcante / Ferraz, Daniel da Silva / Galiano, Daniel / Bôlla, Daniela Aparecida Savariz / Behs, Daniela / Rodrigues, Daniele Pereira / de Melo, Danielle Picão / Ramos, Déborah Maria Soares / de Mattia, Denise Lidório / Pavei, Diego Dias / Loretto, Diogo / Huning, Douglas da Silva / Dias, Douglas de Matos / Paetzhold, Éder Ricardo / Rios, Elaine / Setz, Eleonore Zulnara Freire / Cazetta, Eliana / Cafofo Silva, Emanuel Giovani / Pasa, Emanuelle / Saito, Erica Naomi / de Aguiar, Erick Francisco Silva / Castro, Érika Paula / Viveiros de Castro, Ernesto Bastos / Pedó, Ezequiel / Pereira, Fabiane de Aguiar / Bolzan, Fábio / Roque, Fábio de Oliveira / Mazim, Fábio Dias / Comin, Fábio Henrique / Maffei, Fábio / Peters, Felipe Bortolotto / Fantacini, Felipe Moreli / da Silva, Felipe Pessoa / Machado, Felipe Santana / Vélez-Garcia, Felipe / Lage, Fernanda Stussi Duarte / Perini, Fernando Araújo / Passos, Fernando Camargo / Carvalho, Fernando / de Azevedo, Fernando Cesar Cascelli / Ferreira, Fernando / de Pinho, Fernando Ferreira / Chaves, Flávia Guimarães / Miranda, Flavia Regina / Rodrigues, Flavio Henrique Guimarães / Ubaid, Flávio Kulaif / Gabriel, Francisco Homem / de Souza, Franco Leandro / de Oliveira, Fred Victor / Cupolillo, Gabriel / Moreira, Gabriela de Araújo Pires / Mette, Gabriela / Duarte, Gabriela Teixeira / Beca, Gabrielle / Corso, Gilberto / Perbiche-Neves, Gilmar / Souto, Glauber Henrique Borges de Oliveira / Vilarroel, Glenda Jéssica da Silva / Batista, Graziele O / Ferreira, Guilherme Braga / Toledo, Gustavo Alves da Costa / Senger, Gustavo / Bergallo, Helena de Godoy / Dos Santos, Hellen Cristina Pinheiro / Gazola, Humberto Angelo / Melo, Isabel / Brack, Ismael Verrastro / Veríssimo, Iuri / Viana, Ivan Réus / Laurentino, Izabela Costa / Diehl, Jaime Luis / Zocche, Jairo José / Martins-Silva, Jimi / Just, João Paulo Gava / Cherem, Jorge José / Nascimento, Jorge Luiz / Marinho, Jorge Reppold / Dantas, José Oliveira / de Matos, Jose Roberto / Pires, José Salatiel Rodrigues / Cerveira, Josi Fernanda / Ruiz-Esparza, Juan / da Silva, Juliana Paulo / Bogoni, Juliano André / Molina, Karina Theodoro / Pereira, Karla Dayane de Lima / Ceron, Karoline / de Vleeschouwer, Kristel / Lautenschlager, Laís / Bailey, Larissa / Fornitano, Larissa / Rampim, Lilian Elaine / Sforza, Lorena / Bissa, Luan Gonçalves / Santucci, Luca Mattos / da Silva, Lucas Gonçalves / Perillo, Lucas Neves / Correa, Lucas Ribeiro / Hufnagel, Ludmila / Alberti, Luis Fernando / Recalde Mello, Luis Jose / Bernardo, Luis Renato Rezende / Oliveira-Santos, Luiz Gustavo Rodrigues / Guimarães, Luiza Neves / Benchimol, Maíra / Twardowschy, Manuela Catharina / Ferreira-Riveros, Marcela / da Silva, Marcelo / Jardim, Márcia Maria de Assis / Fontes, Marco Aurélio Leite / Tortato, Marcos Adriano / do Nascimento, Marcos Tadeu / Sekiama, Margareth Lumy / Nascimento-Costa, Maria Clara / Dos Santos, Maria Ester Bueno / Morini, Maria Santina de Castro / Nagy-Reis, Mariana Baldy / Kaizer, Mariane da Cruz / Sant'Anna, Mariano José Ribeiro da Silva / Hartmann, Marilia Teresinha / Favarini, Marina Ochoa / Olivo, Marina Oliveira / Montes, Martín Alejandro / Alvaréz, Martin Roberto Del Valle / Haddad, Matheus Feldstein / Costa, Maurício Djalles / Graipel, Maurício Eduardo / Konzen, Mauricio Quoos / Galetti, Mauro / Almeida, Meyline de Oliveira Souza / Faria, Michel Barros / Luiz, Micheli Ribeiro / Baptista, Michelle Noronha da Matta / Marini, Miguel Ângelo / Ribeiro, Milton Cezar / Olifiers, Natalie / de Albuquerque, Natasha Moraes / Cantero, Nicolás / Peroni, Nivaldo / Zanella, Noeli / Mendonça-Furtado, Olívia / Pays, Olivier / Ferretti, Orlando Ednei / Rocha-Barbosa, Oscar / Santos, Paloma Marques / de Farias, Patrícia Menegaz / da Rocha, Patrício Adriano / Colas-Rosas, Paul François / Ribeiro-Souza, Paula / Ferracioli, Paula / Hartmann, Paulo Afonso / Antas, Paulo de Tarso Zuquim / Ribeiro, Paulo / Tomasi Sarti, Paulo / Mônico, Paulo Ivo / de Castilho, Pedro Volkmer / Pereira, Peônia Brito de Moraes / Crawshaw, Peter Gransden / Renaud, Pierre-Cyril / Romagna, Rafael Spilere / de Sousa, Rafael Turíbio Moraes / Spagnol, Raíssa Soares / Beltrão-Mendes, Raone / Mariano, Ravi Fernandes / Rocha, Renata Reinoso / Sousa-Lima, Renata / Pagotto, Renata Valls / de Faria, Rhayssa Terra / Arrais, Ricardo Corassa / Moratelli, Ricardo / Sartorello, Ricardo / Bianchi, Rita de Cassia / Guimarães, Roberto de Carvalho / Massara, Rodrigo Lima / Costa, Romulo Theodoro / Marques, Rosane Vera / Nunes, Ruan Márcio Ruas / Hartz, Sandra Maria / Silvestre de Sousa, Saulo Meneses / Lima, Saulo Ramos / Barbosa, Sergio Lutz / Godoy, Silvia Neri / Ferrari, Stephen Francis / de Araújo-Piovezan, Talita Guimarães / Góes, Talita Laura / Trigo, Tatiane Campos / de Freitas, Thales R O / Maccarini, Thiago Bernardes / de Castro, Thiago Marcial / Bella, Thiago Ribas / de Oliveira Junior, Tonny Marques / Cunha, Uslaine Maciel / Kanaan, Vanessa Tavares / Pfannerstill, Vera / Pimentel, Victor Siqueira / Picinatto Filho, Vilmar / Alves, Vinícius Nunes / Rojas-Bonzi, Viviana / Mottin, Viviane / Rocha, Vlamir José / Kindel, Andreas / Coelho, Igor Pfeifer

Ecology

2024 , Page(s) e4298

Abstract: Camera traps became the main observational method of a myriad of species over large areas. Data sets from camera traps can be used to describe the patterns and monitor the occupancy, abundance, and richness of wildlife, essential information for ... ...

Abstract	Camera traps became the main observational method of a myriad of species over large areas. Data sets from camera traps can be used to describe the patterns and monitor the occupancy, abundance, and richness of wildlife, essential information for conservation in times of rapid climate and land-cover changes. Habitat loss and poaching are responsible for historical population losses of mammals in the Atlantic Forest biodiversity hotspot, especially for medium to large-sized species. Here we present a data set from camera trap surveys of medium to large-sized native mammals (>1 kg) across the Atlantic Forest. We compiled data from 5380 ground-level camera trap deployments in 3046 locations, from 2004 to 2020, resulting in 43,068 records of 58 species. These data add to existing data sets of mammals in the Atlantic Forest by including dates of camera operation needed for analyses dealing with imperfect detection. We also included, when available, information on important predictors of detection, namely the camera brand and model, use of bait, and obstruction of camera viewshed that can be measured from example pictures at each camera location. Besides its application in studies on the patterns and mechanisms behind occupancy, relative abundance, richness, and detection, the data set presented here can be used to study species' daily activity patterns, activity levels, and spatiotemporal interactions between species. Moreover, data can be used combined with other data sources in the multiple and expanding uses of integrated population modeling. An R script is available to view summaries of the data set. We expect that this data set will be used to advance the knowledge of mammal assemblages and to inform evidence-based solutions for the conservation of the Atlantic Forest. The data are not copyright restricted; please cite this paper when using the data.
Language	English
Publishing date	2024-04-12
Publishing country	United States
Document type	Journal Article
ZDB-ID	2010140-5
ISSN	1939-9170 ; 0012-9658
ISSN (online)	1939-9170
ISSN	0012-9658
DOI	10.1002/ecy.4298
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Article ; Online: NEOTROPICAL FRESHWATER FISHES: A dataset of occurrence and abundance of freshwater fishes in the Neotropics

Tonella, Lívia Helena / Ruaro, Renata / Daga, Vanessa Salete / Garcia, Diego Azevedo Zoccal / Vitorino, Oscar Barroso, Júnior / Lobato‐de Magalhães, Tatiana / dos Reis, Roberto Esser / Di Dario, Fabio / Petry, Ana Cristina / Mincarone, Michael Maia / de Assis Montag, Luciano Fogaça / Pompeu, Paulo Santos / Teixeira, Adonias Aphoena Martins / Carmassi, Alberto Luciano / Sánchez, Alberto J. / Giraldo Pérez, Alejandro / Bono, Alessandra / Datovo, Aléssio / Flecker, Alexander S. /

Sanches, Alexandra / Godinho, Alexandre Lima / Matthiensen, Alexandre / Peressin, Alexandre / Hilsdorf, Alexandre Wagner Silva / Barufatti, Alexéia / Hirschmann, Alice / Jung, Aline / Cruz‐Ramírez, Allan K. / Braga Silva, Alline / Cunico, Almir Manoel / Saldanha Barbosa, Amanda / de Castro Barradas, Amauri / Rêgo, Ana Carolina Lacerda / Franco, Ana Clara Sampaio / Costa, Ana Paula Lula / Vidotto‐Magnoni, Ana Paula / Ferreira, Anderson / Kassner Filho, Anderson / Nobile, André Batista / Magalhães, André Lincoln Barroso / da Silva, André Teixeira / Bialetzki, Andréa / dos Santos Maroclo Gomes, Andréa Cristina / Nobre, Andrezza Bellotto / Casimiro, Armando Cesar Rodrigues / Angulo Sibaja, Arturo / dos Santos, Arthur Alexandre Capelli / de Araújo, Átila Rodrigues / Frota, Augusto / Quirino, Bárbara Angélio / Ferreira, Beatriz Moreira / Albuquerque, Bianca Weiss / Meneses, Bruna Arbo / Oliveira, Brunno Tolentino / Torres Parahyba Campos, Bruno Augusto / Gonçalves, Bruno Bastos / Kubiak, Bruno Busnello / da Silveira Prudente, Bruno / de Araujo Passos Pacheco, Bruno Gorini / Nakagawa, Bruno Kazuo / do Nascimento, Bruno Tayar Marinho / Maia, Calebe / Cantagallo Devids, Camila / Rezende, Carla Ferreira / Muñoz‐Mendoza, Carla / Peres, Carlos A. / de Sousa Rodrigues Filho, Carlos Alberto / de Lucena, Carlos Alberto Santos / Fernandes, Carlos Alexandre / Kasper, Carlos Benhur / Donascimiento, Carlos / Emidio, Carmino, Júnior / Carrillo‐Moreno, Carolina / Machado, Carolina / Pera, Carolina / Hartmann, Caroline / Pringle, Catherine M. / Leal, Cecília Gontijo / Jézéquel, Céline / Harrod, Chris / da Rosa, Clarissa Alves / Quezada‐Romegialli, Claudio / Pott, Crisla Maciel / Larentis, Crislei / Nascimento, Cristiane A. S. / da Silva Gonçalves, Cristina / da Cunha, Cristina Jaques / Pisicchio, Cristina Moreira / de Carvalho, Daniel Cardoso / Galiano, Daniel / Gomez‐Uchida, Daniel / Santana, Daniel Oliveira / Salas Johnson, Daniel / Petsch, Danielle Katharine / de Freitas, Danielly Torres Hashiguti / Bailly, Dayani / Machado, Débora Ferreira / de Carvalho, Débora Reis / Topan, Dhyego Hamilton / Cañas‐Rojas, Diego / da Silva, Diego / Freitas‐Souza, Diogo / Lima‐Júnior, Dilermando Pereira / Piscor, Diovani / Moraes, Djalma Pereira / Viana, Douglas / Caetano, Dyego Leonardo Ferraz / Gubiani, Éder André / Okada, Edson K. / do Amaral, Eduardo Cazuni / Brambilla, Eduardo Meneguzzi / Cunha, Eduardo Ribeiro / Kashiwaqui, Elaine Antoniassi Luiz / Rocha, Elise Amador / Barp, Elisete Ana / da Costa Fraga, Elmary / D'Bastiani, Elvira / Zandonà, Eugenia / Dary, Eurizângela Pereira / Benedito, Evanilde / Barba‐Macías, Everardo / Calvache Uvidia, Evelyn Vanessa / Fonseca, Fabiana Luques / Ferreira, Fabiane Silva / Lima, Fábio Batista / Maffei, Fabio / Porto‐Foresti, Fábio / Teresa, Fabrício Barreto / de Andrade Frehse, Fabrício / Oliveira, Fagner Júnior M. / da Silva, Felipe Pessoa / de Lima, Felipe Pontieri / do Prado, Fernanda Dotti / Jerep, Fernando Camargo / Vieira, Fernando Emmanuel Gonçalves / Becker, Fernando Gertum / de Carvalho, Fernando Rogério / Ubaid, Flávio Kulaif / Teixeira, Francisco Keilo / Provenzano Rizzi, Francisco / Severo‐Neto, Francisco / Villamarín, Francisco / de Mello, Franco Teixeira / Keppeler, Friedrich Wolfgang / de Avila Batista, Gabriel / de Menezes Yazbeck, Gabriel / Tesitore, Giancarlo / Salvador, Gilberto Nepomuceno / Soteroruda Brito, Gita Juan / Carmassi, Giulianna Rondineli / Kurchevski, Gregório / Goyenola, Guillermo / Pereira, Hasley Rodrigo / Alvez, Helen Jamille Fernandes Silva / do Prado, Helena Alves / Pinho, Henrique Ledo Lopes / Sousa, Híngara Leão / Bornatowski, Hugo / de Oliveira Barbosa, Hugo / Tobes, Ibon / de Paiva Affonso, Igor / Queiroz, Igor Raposo / Vila, Irma / Negrete, Iván Vinicio Jácome / Prado, Ivo Gavião / Vitule, Jean Ricardo Simões / Figueiredo‐Filho, Jessé / Gonzalez, Jessica Antúnez / de Faria Falcão, Jéssica Caroline / Teixeira, Jéssica Vieira / Pincheira‐Ulbrich, Jimmy / da Silva, Jislaine Cristina / de Araujo Filho, João Antonio / Silva, João Fernando Marques da / Genova, João Gabriel / Giovanelli, João Gabriel Ribeiro / Andriola, João Vitor Perin / Alves, Jonatas / Valdiviezo‐Rivera, Jonathan / Britto, Jorge / Botero, Jorge Iván Sánchez / Liotta, Jorge / Ramirez, Jorge Luis / Marinho, Jorge Reppold / Birindelli, José Luís Olivan / Novaes, Jose Luis Costa / Hawes, Joseph E. / Ribolli, Josiane / Rivadeneira, Juan Francisco / Schmitter‐Soto, Juan Jacobo / Assis, Juliana Camara / da Silva, Juliana Paulo / dos Santos, Juliana Silveira / Wingert, Juliana / Wojciechowski, Juliana / Bogoni, Juliano André / Ferrer, Juliano / Solórzano, Julio César Jut / Sá‐Oliveira, Júlio César / Vaini, Jussara Oliveira / Contreras Palma, Kamila / Orlandi Bonato, Karine / de Lima Pereira, Karla Dayane / dos Santos Sousa, Kassiano / Borja‐Acosta, Kevin Giancarlo / Carneiro, Laís / Faria, Larissa / de Oliveira, Leonardo Brito / Resende, Leonardo Cardoso / da Silva Ingenito, Leonardo Ferreira / Oliveira Silva, Leonardo / Rodrigues, Leydiane Nunes / Guarderas‐Flores, Lida / Martins, Lidiane / Tonini, Lorena / Braga, Lorrana Thaís Máximo Durville / Gomes, Louise Cristina / de Fries, Lucas / Silva, Lucas Gonçalves da / Jarduli, Lucas Ribeiro / Lima, Luciano Benedito / Gomes Fischer, Luciano / Wolff, Luciano Lazzarini / dos Santos, Luciano Neves / Bezerra, Luis Artur Valões / Sarmento Soares, Luisa Maria / Manna, Luisa Resende / Duboc, Luiz Fernando / dos Santos Ribas, Luiz Guilherme / Malabarba, Luiz Roberto / Brito, Marcelo Fulgêncio Guedes / Braga, Marcelo Rennó / de Almeida, Marcelo Silva / Sily, Maria Cecília / Barros, Maria Claudene / do Nascimento, Maria Histelle Sousa / de Souza Delapieve, Maria Laura / Piedade, Maria Teresa Fernandez / Tagliaferro, Marina / de Pinna, Mário Cesar Cardoso / Yánez‐Muñoz, Mario H. / Orsi, Mário Luís / da Rosa, Marlon Ferraz / Bastiani, Marlos / Stefani, Marta Severino / Buenaño‐Carriel, Martha / Moreno, Martha Elena Valdez / de Carvalho, Mateus Moreira / Kütter, Mateus Tavares / Freitas, Matheus Oliveira / Cañas‐Merino, Mauricio / Cetra, Mauricio / Herrera‐Madrid, Mauricio / Petrucio, Mauricio Mello / Galetti, M. / Salcedo, Miguel Ángel / Pascual, Miguel / Ribeiro, Milton Cezar / Abelha, Milza Celi Fedatto / da Silva, Mônica Andrade / de Araujo, Mônica Pacheco / Dias, Murilo Sversut / Guimaraes Sales, Naiara / Benone, Naraiana Loureiro / Sartor, Natane / Fontoura, Nelson Ferreira / de Souza Trigueiro, Nicholas Silvestre / Álvarez‐Pliego, Nicolás / Shibatta, Oscar Akio / Tedesco, Pablo A. / Lehmann Albornoz, Pablo Cesar / Santos, Pablo Henrique Fernandes / Freitas, Pâmela Virgolino / Fagundes, Patricia Calegari / de Freitas, Patrícia Domingues / Mena‐Valenzuela, Patricio / Tufiño, Paúl / Catelani, Paula Araujo / Peixoto, Paula / Ilha, Paulo / de Aquino, Pedro De Podestà Uchôa / Gerhard, Pedro / Carvalho, Pedro Hollanda / Jiménez‐Prado, Pedro / Galetti, Pedro Manoel, Jr / Borges, Pedro Paulino / Nitschke, Pedro Peixoto / Manoel, Pedro Sartori / Bernardes Perônico, Phamela / Soares, Philip Teles / Piana, Pitágoras Augusto / de Oliveira Cunha, Priscila / Plesley, Priscila / de Souza, Rafael Couto Rosa / Rosa, Rafael Rogério / El‐Sabaawi, Rana W. / Rodrigues, Raoni Rosa / Covain, Raphael / Loures, Raquel Coelho / Braga, Raul Rennó / Ré, Reginaldo / Bigorne, Rémy / Cassemiro Biagioni, Renata / Silvano, Renato Azevedo Matias / Dala‐Corte, Renato Bolson / Martins, Renato Tavares / Rosa, Ricardo / Sartorello, Ricardo / de Almeida Nobre, Rodrigo / Bassar, Ronald D. / Gurgel‐Lourenço, Ronaldo César / Pinheiro, Ronaldo Fernando Martins / Carneiro, Ronaldo Leal / Florido, Rosa / Mazzoni, Rosana / Silva‐Santos, Rosane / de Paula Santos, Rosiane / Delariva, Rosilene Luciana / Hartz, Sandra Maria / Brosse, Sebastien / Althoff, Sérgio Luiz / Nóbrega Marinho Furtado, Shaka / Lima‐Junior, Sidnei Eduardo / Lustosa Costa, Silvia Yasmin / Arrolho, Solange / Auer, Sonya K. / Bellay, Sybelle / de Fátima Ramos Guimarães, Taís / Francisco, Talitha Mayumi / Mantovano, Tatiane / Gomes, Tatyana / Ramos, Telton Pedro Anselmo / de Assis Volpi, Thaís / Emiliano, Thais Moura / Barbosa, Thiago Augusto Pedroso / Balbi, Thiago José / da Silva Campos, Thiago Nascimento / Silva, Thiago Teixeira / Occhi, Thiago Vinícius Trento / Garcia, Thiely Oliveira / da Silva Freitas, Tiago Magalhães / Begot, Tiago Octavio / da Silveira, Tony Leandro Rezende / Lopes, Ueslei / Schulz, Uwe Horst / Fagundes, Valéria / da Silva, Valéria Flávia Batista / Azevedo‐Santos, Valter M. / Ribeiro, Vanessa / Tibúrcio, Vanessa Graciele / de Almeida, Vera Lúcia Lescano / Isaac‐Nahum, Victoria J. / Abilhoa, Vinicius / Campos, Vinicius Farias / Kütter, Vinicius Tavares / de Mello Cionek, Vivian / Prodocimo, Viviane / Vicentin, Wagner / Martins, Waldney Pereira / de Moraes Pires, Walna Micaelle / da Graça, Weferson Júnio / Smith, Welber Senteio / Dáttilo, Wesley / Aguirre Maldonado, Windsor Efren / de Carvalho Rocha, Yuri Gomes Ponce / Súarez, Yzel Rondon / de Lucena, Zilda Margarete Seixas

Ecology. 2023 Apr., v. 104, no. 4 p.e3713-

2023

Abstract: The Neotropical region hosts 4225 freshwater fish species, ranking first among the world's most diverse regions for freshwater fishes. Our NEOTROPICAL FRESHWATER FISHES data set is the first to produce a large‐scale Neotropical freshwater fish inventory, ...

Abstract	The Neotropical region hosts 4225 freshwater fish species, ranking first among the world's most diverse regions for freshwater fishes. Our NEOTROPICAL FRESHWATER FISHES data set is the first to produce a large‐scale Neotropical freshwater fish inventory, covering the entire Neotropical region from Mexico and the Caribbean in the north to the southern limits in Argentina, Paraguay, Chile, and Uruguay. We compiled 185,787 distribution records, with unique georeferenced coordinates, for the 4225 species, represented by occurrence and abundance data. The number of species for the most numerous orders are as follows: Characiformes (1289), Siluriformes (1384), Cichliformes (354), Cyprinodontiformes (245), and Gymnotiformes (135). The most recorded species was the characid Astyanax fasciatus (4696 records). We registered 116,802 distribution records for native species, compared to 1802 distribution records for nonnative species. The main aim of the NEOTROPICAL FRESHWATER FISHES data set was to make these occurrence and abundance data accessible for international researchers to develop ecological and macroecological studies, from local to regional scales, with focal fish species, families, or orders. We anticipate that the NEOTROPICAL FRESHWATER FISHES data set will be valuable for studies on a wide range of ecological processes, such as trophic cascades, fishery pressure, the effects of habitat loss and fragmentation, and the impacts of species invasion and climate change. There are no copyright restrictions on the data, and please cite this data paper when using the data in publications.
Keywords	Astyanax fasciatus ; Cichliformes ; Cyprinodontiformes ; Gymnotiformes ; Neotropics ; Siluriformes ; climate change ; data collection ; fisheries ; freshwater ; freshwater fish ; georeferencing ; habitat destruction ; indigenous species ; introduced species ; inventories ; Argentina ; Caribbean ; Chile ; Mexico ; Paraguay ; Uruguay
Language	English
Dates of publication	2023-04
Publishing place	John Wiley & Sons, Inc.
Document type	Article ; Online
Note	JOURNAL ARTICLE
ZDB-ID	1797-8
ISSN	0012-9658
ISSN	0012-9658
DOI	10.1002/ecy.3713
Database	NAL-Catalogue (AGRICOLA)

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