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Article ; Online: OMIP-009: Characterization of antigen-specific human T-cells.

Lamoreaux, Laurie / Koup, Richard A / Roederer, Mario

Cytometry. Part A : the journal of the International Society for Analytical Cytology

2012 Volume 81, Issue 5, Page(s) 362–363

MeSH term(s)	Antigens/immunology ; CD4-Positive T-Lymphocytes/cytology ; CD4-Positive T-Lymphocytes/immunology ; CD8-Positive T-Lymphocytes/cytology ; CD8-Positive T-Lymphocytes/immunology ; Cytokines/immunology ; Epitopes, T-Lymphocyte/immunology ; Flow Cytometry/methods ; Humans ; Vaccines/immunology
Chemical Substances	Antigens ; Cytokines ; Epitopes, T-Lymphocyte ; Vaccines
Language	English
Publishing date	2012-05
Publishing country	United States
Document type	Journal Article ; Research Support, N.I.H., Intramural ; Research Support, Non-U.S. Gov't
ZDB-ID	2099868-5
ISSN	1552-4930 ; 0196-4763 ; 1552-4922
ISSN (online)	1552-4930
ISSN	0196-4763 ; 1552-4922
DOI	10.1002/cyto.a.22042
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Article: The effect of wrist deviation on grip and pinch strength.

Lamoreaux, L / Hoffer, M M

Clinical orthopaedics and related research

1995 , Issue 314, Page(s) 152–155

Abstract: The effect of wrist deviation on grip and pinch strength was evaluated in 12 normal right-handed adults. Wrist positions of neutral, maximal ulnar (average, 41 degrees), and maximal radial deviation (average, 26 degrees) were held in short-arm casts ... ...

Abstract	The effect of wrist deviation on grip and pinch strength was evaluated in 12 normal right-handed adults. Wrist positions of neutral, maximal ulnar (average, 41 degrees), and maximal radial deviation (average, 26 degrees) were held in short-arm casts while grip and key and tip pinch were measured. Wrist position was neutral with respect to flexion and extension. A highly significant effect of wrist deviation on grip strength was found (p < 0.0001). The effect on pinch strength was not statistically significant. Wrist deviation deformities arise in several clinical situations, such as radial clubhand and malunions of the distal radius. A loss of grip strength was found in radial deviation in this study. This would support 1 of the premises for surgical correction of such deviation by centralization or osteotomy.
MeSH term(s)	Adult ; Biomechanical Phenomena ; Hand Strength/physiology ; Humans ; Middle Aged ; Posture/physiology ; Reference Values ; Statistics as Topic ; Wrist/physiology
Language	English
Publishing date	1995-05
Publishing country	United States
Document type	Journal Article
ZDB-ID	80301-7
ISSN	1528-1132 ; 0009-921X
ISSN (online)	1528-1132
ISSN	0009-921X
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Article ; Online: Intracellular cytokine optimization and standard operating procedure.

Lamoreaux, Laurie / Roederer, Mario / Koup, Richard

Nature protocols

2006 Volume 1, Issue 3, Page(s) 1507–1516

Abstract: We describe here a method for optimizing the use of polychromatic flow cytometry (with up to 17 fluorochromes simultaneously) in surface and intracellular staining of human T lymphocytes. We will highlight and discuss how to procedurally optimize key ... ...

Abstract	We describe here a method for optimizing the use of polychromatic flow cytometry (with up to 17 fluorochromes simultaneously) in surface and intracellular staining of human T lymphocytes. We will highlight and discuss how to procedurally optimize key steps in the experimental process before an intracellular cytokine staining assay protocol is finalized. These include but are not limited to the titration of monoclonal antibodies, use of a dead-cell discriminator and 'dump' channel, selection of a cytokine secretion inhibitor, selection of fixation and permeabilization reagents, and inclusion of compensation controls. Building on this basic protocol, we then establish a polychromatic assay designed to detect five separate functions of T lymphocytes (production of three cytokines and one chemokine, and degranulation) while simultaneously identifying multiple surface markers on the responding cells.
MeSH term(s)	Antigens, Surface/analysis ; Cytokines/analysis ; Flow Cytometry/methods ; Fluorescent Dyes ; Humans ; Immunologic Techniques ; T-Lymphocytes/chemistry ; T-Lymphocytes/cytology
Chemical Substances	Antigens, Surface ; Cytokines ; Fluorescent Dyes
Language	English
Publishing date	2006
Publishing country	England
Document type	Journal Article
ZDB-ID	2244966-8
ISSN	1750-2799 ; 1754-2189
ISSN (online)	1750-2799
ISSN	1754-2189
DOI	10.1038/nprot.2006.268
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Article ; Online: Efficacy and safety of pregabalin 600 mg/d for treating painful diabetic peripheral neuropathy: a double-blind placebo-controlled trial.

Arezzo, Joseph C / Rosenstock, Julio / Lamoreaux, Linda / Pauer, Lynne

BMC neurology

2008 Volume 8, Page(s) 33

Abstract: Background: Recent consensus guidelines recommend pregabalin as a first-tier treatment for painful diabetic peripheral neuropathy (DPN). We evaluated the efficacy of pregabalin 600 mg/d (300 mg dosed BID) versus placebo for relieving DPN-associated ... ...

Abstract	Background: Recent consensus guidelines recommend pregabalin as a first-tier treatment for painful diabetic peripheral neuropathy (DPN). We evaluated the efficacy of pregabalin 600 mg/d (300 mg dosed BID) versus placebo for relieving DPN-associated neuropathic pain, and assessed its safety using objective measures of nerve conduction (NC). Methods: In this randomized, double-blind, placebo-controlled trial, the primary efficacy measure was endpoint mean pain score (MPS) from daily pain diaries (11-point scale). NC velocity and sensory and motor amplitudes were assessed at baseline, endpoint, and end of follow-up (2 weeks post-treatment). At each timepoint, the median-motor, median-sensory, ulnar-sensory, and peroneal-motor nerves were evaluated. Secondary efficacy measures included weekly MPS and proportion of responders (patients achieving >or=50% reduction in MPS from baseline to endpoint). After 1-weeks' dosage escalation, pregabalin-treated patients received 300 mg BID for 12 weeks. Results: Eighty-two patients received pregabalin and 85 placebo. Mean durations were 10 years for diabetes and approximately 5 years for painful DPN. Pregabalin-treated patients had lower MPS than controls (mean difference, -1.28; p <.001). For all four nerves, 95% CIs for median differences in amplitude and velocity from baseline to endpoint and baseline to follow-up included 0 (ie, no significant difference vs. placebo). Significant pain improvement among pregabalin-treated patients was evident at week 1 and sustained at every weekly timepoint. More pregabalin-treated patients (49%) than controls (23%) were responders (p <.001). Conclusion: Pregabalin 600 mg/d (300 mg BID) effectively reduced pain, was well tolerated, and had no statistically significant or clinically meaningful effect on NC in patients with painful DPN.
MeSH term(s)	Adult ; Aged ; Aged, 80 and over ; Analgesics/administration & dosage ; Analgesics/adverse effects ; Analgesics/therapeutic use ; Diabetic Neuropathies/drug therapy ; Diabetic Neuropathies/physiopathology ; Double-Blind Method ; Drug Administration Schedule ; Female ; Follow-Up Studies ; Humans ; Male ; Median Nerve/drug effects ; Median Nerve/physiopathology ; Middle Aged ; Neural Conduction/drug effects ; Pain/drug therapy ; Pain/physiopathology ; Pain Measurement/methods ; Peroneal Nerve/drug effects ; Peroneal Nerve/physiopathology ; Placebos ; Pregabalin ; Treatment Outcome ; Ulnar Nerve/drug effects ; Ulnar Nerve/physiopathology ; gamma-Aminobutyric Acid/administration & dosage ; gamma-Aminobutyric Acid/adverse effects ; gamma-Aminobutyric Acid/analogs & derivatives ; gamma-Aminobutyric Acid/therapeutic use
Chemical Substances	Analgesics ; Placebos ; Pregabalin (55JG375S6M) ; gamma-Aminobutyric Acid (56-12-2)
Language	English
Publishing date	2008-09-16
Publishing country	England
Document type	Journal Article ; Multicenter Study ; Randomized Controlled Trial ; Research Support, Non-U.S. Gov't
ISSN	1471-2377
ISSN (online)	1471-2377
DOI	10.1186/1471-2377-8-33
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Article ; Online: Heavy metal contaminants can eliminate quantum dot fluorescence.

Zarkowsky, David / Lamoreaux, Laurie / Chattopadhyay, Pratip / Koup, Richard A / Perfetto, Stephen P / Roederer, Mario

Cytometry. Part A : the journal of the International Society for Analytical Cytology

2010 Volume 79, Issue 1, Page(s) 84–89

Abstract: Quantum dots (QD) are fluorescent nanocrystals that are highly useful in imaging and flow cytometric analyses. During routine use of monoclonal antibody conjugates of QD, we have occasionally seen partial or total loss of fluorescence when using certain ... ...

Abstract	Quantum dots (QD) are fluorescent nanocrystals that are highly useful in imaging and flow cytometric analyses. During routine use of monoclonal antibody conjugates of QD, we have occasionally seen partial or total loss of fluorescence when using certain lots of fixative solutions. We hypothesized that a low level contamination with heavy metal cations was responsible, since low level metal contaminants are not uncommon in formalin solutions. By titrating known concentrations of heavy metal cations into staining solutions, we found that millimolar concentrations of ferrous and zinc ions, and as low as 50 nanomolar cupric ions, completely eliminated QD fluorescence. By mass spectroscopic quantification of metals in commercial fixative solutions previously shown to perform poorly or well with regard to QD fluorescence, we confirmed that the presence of copper in solution was correlated with poor performance. Notably, prior addition of EDTA to chelate the divalent cations in these solutions prevented the inhibition of QD fluorescence. Finally, the copper-induced loss of QD fluorescence is irreversible: cells labeled with QD are highly fluorescent and can be rendered nonfluorescent by the addition of cupric sulfate, even after washing extensively. Indeed, these cells can then be successfully stained with other QD reagents, providing a method for immunofluorescence restaining of cells without contaminating fluorescence from the first stain.
MeSH term(s)	Copper/analysis ; Fixatives/chemistry ; Flow Cytometry/methods ; Fluorescence ; Formaldehyde ; Humans ; Indicators and Reagents ; Ions ; Iron/analysis ; Leukocytes, Mononuclear/chemistry ; Quantum Dots ; Zinc/analysis
Chemical Substances	Fixatives ; Indicators and Reagents ; Ions ; Formaldehyde (1HG84L3525) ; Copper (789U1901C5) ; Iron (E1UOL152H7) ; Zinc (J41CSQ7QDS)
Language	English
Publishing date	2010-11-11
Publishing country	United States
Document type	Journal Article ; Research Support, N.I.H., Intramural
ZDB-ID	2099868-5
ISSN	1552-4930 ; 0196-4763 ; 1552-4922
ISSN (online)	1552-4930
ISSN	0196-4763 ; 1552-4922
DOI	10.1002/cyto.a.20986
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Article: Central quadriceps tendon for anterior cruciate ligament reconstruction. Part I: Morphometric and biomechanical evaluation.

Harris, N L / Smith, D A / Lamoreaux, L / Purnell, M

The American journal of sports medicine

1997 Volume 25, Issue 1, Page(s) 23–28

Abstract: We examined the anatomic and biomechanical adequacy of the central quadriceps tendon as an alternative graft source for anterior cruciate ligament reconstruction. Morphometry was performed on 15 preserved and 6 fresh-frozen specimens. Biomechanical ... ...

Abstract	We examined the anatomic and biomechanical adequacy of the central quadriceps tendon as an alternative graft source for anterior cruciate ligament reconstruction. Morphometry was performed on 15 preserved and 6 fresh-frozen specimens. Biomechanical testing was performed on the six fresh-frozen specimens. We initially used a triple suture through the tendon construction, and then clamping directly on the tendon. Morphometry yielded the following measurements: length, 6.1 +/- 1.0 cm; width, 2.7 cm (range, 2.1 to 3.7); and thickness, 7 mm (range, 6.4 to 7.8). The thickness was 1.8 times that of the patellar tendon. Biomechanical testing showed that suture failure occurred at 692 +/- 181 N, and tendon failure occurred at 1075 +/- 449 N. The load to tendon failure was 1.36 times that of a comparable-width patellar tendon graft, although the difference was not statistically significant. The failure mode was primarily through partial or complete tendinous avulsion, with only one specimen failing at midsubstance. These findings show the central quadriceps graft is of sufficient size and strength to be used for anterior cruciate ligament reconstruction.
MeSH term(s)	Aged ; Aged, 80 and over ; Anterior Cruciate Ligament/surgery ; Anterior Cruciate Ligament Injuries ; Biomechanical Phenomena ; Cadaver ; Female ; Humans ; Knee Injuries/physiopathology ; Knee Injuries/surgery ; Male ; Middle Aged ; Rupture ; Tendons/transplantation ; Thigh
Language	English
Publishing date	1997-01
Publishing country	United States
Document type	Journal Article
ZDB-ID	197482-8
ISSN	1552-3365 ; 0363-5465
ISSN (online)	1552-3365
ISSN	0363-5465
DOI	10.1177/036354659702500105
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Article: Effect of gabapentin (Neurontin) [corrected] on mood and well-being in patients with epilepsy.

Dimond, K R / Pande, A C / Lamoreaux, L / Pierce, M W

Progress in neuro-psychopharmacology & biological psychiatry

1996 Volume 20, Issue 3, Page(s) 407–417

Abstract: 1. Global improvement data from five double-blind clinical trials of gabapentin as add-on therapy in patients with epilepsy were reviewed to assess the effects of gabapentin on mood. 2. One hundred and ninety-four (46%) of 423 gabapentin-treated patients ...

Abstract	1. Global improvement data from five double-blind clinical trials of gabapentin as add-on therapy in patients with epilepsy were reviewed to assess the effects of gabapentin on mood. 2. One hundred and ninety-four (46%) of 423 gabapentin-treated patients reported improvements in general well-being as compared with 79 (29%) of the 271 placebo-treated patients. 3. Findings support anecdotal reports of improved affective status among patients taking gabapentin and suggest that the study of gabapentin in psychiatric populations may be warranted.
MeSH term(s)	Acetates/therapeutic use ; Adult ; Affect/drug effects ; Amines ; Anticonvulsants/therapeutic use ; Cyclohexanecarboxylic Acids ; Epilepsy/drug therapy ; Female ; Gabapentin ; Humans ; Male ; Quality of Life ; gamma-Aminobutyric Acid
Chemical Substances	Acetates ; Amines ; Anticonvulsants ; Cyclohexanecarboxylic Acids ; gamma-Aminobutyric Acid (56-12-2) ; Gabapentin (6CW7F3G59X)
Language	English
Publishing date	1996-04
Publishing country	England
Document type	Clinical Trial ; Journal Article ; Randomized Controlled Trial
ZDB-ID	781181-0
ISSN	1878-4216 ; 0278-5846
ISSN (online)	1878-4216
ISSN	0278-5846
DOI	10.1016/0278-5846(96)00005-x
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Article ; Online: Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments.

McDavid, Andrew / Finak, Greg / Chattopadyay, Pratip K / Dominguez, Maria / Lamoreaux, Laurie / Ma, Steven S / Roederer, Mario / Gottardo, Raphael

Bioinformatics (Oxford, England)

2012 Volume 29, Issue 4, Page(s) 461–467

Abstract: Motivation: Cell populations are never truly homogeneous; individual cells exist in biochemical states that define functional differences between them. New technology based on microfluidic arrays combined with multiplexed quantitative polymerase chain ... ...

Abstract	Motivation: Cell populations are never truly homogeneous; individual cells exist in biochemical states that define functional differences between them. New technology based on microfluidic arrays combined with multiplexed quantitative polymerase chain reactions now enables high-throughput single-cell gene expression measurement, allowing assessment of cellular heterogeneity. However, few analytic tools have been developed specifically for the statistical and analytical challenges of single-cell quantitative polymerase chain reactions data. Results: We present a statistical framework for the exploration, quality control and analysis of single-cell gene expression data from microfluidic arrays. We assess accuracy and within-sample heterogeneity of single-cell expression and develop quality control criteria to filter unreliable cell measurements. We propose a statistical model accounting for the fact that genes at the single-cell level can be on (and a continuous expression measure is recorded) or dichotomously off (and the recorded expression is zero). Based on this model, we derive a combined likelihood ratio test for differential expression that incorporates both the discrete and continuous components. Using an experiment that examines treatment-specific changes in expression, we show that this combined test is more powerful than either the continuous or dichotomous component in isolation, or a t-test on the zero-inflated data. Although developed for measurements from a specific platform (Fluidigm), these tools are generalizable to other multi-parametric measures over large numbers of events. Availability: All results presented here were obtained using the SingleCellAssay R package available on GitHub (http://github.com/RGLab/SingleCellAssay).
MeSH term(s)	Gene Expression Profiling/methods ; Gene Expression Profiling/standards ; Humans ; Microfluidic Analytical Techniques ; Models, Statistical ; Quality Control ; Reverse Transcriptase Polymerase Chain Reaction/methods ; Single-Cell Analysis
Language	English
Publishing date	2012-12-24
Publishing country	England
Document type	Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
ZDB-ID	1422668-6
ISSN	1367-4811 ; 1367-4803
ISSN (online)	1367-4811
ISSN	1367-4803
DOI	10.1093/bioinformatics/bts714
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Article ; Online: Amine-reactive dyes for dead cell discrimination in fixed samples.

Perfetto, Stephen P / Chattopadhyay, Pratip K / Lamoreaux, Laurie / Nguyen, Richard / Ambrozak, David / Koup, Richard A / Roederer, Mario

Current protocols in cytometry

2010 Volume Chapter 9, Page(s) Unit 9.34

Abstract: Amine-reactive dyes, also known as LIVE/DEAD fixable dead cell stains, are a class of viability dyes suitable for identifying dead cells in samples that will be fixed. These dyes cross the cell membranes of dead cells, and react with free amines in the ... ...

Abstract	Amine-reactive dyes, also known as LIVE/DEAD fixable dead cell stains, are a class of viability dyes suitable for identifying dead cells in samples that will be fixed. These dyes cross the cell membranes of dead cells, and react with free amines in the cytoplasm. Live cells exclude these dyes because their cell membranes are intact, and free dye is washed away after staining. Notably, the reaction is irreversible; therefore, when cells are fixed and permeabilized (as with intracellular staining procedures), the bound dye remains associated with the dead cells (unlike other viability dyes). Since amine-reactive dyes are fluorescent when excited by lasers, dead cells can be identified by flow cytometry. This unit describes procedures, troubleshooting, and outcomes for using the two most commonly used amine-reactive dyes, ViViD and Aqua Blue.
MeSH term(s)	Amines/chemistry ; Amines/metabolism ; Animals ; Cell Death ; Coloring Agents/chemistry ; Coloring Agents/metabolism ; Flow Cytometry/methods ; Humans ; Microspheres ; Staining and Labeling ; T-Lymphocytes/cytology ; Tissue Fixation/methods ; Titrimetry
Chemical Substances	Amines ; Coloring Agents
Language	English
Publishing date	2010-06-25
Publishing country	United States
Document type	Journal Article ; Research Support, N.I.H., Extramural ; Research Support, N.I.H., Intramural
ZDB-ID	2179050-4
ISSN	1934-9300 ; 1934-9297
ISSN (online)	1934-9300
ISSN	1934-9297
DOI	10.1002/0471142956.cy0934s53
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Article ; Online: Highly multiplexed quantitation of gene expression on single cells.

Dominguez, Maria H / Chattopadhyay, Pratip K / Ma, Steven / Lamoreaux, Laurie / McDavid, Andrew / Finak, Greg / Gottardo, Raphael / Koup, Richard A / Roederer, Mario

Journal of immunological methods

2013 Volume 391, Issue 1-2, Page(s) 133–145

Abstract: Highly multiplexed, single-cell technologies reveal important heterogeneity within cell populations. Recently, technologies to simultaneously measure expression of 96 (or more) genes from a single cell have been developed for immunologic monitoring. Here, ...

Abstract	Highly multiplexed, single-cell technologies reveal important heterogeneity within cell populations. Recently, technologies to simultaneously measure expression of 96 (or more) genes from a single cell have been developed for immunologic monitoring. Here, we report a rigorous, optimized, quantitative methodology for using this technology. Specifically: we describe a unique primer/probe qualification method necessary for quantitative results; we show that primers do not compete in highly multiplexed amplifications; we define the limit of detection for this assay as a single mRNA transcript; and, we show that the technical reproducibility of the system is very high. We illustrate two disparate applications of the platform: a "bulk" approach that measures expression patterns from 100 cells at a time in high throughput to define gene signatures, and a single-cell approach to define the coordinate expression patterns of multiple genes and reveal unique subsets of cells.
MeSH term(s)	Animals ; DNA Primers ; Gene Expression Profiling/methods ; Gene Expression Regulation ; Genetic Markers ; High-Throughput Screening Assays/methods ; Humans ; Limit of Detection ; Linear Models ; Lymphocyte Activation/genetics ; Lymphocyte Subsets/immunology ; Macaca mulatta ; Multiplex Polymerase Chain Reaction ; RNA, Messenger/metabolism ; Reproducibility of Results ; Reverse Transcriptase Polymerase Chain Reaction ; T-Lymphocytes/immunology
Chemical Substances	DNA Primers ; Genetic Markers ; RNA, Messenger
Language	English
Publishing date	2013-03-13
Publishing country	Netherlands
Document type	Journal Article ; Research Support, N.I.H., Intramural ; Research Support, Non-U.S. Gov't
ZDB-ID	120142-6
ISSN	1872-7905 ; 0022-1759
ISSN (online)	1872-7905
ISSN	0022-1759
DOI	10.1016/j.jim.2013.03.002
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