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  1. Article: mTOR signaling regulates aberrant epithelial cell proliferative and migratory behaviors characteristic of airway mucous metaplasia in asthma.

    Kudrna, Katrina / Staab, Elizabeth B / Eilers, Evan / Thomes, Paul / Maurya, Shailendra / Brody, Steven L / Wyatt, Todd A / Bailey, Kristina L / Dickinson, John D

    bioRxiv : the preprint server for biology

    2024  

    Abstract: In asthma, the airway epithelium is hyperplastic, hypertrophied, and lined with numerous large MUC5AC-containing goblet cells (GC). Furthermore, the normal epithelial architecture is disorganized with numerous, what we here describe as, ectopic goblet ... ...

    Abstract In asthma, the airway epithelium is hyperplastic, hypertrophied, and lined with numerous large MUC5AC-containing goblet cells (GC). Furthermore, the normal epithelial architecture is disorganized with numerous, what we here describe as, ectopic goblet cells (eGC) deep within the thickened epithelial layer disconnected from the lumenal surface. mTOR is a highly conserved pathway that regulates cell size and proliferation. We hypothesized that the balance between mTOR and autophagy signaling regulates key features of the asthma epithelial layer. Airway histological sections from subjects with asthma had increased frequency of eGC and increased levels of mTOR phosphorylation target-Ribosomal S6. Using human airway epithelial cells (hAECs) with IL-13 stimulation and timed withdrawal to stimulate resolution, we found that multiple key downstream phosphorylation targets downstream from the mTOR complex were increased during early IL-13-mediated mucous metaplasia, and then significantly declined during resolution. The IL-13-mediated changes in mTOR signaling were paralleled by morphologic changes with airway epithelial hypertrophy, hyperplasia, and frequency of eGC. We then examined the relationship between mTOR and autophagy using mice deficient in autophagy protein Atg16L1. Despite having increased cytoplasmic mucins, mouse AECs from Atg16L1 deficient mice had no significant difference in mTOR downstream signaling. mTOR inhibition with rapamycin led to a loss of IL-13-mediated epithelial hypertrophy, hyperplasia, ectopic GC distribution, and reduction in cytoplasmic MUC5AC levels. mTOR inhibition was also associated with a reduction in aberrant IL-13-mediated hAEC proliferation and migration. Our findings demonstrate that mTOR signaling is associated with mucous metaplasia and is crucial to the disorganized airway epithelial structure and function characteristic of muco-obstructive airway diseases such as asthma.
    Graphical abstract key concepts: The airway epithelium in asthma is disorganized and characterized by cellular proliferation, aberrant migration, and goblet cell mucous metaplasia.mTOR signaling is a dynamic process during IL-13-mediated mucous metaplasia, increasing with IL-13 stimulation and declining during resolution.mTOR signaling is strongly increased in the asthmatic airway epithelium.mTOR signaling is associated with the development of key features of the metaplastic airway epithelium including cell proliferation and ectopic distribution of goblet cells and aberrant cellular migration.Inhibition of mTOR leads to decreased epithelial hypertrophy, reduced ectopic goblet cells, and cellular migration.
    Language English
    Publishing date 2024-02-14
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2024.02.12.579905
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Effect of epithelial-specific MyD88 signaling pathway on airway inflammatory response to organic dust exposure.

    Johnson, Amber N / Dickinson, John / Nelson, Amy / Gaurav, Rohit / Kudrna, Katrina / Evans, Scott E / Janike, Katherine / Wyatt, Todd A / Poole, Jill A

    Journal of immunotoxicology

    2022  Volume 20, Issue 1, Page(s) 2148782

    Abstract: The Toll-like receptor (TLR) adaptor protein MyD88 is integral to airway inflammatory response to microbial-enriched organic dust extract (ODE) exposures. ODE-induced airway neutrophil influx and release of pro-inflammatory cytokines was essentially ... ...

    Abstract The Toll-like receptor (TLR) adaptor protein MyD88 is integral to airway inflammatory response to microbial-enriched organic dust extract (ODE) exposures. ODE-induced airway neutrophil influx and release of pro-inflammatory cytokines was essentially abrogated in global MyD88-deficient mice, yet these mice demonstrate an increase in airway epithelial cell mucin expression. To further elucidate the role of MyD88-dependent responses specific to lung airway epithelial cells in response to ODE
    MeSH term(s) Animals ; Mice ; Myeloid Differentiation Factor 88/genetics ; Myeloid Differentiation Factor 88/metabolism ; Myeloid Differentiation Factor 88/pharmacology ; Inhalation Exposure/adverse effects ; Signal Transduction ; Interleukin-6/metabolism ; Toll-Like Receptors ; Tumor Necrosis Factor-alpha/metabolism ; Dust ; Mucins/metabolism ; Mucins/pharmacology ; Mice, Inbred C57BL
    Chemical Substances Myeloid Differentiation Factor 88 ; Interleukin-6 ; Toll-Like Receptors ; Tumor Necrosis Factor-alpha ; Dust ; Mucins ; Myd88 protein, mouse
    Language English
    Publishing date 2022-12-01
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S. ; Research Support, U.S. Gov't, P.H.S.
    ZDB-ID 2205064-4
    ISSN 1547-6901 ; 1547-691X
    ISSN (online) 1547-6901
    ISSN 1547-691X
    DOI 10.1080/1547691X.2022.2148782
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Purification of Hepatocytes and Sinusoidal Endothelial Cells from Mouse Liver Perfusion.

    Cabral, Fatima / Miller, Colton M / Kudrna, Katrina M / Hass, Blake E / Daubendiek, Jocelyn G / Kellar, Brianna M / Harris, Edward N

    Journal of visualized experiments : JoVE

    2018  , Issue 132

    Abstract: This protocol demonstrates a method for obtaining high yield and viability for mouse hepatocytes and sinusoidal endothelial cells (SECs) suitable for culturing or for obtaining cell lysates. In this protocol, the portal vein is used as the site for ... ...

    Abstract This protocol demonstrates a method for obtaining high yield and viability for mouse hepatocytes and sinusoidal endothelial cells (SECs) suitable for culturing or for obtaining cell lysates. In this protocol, the portal vein is used as the site for catheterization, rather than the vena cava, as this limits contamination of other possible cell types in the final liver preparation. No special instrumentation is required throughout the procedure. A water bath is used as a source of heat to maintain the temperature of all the buffers and solutions. A standard peristaltic pump is used to drive the fluid, and a refrigerated table-top centrifuge is required for the centrifugation procedures. The only limitation of this technique is the placement of the catheter within the portal vein, which is challenging on some of the mice in the 18 - 25 g size range. An advantage of this technique is that only one vein is utilized for the perfusion and the access to the vein is quick, which minimizes ischemia and reperfusion of the liver that reduces hepatic cell viability. Another advantage to this protocol is that it is easy to distinguish live from dead hepatocytes by eyesight due to the difference in cellular density during the centrifugation steps. Cells from this protocol may be used in cell culture for any downstream application as well as processed for any biochemical assessment.
    MeSH term(s) Animals ; Catheterization/methods ; Centrifugation ; Cytological Techniques/methods ; Endothelial Cells/cytology ; Hepatocytes/cytology ; Liver/cytology ; Mice ; Perfusion/methods
    Language English
    Publishing date 2018--12
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Video-Audio Media
    ISSN 1940-087X
    ISSN (online) 1940-087X
    DOI 10.3791/56993
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: 3-O sulfation of heparin leads to hepatotropism and longer circulatory half-life.

    Miller, Colton M / Xu, Yongmei / Kudrna, Katrina M / Hass, Blake E / Kellar, Brianna M / Egger, Andrew W / Liu, Jian / Harris, Edward N

    Thrombosis research

    2018  Volume 167, Page(s) 80–87

    Abstract: Introduction: Heparins are common blood anticoagulants that are critical for many surgical and biomedical procedures used in modern medicine. In contrast to natural heparin derived from porcine gut mucosa, synthetic heparins are homogenous by mass, ... ...

    Abstract Introduction: Heparins are common blood anticoagulants that are critical for many surgical and biomedical procedures used in modern medicine. In contrast to natural heparin derived from porcine gut mucosa, synthetic heparins are homogenous by mass, polymer length, and chemistry.
    Materials & methods: Stable cell lines expressing the human and mouse Stabilin receptors were used to evaluate endocytosis of natural and synthetic heparin. We chemoenzymatically produced synthetic heparin consisting of 12 sugars (dodecamers) containing 14 sulfate groups resulting in a non-3-O sulfated structure (n12mer). Half of the n12mer was modified with a 3-O sulfate on a single GlcNS sugar producing the 3-O sulfated heparin (12mer). Wildtype (WT), Stabilin-1 knock-out (KO), and Stabilin-2 KO C57BL/6 mice were developed and used for metabolic studies and provided as a source for primary liver sinusoidal endothelial cells.
    Results & conclusions: Human and mouse Stabilin-2 receptors had very similar endocytosis rates of both the 12mer and n12mer, suggesting that they are functionally similar in primary cells. Subcutaneous injections of the n12mer and 12mer revealed that the 12mer had a much longer half-life in circulation and a higher accumulation in liver. The n12mer never accumulated in circulation and was readily excreted by the kidneys before liver accumulation could occur. Liver sinusoidal endothelial cells from the Stabilin-2 KO mice had lower uptake rates for both dodecamers, whereas, the Stabilin-1 KO mice had lower endocytosis rates for the 12mer than the n12mer. 3-O sulfation of heparin is correlated to both a longer circulatory half-life and hepatotropism which is largely performed by the Stabilin receptors.
    MeSH term(s) Animals ; Half-Life ; Heparin/pharmacology ; Heparin/therapeutic use ; Humans ; Mice
    Chemical Substances Heparin (9005-49-6)
    Language English
    Publishing date 2018-05-17
    Publishing country United States
    Document type Journal Article
    ZDB-ID 121852-9
    ISSN 1879-2472 ; 0049-3848
    ISSN (online) 1879-2472
    ISSN 0049-3848
    DOI 10.1016/j.thromres.2018.05.018
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Purification of hepatocytes and sinusoidal endothelial cells from mouse liver perfusion

    Cabral, Fatima / Miller, Colton M / Kudrna, Katrina M / Hass, Blake E / Daubendiek, Jocelyn G / Kellar, Brianna M / Harris, Edward N

    Journal of visualized experiments. 2018 Feb. 12, , no. 132

    2018  

    Abstract: This protocol demonstrates a method for obtaining high yield and viability for mouse hepatocytes and sinusoidal endothelial cells (SECs) suitable for culturing or for obtaining cell lysates. In this protocol, the portal vein is used as the site for ... ...

    Abstract This protocol demonstrates a method for obtaining high yield and viability for mouse hepatocytes and sinusoidal endothelial cells (SECs) suitable for culturing or for obtaining cell lysates. In this protocol, the portal vein is used as the site for catheterization, rather than the vena cava, as this limits contamination of other possible cell types in the final liver preparation. No special instrumentation is required throughout the procedure. A water bath is used as a source of heat to maintain the temperature of all the buffers and solutions. A standard peristaltic pump is used to drive the fluid, and a refrigerated table-top centrifuge is required for the centrifugation procedures. The only limitation of this technique is the placement of the catheter within the portal vein, which is challenging on some of the mice in the 18 - 25 g size range. An advantage of this technique is that only one vein is utilized for the perfusion and the access to the vein is quick, which minimizes ischemia and reperfusion of the liver that reduces hepatic cell viability. Another advantage to this protocol is that it is easy to distinguish live from dead hepatocytes by eyesight due to the difference in cellular density during the centrifugation steps. Cells from this protocol may be used in cell culture for any downstream application as well as processed for any biochemical assessment.
    Keywords buffers ; catheters ; cell culture ; cell viability ; centrifugation ; endothelial cells ; heat ; hepatocytes ; instrumentation ; ischemia ; liver ; mice ; portal vein ; refrigeration ; temperature ; vena cava
    Language English
    Dates of publication 2018-0212
    Size p. e56993.
    Publishing place Journal of Visualized Experiments
    Document type Article
    ZDB-ID 2259946-0
    ISSN 1940-087X
    ISSN 1940-087X
    DOI 10.3791/56993
    Database NAL-Catalogue (AGRICOLA)

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  6. Article ; Online: Mouse genome-wide association studies and systems genetics uncover the genetic architecture associated with hepatic pharmacokinetic and pharmacodynamic properties of a constrained ethyl antisense oligonucleotide targeting Malat1.

    Pirie, Elaine / Ray, Shayoni / Pan, Calvin / Fu, Wuxia / Powers, Andrew F / Polikoff, Danielle / Miller, Colton M / Kudrna, Katrina M / Harris, Edward N / Lusis, Aldons J / Crooke, Rosanne M / Lee, Richard G

    PLoS genetics

    2018  Volume 14, Issue 10, Page(s) e1007732

    Abstract: Antisense oligonucleotides (ASOs) have demonstrated variation of efficacy in patient populations. This has prompted our investigation into the contribution of genetic architecture to ASO pharmacokinetics (PK) and pharmacodynamics (PD). Genome wide ... ...

    Abstract Antisense oligonucleotides (ASOs) have demonstrated variation of efficacy in patient populations. This has prompted our investigation into the contribution of genetic architecture to ASO pharmacokinetics (PK) and pharmacodynamics (PD). Genome wide association (GWA) and transcriptomic analysis in a hybrid mouse diversity panel (HMDP) were used to identify and validate novel genes involved in the uptake and efficacy of a single dose of a Malat1 constrained ethyl (cEt) modified ASO. The GWA of the HMDP identified two significant associations on chromosomes 4 and 10 with hepatic Malat1 ASO concentrations. Stabilin 2 (Stab2) and vesicle associated membrane protein 3 (Vamp3) were identified by cis-eQTL analysis. HMDP strains with lower Stab2 expression and Stab2 KO mice displayed significantly lower PK than strains with higher Stab2 expression and the wild type (WT) animals respectively, confirming the role of Stab2 in regulating hepatic Malat1 ASO uptake. GWA examining ASO efficacy uncovered three loci associated with Malat1 potency: Small Subunit Processome Component (Utp11l) on chromosome 4, Rho associated coiled-coil containing protein kinase 2 (Rock2) and Aci-reductone dioxygenase (Adi1) on chromosome 12. Our results demonstrate the utility of mouse GWAS using the HMDP in detecting genes capable of impacting the uptake of ASOs, and identifies genes critical for the activity of ASOs in vivo.
    MeSH term(s) Animals ; Cell Adhesion Molecules, Neuronal/genetics ; Cell Adhesion Molecules, Neuronal/metabolism ; Gene Expression Profiling/methods ; Genetic Variation ; Genome-Wide Association Study ; Liver/metabolism ; Mice ; Mice, Knockout ; Oligonucleotides, Antisense/genetics ; Oligonucleotides, Antisense/pharmacokinetics ; RNA, Long Noncoding/genetics ; RNA, Long Noncoding/physiology ; RNA, Messenger/metabolism ; Vesicle-Associated Membrane Protein 3/genetics ; Vesicle-Associated Membrane Protein 3/metabolism
    Chemical Substances Cell Adhesion Molecules, Neuronal ; Malat1 long non-coding RNA, mouse ; Oligonucleotides, Antisense ; RNA, Long Noncoding ; RNA, Messenger ; Stab2 protein, mouse ; Vesicle-Associated Membrane Protein 3 ; vesicle-associated membrane protein 3, mouse
    Language English
    Publishing date 2018-10-29
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 2186725-2
    ISSN 1553-7404 ; 1553-7390
    ISSN (online) 1553-7404
    ISSN 1553-7390
    DOI 10.1371/journal.pgen.1007732
    Database MEDical Literature Analysis and Retrieval System OnLINE

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