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  1. Article ; Online: The kinase OsSK41/OsGSK5 negatively regulates amylose content in rice endosperm by affecting the interaction between OsEBP89 and OsBP5

    Hu, Zejun / Niu, Fuan / Yan, Peiwen / Wang, Kai / Zhang, Lixia / Yan, Ying / Zhu, Yu / Dong, Shiqing / Ma, Fuying / Lan, Dengyong / Liu, Siwen / Xin, Xiaoyun / Wang, Ying / Yang, Jinshui / Cao, Liming / Wu, Shujun / Luo, Xiaojin

    Journal of Integrative Plant Biology. 2023 July, v. 65, no. 7 p.1782-1793

    2023  

    Abstract: Amylose content (AC) is the main factor determining the palatability, viscosity, transparency, and digestibility of rice (Oryza sativa) grains. AC in rice grains is mainly controlled by different alleles of the Waxy (Wx) gene. The AP2/EREBP transcription ...

    Abstract Amylose content (AC) is the main factor determining the palatability, viscosity, transparency, and digestibility of rice (Oryza sativa) grains. AC in rice grains is mainly controlled by different alleles of the Waxy (Wx) gene. The AP2/EREBP transcription factor OsEBP89 interacts with the MYC‐like protein OsBP5 to synergistically regulate the expression of Wx. Here, we determined that the GLYCOGEN SYNTHASE KINASE 5 (OsGSK5, also named SHAGGY‐like kinase 41 [OsSK41]) inhibits the transcriptional activation activity of OsEBP89 in rice grains during amylose biosynthesis. The loss of OsSK41 function enhanced Wx expression and increased AC in rice grains. By contrast, the loss of function of OsEBP89 reduced Wx expression and decreased AC in rice grains. OsSK41 interacts with OsEBP89 and phosphorylates four of its sites (Thr‐28, Thr‐30, Ser‐238, and Thr‐257), which makes OsEBP89 unstable and attenuates its interaction with OsBP5. Wx promoter activity was relatively weak when regulated by the phosphomimic variant OsEBP89ᴱ–OsBP5 but relatively strong when regulated by the nonphosphorylatable variant OsEBP89ᴬ–OsBP5. Therefore, OsSK41‐mediated phosphorylation of OsEBP89 represents an additional layer of complexity in the regulation of amylose biosynthesis during rice grain development. In addition, our findings provide four possible sites for regulating rice grain AC via precise gene editing.
    Keywords Oryza sativa ; amylose ; biosynthesis ; digestibility ; endosperm ; genes ; glycogen synthase kinases ; palatability ; phosphorylation ; rice ; seed development ; transcription factors ; transcriptional activation ; viscosity
    Language English
    Dates of publication 2023-07
    Size p. 1782-1793.
    Publishing place John Wiley & Sons, Ltd
    Document type Article ; Online
    Note JOURNAL ARTICLE
    ZDB-ID 2130095-1
    ISSN 1744-7909 ; 1672-9072
    ISSN (online) 1744-7909
    ISSN 1672-9072
    DOI 10.1111/jipb.13488
    Database NAL-Catalogue (AGRICOLA)

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  2. Article: The identification and characterization of a plant height and grain length related gene

    Lan, Dengyong / Cao, Liming / Liu, Mingyu / Ma, Fuying / Yan, Peiwen / Zhang, Xinwei / Hu, Jian / Niu, Fuan / He, Shicong / Cui, Jinhao / Yuan, Xinyu / Yang, Jinshui / Wang, Ying / Luo, Xiaojin

    Frontiers in plant science

    2023  Volume 14, Page(s) 1152196

    Abstract: Plant height and grain size are important agronomic traits affecting rice yield. Various plant hormones participate in the regulation of plant height and grain size in rice. However, how these hormones cooperate to regulate plant height and grain size is ...

    Abstract Plant height and grain size are important agronomic traits affecting rice yield. Various plant hormones participate in the regulation of plant height and grain size in rice. However, how these hormones cooperate to regulate plant height and grain size is poorly understood. In this study, we identified a brassinosteroid-related gene,
    Language English
    Publishing date 2023-03-24
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2613694-6
    ISSN 1664-462X
    ISSN 1664-462X
    DOI 10.3389/fpls.2023.1152196
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: The kinase OsSK41/OsGSK5 negatively regulates amylose content in rice endosperm by affecting the interaction between OsEBP89 and OsBP5.

    Hu, Zejun / Niu, Fuan / Yan, Peiwen / Wang, Kai / Zhang, Lixia / Yan, Ying / Zhu, Yu / Dong, Shiqing / Ma, Fuying / Lan, Dengyong / Liu, Siwen / Xin, Xiaoyun / Wang, Ying / Yang, Jinshui / Cao, Liming / Wu, Shujun / Luo, Xiaojin

    Journal of integrative plant biology

    2023  Volume 65, Issue 7, Page(s) 1782–1793

    Abstract: Amylose content (AC) is the main factor determining the palatability, viscosity, transparency, and digestibility of rice (Oryza sativa) grains. AC in rice grains is mainly controlled by different alleles of the Waxy (Wx) gene. The AP2/EREBP transcription ...

    Abstract Amylose content (AC) is the main factor determining the palatability, viscosity, transparency, and digestibility of rice (Oryza sativa) grains. AC in rice grains is mainly controlled by different alleles of the Waxy (Wx) gene. The AP2/EREBP transcription factor OsEBP89 interacts with the MYC-like protein OsBP5 to synergistically regulate the expression of Wx. Here, we determined that the GLYCOGEN SYNTHASE KINASE 5 (OsGSK5, also named SHAGGY-like kinase 41 [OsSK41]) inhibits the transcriptional activation activity of OsEBP89 in rice grains during amylose biosynthesis. The loss of OsSK41 function enhanced Wx expression and increased AC in rice grains. By contrast, the loss of function of OsEBP89 reduced Wx expression and decreased AC in rice grains. OsSK41 interacts with OsEBP89 and phosphorylates four of its sites (Thr-28, Thr-30, Ser-238, and Thr-257), which makes OsEBP89 unstable and attenuates its interaction with OsBP5. Wx promoter activity was relatively weak when regulated by the phosphomimic variant OsEBP89
    MeSH term(s) Endosperm/metabolism ; Amylose/metabolism ; Oryza/metabolism ; Promoter Regions, Genetic ; Edible Grain/genetics ; Plant Proteins/genetics ; Plant Proteins/metabolism
    Chemical Substances Amylose (9005-82-7) ; Plant Proteins
    Language English
    Publishing date 2023-04-21
    Publishing country China (Republic : 1949- )
    Document type Journal Article
    ZDB-ID 2130095-1
    ISSN 1744-7909 ; 1672-9072
    ISSN (online) 1744-7909
    ISSN 1672-9072
    DOI 10.1111/jipb.13488
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: A New RING Finger Protein,

    Yan, Peiwen / Zhu, Yu / Wang, Ying / Ma, Fuying / Lan, Dengyong / Niu, Fuan / Dong, Shiqing / Zhang, Xinwei / Hu, Jian / Liu, Siwen / Guo, Tao / Xin, Xiaoyun / Zhang, Shiyong / Yang, Jinshui / Cao, Liming / Luo, Xiaojin

    International journal of molecular sciences

    2022  Volume 23, Issue 2

    Abstract: Developing methods for increasing the biomass and improving the plant architecture is important for crop improvement. We herein describe a gene belonging to the RING_Ubox (RING (Really Interesting New Gene) finger domain and U-box domain) superfamily, ...

    Abstract Developing methods for increasing the biomass and improving the plant architecture is important for crop improvement. We herein describe a gene belonging to the RING_Ubox (RING (Really Interesting New Gene) finger domain and U-box domain) superfamily,
    MeSH term(s) Edible Grain/genetics ; Edible Grain/growth & development ; Fluorescent Antibody Technique ; Gene Expression Regulation, Plant ; Gene Knockout Techniques ; Oryza/anatomy & histology ; Oryza/cytology ; Oryza/physiology ; Plant Development ; Plant Proteins/chemistry ; Plant Proteins/genetics ; Plant Structures ; Plants, Genetically Modified ; Quantitative Trait, Heritable ; Zinc Fingers/genetics
    Chemical Substances Plant Proteins
    Language English
    Publishing date 2022-01-13
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms23020824
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Auxin signaling module OsSK41‐OsIAA10‐OsARF regulates grain yield traits in rice

    Ma, Fuying / Zhang, Fan / Zhu, Yu / Lan, Dengyong / Yan, Peiwen / Wang, Ying / Hu, Zejun / Zhang, Xinwei / Hu, Jian / Niu, Fuan / Liu, Mingyu / He, Shicong / Cui, Jinhao / Yuan, Xinyu / Yan, Ying / Wu, Shujun / Cao, Liming / Bian, Hongwu / Yang, Jinshui /
    Li, Zhikang / Luo, Xiaojin

    Journal of Integrative Plant Biology. 2023 July, v. 65, no. 7 p.1753-1766

    2023  

    Abstract: Auxin is an important phytohormone in plants, and auxin signaling pathways in rice play key roles in regulating its growth, development, and productivity. To investigate how rice grain yield traits are regulated by auxin signaling pathways and to ... ...

    Abstract Auxin is an important phytohormone in plants, and auxin signaling pathways in rice play key roles in regulating its growth, development, and productivity. To investigate how rice grain yield traits are regulated by auxin signaling pathways and to facilitate their application in rice improvement, we validated the functional relationships among regulatory genes such as OsIAA10, OsSK41, and OsARF21 that are involved in one of the auxin (OsIAA10) signaling pathways. We assessed the phenotypic effects of these genes on several grain yield traits across two environments using knockout and/or overexpression transgenic lines. Based on the results, we constructed a model that showed how grain yield traits were regulated by OsIAA10 and OsTIR1, OsAFB2, and OsSK41 and OsmiR393 in the OsSK41‐OsIAA10‐OsARF module and by OsARF21 in the transcriptional regulation of downstream auxin response genes in the OsSK41‐OsIAA10‐OsARF module. The population genomic analyses revealed rich genetic diversity and the presence of major functional alleles at most of these loci in rice populations. The strong differentiation of many major alleles between Xian/indica and Geng/japonica subspecies and/or among modern varieties and landraces suggested that they contributed to improved productivity during evolution and breeding. We identified several important aspects associated with the genetic and molecular bases of rice grain and yield traits that were regulated by auxin signaling pathways. We also suggested rice auxin response factor (OsARF) activators as candidate target genes for improving specific target traits by overexpression and/or editing subspecies‐specific alleles and by searching and pyramiding the ‘best’ gene allelic combinations at multiple regulatory genes in auxin signaling pathways in rice breeding programs.
    Keywords auxins ; evolution ; genes ; genetic variation ; genetically modified organisms ; genomics ; grain yield ; landraces ; models ; phenotype ; plant hormones ; rice ; transcription (genetics) ; China
    Language English
    Dates of publication 2023-07
    Size p. 1753-1766.
    Publishing place John Wiley & Sons, Ltd
    Document type Article ; Online
    Note JOURNAL ARTICLE
    ZDB-ID 2130095-1
    ISSN 1744-7909 ; 1672-9072
    ISSN (online) 1744-7909
    ISSN 1672-9072
    DOI 10.1111/jipb.13484
    Database NAL-Catalogue (AGRICOLA)

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  6. Article ; Online: RNA-Seq Transcriptome Analysis and Evolution of

    Niu, Fuan / Liu, Mingyu / Dong, Shiqing / Dong, Xianxin / Wang, Ying / Cheng, Can / Chu, Huangwei / Hu, Zejun / Ma, Fuying / Yan, Peiwen / Lan, Dengyong / Zhang, Jianming / Zhou, Jihua / Sun, Bin / Zhang, Anpeng / Hu, Jian / Zhang, Xinwei / He, Shicong / Cui, Jinhao /
    Yuan, Xinyu / Yang, Jinshui / Cao, Liming / Luo, Xiaojin

    International journal of molecular sciences

    2023  Volume 24, Issue 12

    Abstract: Spikelet number per panicle (SNP) is one of the most important yield components in rice. ... ...

    Abstract Spikelet number per panicle (SNP) is one of the most important yield components in rice. Rice
    MeSH term(s) RNA-Seq ; Oryza/genetics ; Phylogeny ; Plant Breeding ; Gene Expression Profiling ; Transcriptome
    Language English
    Publishing date 2023-06-18
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms241210303
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Auxin signaling module OsSK41-OsIAA10-OsARF regulates grain yield traits in rice.

    Ma, Fuying / Zhang, Fan / Zhu, Yu / Lan, Dengyong / Yan, Peiwen / Wang, Ying / Hu, Zejun / Zhang, Xinwei / Hu, Jian / Niu, Fuan / Liu, Mingyu / He, Shicong / Cui, Jinhao / Yuan, Xinyu / Yan, Ying / Wu, Shujun / Cao, Liming / Bian, Hongwu / Yang, Jinshui /
    Li, Zhikang / Luo, Xiaojin

    Journal of integrative plant biology

    2023  Volume 65, Issue 7, Page(s) 1753–1766

    Abstract: Auxin is an important phytohormone in plants, and auxin signaling pathways in rice play key roles in regulating its growth, development, and productivity. To investigate how rice grain yield traits are regulated by auxin signaling pathways and to ... ...

    Abstract Auxin is an important phytohormone in plants, and auxin signaling pathways in rice play key roles in regulating its growth, development, and productivity. To investigate how rice grain yield traits are regulated by auxin signaling pathways and to facilitate their application in rice improvement, we validated the functional relationships among regulatory genes such as OsIAA10, OsSK41, and OsARF21 that are involved in one of the auxin (OsIAA10) signaling pathways. We assessed the phenotypic effects of these genes on several grain yield traits across two environments using knockout and/or overexpression transgenic lines. Based on the results, we constructed a model that showed how grain yield traits were regulated by OsIAA10 and OsTIR1, OsAFB2, and OsSK41 and OsmiR393 in the OsSK41-OsIAA10-OsARF module and by OsARF21 in the transcriptional regulation of downstream auxin response genes in the OsSK41-OsIAA10-OsARF module. The population genomic analyses revealed rich genetic diversity and the presence of major functional alleles at most of these loci in rice populations. The strong differentiation of many major alleles between Xian/indica and Geng/japonica subspecies and/or among modern varieties and landraces suggested that they contributed to improved productivity during evolution and breeding. We identified several important aspects associated with the genetic and molecular bases of rice grain and yield traits that were regulated by auxin signaling pathways. We also suggested rice auxin response factor (OsARF) activators as candidate target genes for improving specific target traits by overexpression and/or editing subspecies-specific alleles and by searching and pyramiding the 'best' gene allelic combinations at multiple regulatory genes in auxin signaling pathways in rice breeding programs.
    MeSH term(s) Oryza/metabolism ; Plant Breeding ; Phenotype ; Indoleacetic Acids/metabolism ; Edible Grain/genetics ; Edible Grain/metabolism
    Chemical Substances Indoleacetic Acids
    Language English
    Publishing date 2023-04-21
    Publishing country China (Republic : 1949- )
    Document type Journal Article
    ZDB-ID 2130095-1
    ISSN 1744-7909 ; 1672-9072
    ISSN (online) 1744-7909
    ISSN 1672-9072
    DOI 10.1111/jipb.13484
    Database MEDical Literature Analysis and Retrieval System OnLINE

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