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  1. Article ; Online: The Diagnosis and Treatment of Osteosarcoma and Ewing's Sarcoma in Children and Adolescents.

    Zarghooni, Kourosh / Bratke, Grischa / Landgraf, Pablo / Simon, Thorsten / Maintz, David / Eysel, Peer

    Deutsches Arzteblatt international

    2023  Volume 120, Issue 24, Page(s) 405–412

    Abstract: Background: Osteosarcoma and Ewing's sarcoma in children and adolescents require age-specific interdisciplinary diagnosis and treatment to achieve optimal therapeutic outcomes.: Methods: The diagnosis and treatment of malignant bone tumors in ... ...

    Abstract Background: Osteosarcoma and Ewing's sarcoma in children and adolescents require age-specific interdisciplinary diagnosis and treatment to achieve optimal therapeutic outcomes.
    Methods: The diagnosis and treatment of malignant bone tumors in childhood and adolescence are presented in the light of publications retrieved by a selective search, pertinent guidelines, and the authors' extensive experience in an interdisciplinary cancer center.
    Results: Bone sarcomas make up approximately 5% of all malignancies in children and adolescents; the most common types are Ewing's sarcoma and osteosarcoma. Patients are often not referred to a specialized center until long after the onset of symptoms, as they and their physicians rarely consider the possibility of a bone tumor, and the symptoms are often trivialized. Bone pain of unknown origin, swelling, and functional limitations should be investigated with conventional x-rays. Lesions of unclear origin should be biopsied after a meticulous clinical and radiologic evaluation. Multimodal treatment consists of neo - adjuvant chemotherapy, limb-preserving resection if possible, and radiotherapy where indicated. In multicenter studies, patients with osteosarcoma achieve event-free survival in 64% of cases if their disease is localized, and 28% if it is metastatic; the corresponding figures for patients with Ewing's sarcoma are 80% and 27%, respectively.
    Conclusion: With implementation of the current treatment recommendations, most children and adolescents with malignant bone tumors can be treated successfully with curative intent. These patients should be referred to a sarcoma center for diagnosis and treatment.
    MeSH term(s) Humans ; Child ; Adolescent ; Sarcoma, Ewing/therapy ; Sarcoma, Ewing/drug therapy ; Osteosarcoma/therapy ; Osteosarcoma/drug therapy ; Bone Neoplasms/therapy ; Bone Neoplasms/drug therapy ; Combined Modality Therapy
    Language English
    Publishing date 2023-04-24
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 2406159-1
    ISSN 1866-0452 ; 1866-0452
    ISSN (online) 1866-0452
    ISSN 1866-0452
    DOI 10.3238/arztebl.m2023.0079
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Conference proceedings: Combining the results of several PAR-CLIP applications to improve the prediction of microRNA-mRNA interactions using a Bayesian hierarchical model

    Hüßler, Eva-Maria / Schaefer, Martin / Landgraf, Pablo / Schwender, Holger

    2022  , Page(s) Abstr. 92

    Event/congress 67. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e. V. (GMDS), 13. Jahreskongress der Technologie- und Methodenplattform für die vernetzte medizinische Forschung e.V. (TMF); sine loco [digital]; Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie; 2022
    Keywords Medizin, Gesundheit ; microRNA ; Bayes ; PAR-CLIP
    Publishing date 2022-08-19
    Publisher German Medical Science GMS Publishing House; Düsseldorf
    Document type Conference proceedings
    DOI 10.3205/22gmds113
    Database German Medical Science

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  3. Article ; Online: UCB transplantation: miRNA involvement.

    Landgraf, Pablo

    Blood

    2009  Volume 113, Issue 26, Page(s) 6505–6506

    Language English
    Publishing date 2009-06-25
    Publishing country United States
    Document type Comment ; Journal Article
    ZDB-ID 80069-7
    ISSN 1528-0020 ; 0006-4971
    ISSN (online) 1528-0020
    ISSN 0006-4971
    DOI 10.1182/blood-2009-04-214163
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Embryonal tumor with multilayered rosettes located in the brainstem: Promising results after multimodal treatment including interstitial brachytherapy.

    Jünger, Stephanie Theresa / Rueß, Daniel / Kabbasch, Christoph / Gielen, Gerrit H / Pietsch, Torsten / Johann, Pascal / Landgraf, Pablo / Kocher, Martin / Goldbrunner, Roland / Simon, Thorsten / Ruge, Maximilian Ingolf

    Neuro-oncology practice

    2023  Volume 11, Issue 2, Page(s) 216–218

    Language English
    Publishing date 2023-11-30
    Publishing country England
    Document type Case Reports
    ZDB-ID 2768945-1
    ISSN 2054-2585 ; 2054-2577
    ISSN (online) 2054-2585
    ISSN 2054-2577
    DOI 10.1093/nop/npad075
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: BayMAP: a Bayesian hierarchical model for the analysis of PAR-CLIP data

    Huessler, Eva-Maria / Schäfer, Martin / Schwender, Holger / Landgraf, Pablo

    Bioinformatics 2019 June 1, v. 35, no. 12, p. 1992-2000

    2019  , Page(s) 1992–2000

    Abstract: Motivation Photoactivatable-Ribonucleoside-Enhanced Crosslinking and Immunoprecipitation (PAR-CLIP) is a biochemical method for detecting interaction sites of proteins with mRNA. This method introduces T-to-C substitutions at sequenced cDNA that help to ... ...

    Abstract Motivation Photoactivatable-Ribonucleoside-Enhanced Crosslinking and Immunoprecipitation (PAR-CLIP) is a biochemical method for detecting interaction sites of proteins with mRNA. This method introduces T-to-C substitutions at sequenced cDNA that help to detect binding sites on mRNA. However, T-to-C substitutions can also occur due to other reasons such as mismatches or SNPs. Only few statistical procedures exist for detecting binding sites in PAR-CLIP data. Most of these methods do not account for other types of substitutions than those induced by PAR-CLIP, and therefore, also report positions with high T-to-C substitution rates, e.g. SNPs, as binding sites. Moreover, none of these procedures allow to include additional information, e.g. the type of mRNA region, relevant for the biology of microRNA-binding sites. Results We have developed BayMAP, a procedure based on a fully Bayesian hierarchical model that takes other sources of substitutions into account. Furthermore, this model enables the incorporation of additional information into the analysis of PAR-CLIP data. This incorporation does not only permit a better detection of binding sites, but also a better understanding of the data and the biology of binding sites. In applications to simulated PAR-CLIP data, BayMAP distinguishes binding sites from noise better than existing methods. Additionally, it yields good estimates of the influence of the additional information. We here demonstrate BayMAP’s usability for real datasets even when noisy data is present.
    Keywords Bayesian theory ; bioinformatics ; crosslinking ; data collection ; models ; precipitin tests
    Language English
    Dates of publication 2019-0601
    Size p. 1992-2000
    Publishing place Oxford University Press
    Document type Article ; Online
    Note Use and reproduction
    ZDB-ID 1422668-6
    ISSN 1367-4803
    ISSN 1367-4803
    DOI 10.1093/bioinformatics/bty904
    Database NAL-Catalogue (AGRICOLA)

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  6. Article ; Online: BayMAP: a Bayesian hierarchical model for the analysis of PAR-CLIP data.

    Huessler, Eva-Maria / Schäfer, Martin / Schwender, Holger / Landgraf, Pablo

    Bioinformatics (Oxford, England)

    2018  Volume 35, Issue 12, Page(s) 1992–2000

    Abstract: Motivation: Photoactivatable-Ribonucleoside-Enhanced Crosslinking and Immunoprecipitation (PAR-CLIP) is a biochemical method for detecting interaction sites of proteins with mRNA. This method introduces T-to-C substitutions at sequenced cDNA that help ... ...

    Abstract Motivation: Photoactivatable-Ribonucleoside-Enhanced Crosslinking and Immunoprecipitation (PAR-CLIP) is a biochemical method for detecting interaction sites of proteins with mRNA. This method introduces T-to-C substitutions at sequenced cDNA that help to detect binding sites on mRNA. However, T-to-C substitutions can also occur due to other reasons such as mismatches or SNPs. Only few statistical procedures exist for detecting binding sites in PAR-CLIP data. Most of these methods do not account for other types of substitutions than those induced by PAR-CLIP, and therefore, also report positions with high T-to-C substitution rates, e.g. SNPs, as binding sites. Moreover, none of these procedures allow to include additional information, e.g. the type of mRNA region, relevant for the biology of microRNA-binding sites.
    Results: We have developed BayMAP, a procedure based on a fully Bayesian hierarchical model that takes other sources of substitutions into account. Furthermore, this model enables the incorporation of additional information into the analysis of PAR-CLIP data. This incorporation does not only permit a better detection of binding sites, but also a better understanding of the data and the biology of binding sites. In applications to simulated PAR-CLIP data, BayMAP distinguishes binding sites from noise better than existing methods. Additionally, it yields good estimates of the influence of the additional information. We here demonstrate BayMAP's usability for real datasets even when noisy data is present.
    Availability and implementation: BayMAP is freely available as an R package at http://stat.math.uni-duesseldorf.de/baymap.
    Supplementary information: Supplementary data are available at Bioinformatics online.
    MeSH term(s) Bayes Theorem ; Binding Sites ; Immunoprecipitation ; RNA, Messenger ; Ribonucleosides
    Chemical Substances RNA, Messenger ; Ribonucleosides
    Language English
    Publishing date 2018-11-12
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1422668-6
    ISSN 1367-4811 ; 1367-4803
    ISSN (online) 1367-4811
    ISSN 1367-4803
    DOI 10.1093/bioinformatics/bty904
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Identification of TEL-AML1 (ETV6-RUNX1) associated DNA and its impact on mRNA and protein output using ChIP, mRNA expression arrays and SILAC

    Linka, Yvonne / Ginzel, Sebastian / Borkhardt, Arndt / Landgraf, Pablo

    Genomics Data. 2014 Dec., v. 2

    2014  

    Abstract: The contribution of the most common reciprocal translocation in childhood B-cell precursor leukemia t(12;21)(p13;q22) to leukemia development is still under debate. Direct as well as secondary indirect effects of the TEL-AML1 fusion protein are commonly ... ...

    Abstract The contribution of the most common reciprocal translocation in childhood B-cell precursor leukemia t(12;21)(p13;q22) to leukemia development is still under debate. Direct as well as secondary indirect effects of the TEL-AML1 fusion protein are commonly recorded by using cell lines and patient samples, often bearing the TEL-AML1 fusion protein for decades. To identify direct targets of the fusion protein a short-term induction of TEL-AML1 is needed. We here describe in detail the experimental procedure, quality controls and contents of the ChIP, mRNA expression and SILAC datasets associated with the study published by Linka and colleagues in the Blood Cancer Journal [1] utilizing a short term induction of TEL-AML1 in an inducible precursor B-cell line model.
    Keywords B-lymphocytes ; DNA ; childhood ; data collection ; gene expression ; leukemia ; messenger RNA ; models ; patients ; reciprocal translocation
    Language English
    Dates of publication 2014-12
    Size p. 85-88.
    Publishing place Elsevier Inc.
    Document type Article
    ZDB-ID 2751131-5
    ISSN 2213-5960
    ISSN 2213-5960
    DOI 10.1016/j.gdata.2014.05.010
    Database NAL-Catalogue (AGRICOLA)

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  8. Article: Identification of TEL-AML1 (ETV6-RUNX1) associated DNA and its impact on mRNA and protein output using ChIP, mRNA expression arrays and SILAC.

    Linka, Yvonne / Ginzel, Sebastian / Borkhardt, Arndt / Landgraf, Pablo

    Genomics data

    2014  Volume 2, Page(s) 85–88

    Abstract: The contribution of the most common reciprocal translocation in childhood B-cell precursor leukemia t(12;21)(p13;q22) to leukemia development is still under debate. Direct as well as secondary indirect effects of the TEL-AML1 fusion protein are commonly ... ...

    Abstract The contribution of the most common reciprocal translocation in childhood B-cell precursor leukemia t(12;21)(p13;q22) to leukemia development is still under debate. Direct as well as secondary indirect effects of the TEL-AML1 fusion protein are commonly recorded by using cell lines and patient samples, often bearing the TEL-AML1 fusion protein for decades. To identify direct targets of the fusion protein a short-term induction of TEL-AML1 is needed. We here describe in detail the experimental procedure, quality controls and contents of the ChIP, mRNA expression and SILAC datasets associated with the study published by Linka and colleagues in the Blood Cancer Journal [1] utilizing a short term induction of TEL-AML1 in an inducible precursor B-cell line model.
    Language English
    Publishing date 2014-05-27
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2751131-5
    ISSN 2213-5960
    ISSN 2213-5960
    DOI 10.1016/j.gdata.2014.05.010
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Book ; Online ; Thesis: Identifizierung des peroxisomalen Targeting-Signals des Adrenoleukodystrophie-Proteins

    Landgraf, Pablo S

    2004  

    Author's details vorgelegt von Pablo S. Landgraf
    Language German
    Size Online-Ressource
    Document type Book ; Online ; Thesis
    Thesis / German Habilitation thesis Univ., Diss--München, 2004
    Database Former special subject collection: coastal and deep sea fishing

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  10. Article ; Online: Arterial Hypertension in a 10-Year-Old Girl.

    Meeser, Alina / Beck, Bodo B / Dübbers, Martin / Habbig, Sandra / Kobe, Carsten / Koerber, Friederike / Dötsch, Jörg / Nüsken, Kai-Dietrich / Weber, Lutz T / Landgraf, Pablo / DeCarolis, Boris / Liebau, Max C

    American journal of kidney diseases : the official journal of the National Kidney Foundation

    2021  Volume 77, Issue 3, Page(s) A11–A13

    MeSH term(s) Adrenal Gland Neoplasms/complications ; Adrenal Gland Neoplasms/diagnostic imaging ; Adrenal Gland Neoplasms/metabolism ; Adrenal Gland Neoplasms/surgery ; Catecholamines/metabolism ; Child ; Female ; Humans ; Hypertension/etiology ; Hypertension/metabolism ; Magnetic Resonance Angiography ; Pheochromocytoma/complications ; Pheochromocytoma/diagnostic imaging ; Pheochromocytoma/metabolism ; Pheochromocytoma/surgery ; Renal Artery Obstruction/diagnostic imaging ; Renal Artery Obstruction/etiology ; Ultrasonography, Doppler, Color ; von Hippel-Lindau Disease/diagnosis ; von Hippel-Lindau Disease/genetics
    Chemical Substances Catecholamines
    Language English
    Publishing date 2021-02-23
    Publishing country United States
    Document type Case Reports ; Journal Article
    ZDB-ID 604539-x
    ISSN 1523-6838 ; 0272-6386
    ISSN (online) 1523-6838
    ISSN 0272-6386
    DOI 10.1053/j.ajkd.2020.08.019
    Database MEDical Literature Analysis and Retrieval System OnLINE

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