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  1. Article: A basally active cGAS-STING pathway limits SARS-CoV-2 replication in a subset of ACE2 positive airway cell models.

    Puray-Chavez, Maritza / LaPak, Kyle M / Jasuja, Ria / Pan, Jiehong / Xu, Jian / Eschbach, Jenna E / Mohammed, Shawn / Lawson, Dana Q / Wang, Qibo / Brody, Steven L / Major, Michael B / Goldfarb, Dennis / Kutluay, Sebla B

    bioRxiv : the preprint server for biology

    2024  

    Abstract: Host factors that define the cellular tropism of SARS-CoV-2 beyond the cognate ACE2 receptor are poorly defined. From a screen of human airway derived cell lines that express varying levels of ACE2/TMPRSS2, we found a subset that express comparably high ... ...

    Abstract Host factors that define the cellular tropism of SARS-CoV-2 beyond the cognate ACE2 receptor are poorly defined. From a screen of human airway derived cell lines that express varying levels of ACE2/TMPRSS2, we found a subset that express comparably high endogenous levels of ACE2 but surprisingly did not support SARS-CoV-2 replication. Here we report that this resistance is mediated by a basally active cGAS-STING pathway culminating in interferon (IFN)-mediated restriction of SARS-CoV-2 replication at a post-entry step. Pharmacological inhibition of JAK1/2, depletion of the IFN-α receptor and cGAS-STING pathway effectors substantially increased SARS-CoV-2 replication in these cell models. While depletion of cGAS or STING was sufficient to reduce the preexisting levels of IFN-stimulated genes (ISGs), SARS-CoV-2 infection in STING knockout cells independently induced ISG expression. Remarkably, SARS-CoV-2-induced ISG expression in STING knockout cell as well as in primary human airway cultures was limited to uninfected bystander cells, demonstrating efficient antagonism of the type I/III IFN-pathway, but not viral sensing or IFN production, in productively infected cells. Of note, SARS-CoV-2-infected primary human airway cells also displayed markedly lower levels of STING expression, raising the possibility that SARS-CoV-2 can target STING expression or preferentially infect cells that express low levels of STING. Finally, ectopic ACE2 overexpression overcame the IFN-mediated blocks, suggesting the ability of SARS-CoV-2 to overcome these possibly saturable blocks to infection. Our study highlights that in addition to viral receptors, basal activation of the cGAS-STING pathway and innate immune defenses may contribute to defining SARS-CoV-2 cellular tropism.
    Language English
    Publishing date 2024-01-08
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2024.01.07.574522
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: A basally active cGAS-STING pathway limits SARS-CoV-2 replication in a subset of ACE2 positive airway cell models

    Puray-Chavez, Maritza / LaPak, Kyle M. / Jasuja, Ria / Pan, Jiehong / Xu, Jian / Eschbach, Jenna E. / Mohammed, Shawn / Lawson, Dana Q. / Wang, Qibo / Brody, Steven L. / Major, Michael B. / Goldfarb, Dennis / Kutluay, Sebla B.

    bioRxiv

    Abstract: Host factors that define the cellular tropism of SARS-CoV-2 beyond the cognate ACE2 receptor are poorly defined. From a screen of human airway derived cell lines that express varying levels of ACE2/TMPRSS2, we found a subset that express comparably high ... ...

    Abstract Host factors that define the cellular tropism of SARS-CoV-2 beyond the cognate ACE2 receptor are poorly defined. From a screen of human airway derived cell lines that express varying levels of ACE2/TMPRSS2, we found a subset that express comparably high endogenous levels of ACE2 but surprisingly did not support SARS-CoV-2 replication. Here we report that this resistance is mediated by a basally active cGAS-STING pathway culminating in interferon (IFN)-mediated restriction of SARS-CoV-2 replication at a post-entry step. Pharmacological inhibition of JAK1/2, depletion of the IFN-alpha; receptor and cGAS-STING pathway effectors substantially increased SARS-CoV-2 replication in these cell models. While depletion of cGAS or STING was sufficient to reduce the preexisting levels of IFN-stimulated genes (ISGs), SARS-CoV-2 infection in STING knockout cells independently induced ISG expression. Remarkably, SARS-CoV-2-induced ISG expression in STING knockout cell as well as in primary human airway cultures was limited to uninfected bystander cells, demonstrating efficient antagonism of the type I/III IFN-pathway, but not viral sensing or IFN production, in productively infected cells. Of note, SARS-CoV-2-infected primary human airway cells also displayed markedly lower levels of STING expression, raising the possibility that SARS-CoV-2 can target STING expression or preferentially infect cells that express low levels of STING. Finally, ectopic ACE2 overexpression overcame the IFN-mediated blocks, suggesting the ability of SARS-CoV-2 to overcome these possibly saturable blocks to infection. Our study highlights that in addition to viral receptors, basal activation of the cGAS-STING pathway and innate immune defenses may contribute to defining SARS-CoV-2 cellular tropism.
    Keywords covid19
    Language English
    Publishing date 2024-01-08
    Publisher Cold Spring Harbor Laboratory
    Document type Article ; Online
    DOI 10.1101/2024.01.07.574522
    Database COVID19

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  3. Article ; Online: Capsid Lattice Destabilization Leads to Premature Loss of the Viral Genome and Integrase Enzyme during HIV-1 Infection.

    Eschbach, Jenna E / Elliott, Jennifer L / Li, Wen / Zadrozny, Kaneil K / Davis, Keanu / Mohammed, Shawn J / Lawson, Dana Q / Pornillos, Owen / Engelman, Alan N / Kutluay, Sebla B

    Journal of virology

    2020  Volume 95, Issue 2

    Abstract: The human immunodeficiency virus type 1 (HIV-1) capsid (CA) protein forms a conical lattice around the viral ribonucleoprotein complex (vRNP) consisting of a dimeric viral genome and associated proteins, together constituting the viral core. Upon entry ... ...

    Abstract The human immunodeficiency virus type 1 (HIV-1) capsid (CA) protein forms a conical lattice around the viral ribonucleoprotein complex (vRNP) consisting of a dimeric viral genome and associated proteins, together constituting the viral core. Upon entry into target cells, the viral core undergoes a process termed uncoating, during which CA molecules are shed from the lattice. Although the timing and degree of uncoating are important for reverse transcription and integration, the molecular basis of this phenomenon remains unclear. Using complementary approaches, we assessed the impact of core destabilization on the intrinsic stability of the CA lattice
    MeSH term(s) Animals ; Capsid/metabolism ; Capsid Proteins/genetics ; Capsid Proteins/metabolism ; Cell Line ; Cricetinae ; Genome, Viral ; HIV Integrase/metabolism ; HIV-1/physiology ; Humans ; Mutation ; RNA, Viral/metabolism ; Reverse Transcription ; Viral Core Proteins/metabolism ; Virion/genetics ; Virion/metabolism ; Virus Uncoating
    Chemical Substances Capsid Proteins ; RNA, Viral ; Viral Core Proteins ; HIV Integrase (EC 2.7.7.-)
    Language English
    Publishing date 2020-12-22
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 80174-4
    ISSN 1098-5514 ; 0022-538X
    ISSN (online) 1098-5514
    ISSN 0022-538X
    DOI 10.1128/JVI.00984-20
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Integrase-RNA interactions underscore the critical role of integrase in HIV-1 virion morphogenesis.

    Elliott, Jennifer L / Eschbach, Jenna E / Koneru, Pratibha C / Li, Wen / Puray-Chavez, Maritza / Townsend, Dana / Lawson, Dana Q / Engelman, Alan N / Kvaratskhelia, Mamuka / Kutluay, Sebla B

    eLife

    2020  Volume 9

    Abstract: A large number of human immunodeficiency virus 1 (HIV-1) integrase (IN) alterations, referred to as class II substitutions, exhibit pleiotropic effects during virus replication. However, the underlying mechanism for the class II phenotype is not known. ... ...

    Abstract A large number of human immunodeficiency virus 1 (HIV-1) integrase (IN) alterations, referred to as class II substitutions, exhibit pleiotropic effects during virus replication. However, the underlying mechanism for the class II phenotype is not known. Here we demonstrate that all tested class II IN substitutions compromised IN-RNA binding in virions by one of the three distinct mechanisms: (i) markedly reducing IN levels thus precluding the formation of IN complexes with viral RNA; (ii) adversely affecting functional IN multimerization and consequently impairing IN binding to viral RNA; and (iii) directly compromising IN-RNA interactions without substantially affecting IN levels or functional IN multimerization. Inhibition of IN-RNA interactions resulted in the mislocalization of viral ribonucleoprotein complexes outside the capsid lattice, which led to premature degradation of the viral genome and IN in target cells. Collectively, our studies uncover causal mechanisms for the class II phenotype and highlight an essential role of IN-RNA interactions for accurate virion maturation.
    MeSH term(s) Capsid/metabolism ; Genome, Viral/genetics ; HEK293 Cells ; HIV Infections/virology ; HIV Integrase/genetics ; HIV Integrase/metabolism ; HIV-1/enzymology ; HIV-1/genetics ; HIV-1/growth & development ; HIV-1/physiology ; Humans ; Phenotype ; Protein Binding ; Protein Multimerization ; RNA, Viral/metabolism ; Ribonucleoproteins/metabolism ; Virion/enzymology ; Virion/genetics ; Virion/growth & development ; Virion/physiology ; Virus Integration ; Virus Replication
    Chemical Substances RNA, Viral ; Ribonucleoproteins ; HIV Integrase (EC 2.7.7.-) ; p31 integrase protein, Human immunodeficiency virus 1 (YY6481J2FF)
    Language English
    Publishing date 2020-09-22
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 2687154-3
    ISSN 2050-084X ; 2050-084X
    ISSN (online) 2050-084X
    ISSN 2050-084X
    DOI 10.7554/eLife.54311
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Allosteric HIV-1 Integrase Inhibitors Lead to Premature Degradation of the Viral RNA Genome and Integrase in Target Cells.

    Madison, Michaela K / Lawson, Dana Q / Elliott, Jennifer / Ozantürk, Ayşe Naz / Koneru, Pratibha C / Townsend, Dana / Errando, Manel / Kvaratskhelia, Mamuka / Kutluay, Sebla B

    Journal of virology

    2017  Volume 91, Issue 17

    Abstract: Recent evidence indicates that inhibition of HIV-1 integrase (IN) binding to the viral RNA genome by allosteric integrase inhibitors (ALLINIs) or through mutations within IN yields aberrant particles in which the viral ribonucleoprotein complexes (vRNPs) ...

    Abstract Recent evidence indicates that inhibition of HIV-1 integrase (IN) binding to the viral RNA genome by allosteric integrase inhibitors (ALLINIs) or through mutations within IN yields aberrant particles in which the viral ribonucleoprotein complexes (vRNPs) are eccentrically localized outside the capsid lattice. These particles are noninfectious and are blocked at an early reverse transcription stage in target cells. However, the basis of this reverse transcription defect is unknown. Here, we show that the viral RNA genome and IN from ALLINI-treated virions are prematurely degraded in target cells, whereas reverse transcriptase remains active and stably associated with the capsid lattice. The aberrantly shaped cores in ALLINI-treated particles can efficiently saturate and be degraded by a restricting TRIM5 protein, indicating that they are still composed of capsid proteins arranged in a hexagonal lattice. Notably, the fates of viral core components follow a similar pattern in cells infected with eccentric particles generated by mutations within IN that inhibit its binding to the viral RNA genome. We propose that IN-RNA interactions allow packaging of both the viral RNA genome and IN within the protective capsid lattice to ensure subsequent reverse transcription and productive infection in target cells. Conversely, disruption of these interactions by ALLINIs or mutations in IN leads to premature degradation of both the viral RNA genome and IN, as well as the spatial separation of reverse transcriptase from the viral genome during early steps of infection.
    MeSH term(s) Animals ; CHO Cells ; Capsid/metabolism ; Carrier Proteins/metabolism ; Cricetulus ; Genome, Viral ; HEK293 Cells ; HIV Integrase/metabolism ; HIV Integrase Inhibitors/pharmacology ; HIV Reverse Transcriptase/metabolism ; HIV-1/drug effects ; HIV-1/genetics ; Humans ; RNA, Viral/genetics ; Tripartite Motif Proteins ; Ubiquitin-Protein Ligases ; Virus Assembly/drug effects
    Chemical Substances Carrier Proteins ; HIV Integrase Inhibitors ; RNA, Viral ; Tripartite Motif Proteins ; TRIM5 protein, human (EC 2.3.2.27) ; Ubiquitin-Protein Ligases (EC 2.3.2.27) ; HIV Integrase (EC 2.7.7.-) ; HIV Reverse Transcriptase (EC 2.7.7.49) ; p31 integrase protein, Human immunodeficiency virus 1 (YY6481J2FF)
    Language English
    Publishing date 2017-08-10
    Publishing country United States
    Document type Journal Article
    ZDB-ID 80174-4
    ISSN 1098-5514 ; 0022-538X
    ISSN (online) 1098-5514
    ISSN 0022-538X
    DOI 10.1128/JVI.00821-17
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Systematic analysis of SARS-CoV-2 infection of an ACE2-negative human airway cell.

    Puray-Chavez, Maritza / LaPak, Kyle M / Schrank, Travis P / Elliott, Jennifer L / Bhatt, Dhaval P / Agajanian, Megan J / Jasuja, Ria / Lawson, Dana Q / Davis, Keanu / Rothlauf, Paul W / Liu, Zhuoming / Jo, Heejoon / Lee, Nakyung / Tenneti, Kasyap / Eschbach, Jenna E / Shema Mugisha, Christian / Cousins, Emily M / Cloer, Erica W / Vuong, Hung R /
    VanBlargan, Laura A / Bailey, Adam L / Gilchuk, Pavlo / Crowe, James E / Diamond, Michael S / Hayes, D Neil / Whelan, Sean P J / Horani, Amjad / Brody, Steven L / Goldfarb, Dennis / Major, M Ben / Kutluay, Sebla B

    Cell reports

    2021  Volume 36, Issue 2, Page(s) 109364

    Abstract: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike (S) variants govern transmissibility, responsiveness to vaccination, and disease severity. In a screen for new models of SARS-CoV-2 infection, we identify human H522 lung adenocarcinoma ... ...

    Abstract Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike (S) variants govern transmissibility, responsiveness to vaccination, and disease severity. In a screen for new models of SARS-CoV-2 infection, we identify human H522 lung adenocarcinoma cells as naturally permissive to SARS-CoV-2 infection despite complete absence of angiotensin-converting enzyme 2 (ACE2) expression. Remarkably, H522 infection requires the E484D S variant; viruses expressing wild-type S are not infectious. Anti-S monoclonal antibodies differentially neutralize SARS-CoV-2 E484D S in H522 cells as compared to ACE2-expressing cells. Sera from vaccinated individuals block this alternative entry mechanism, whereas convalescent sera are less effective. Although the H522 receptor remains unknown, depletion of surface heparan sulfates block H522 infection. Temporally resolved transcriptomic and proteomic profiling reveal alterations in cell cycle and the antiviral host cell response, including MDA5-dependent activation of type I interferon signaling. These findings establish an alternative SARS-CoV-2 host cell receptor for the E484D SARS-CoV-2 variant, which may impact tropism of SARS-CoV-2 and consequently human disease pathogenesis.
    MeSH term(s) Amino Acid Substitution ; Angiotensin-Converting Enzyme 2 ; Animals ; Antibodies, Monoclonal/immunology ; Antibodies, Viral/immunology ; COVID-19/immunology ; COVID-19/metabolism ; Cell Cycle ; Cell Line, Tumor ; Chlorocebus aethiops ; Gene Expression Profiling ; Heparitin Sulfate/metabolism ; Humans ; Interferon Type I/metabolism ; Interferon-Induced Helicase, IFIH1/metabolism ; Models, Biological ; Protein Binding ; Protein Domains ; Proteomics ; Receptors, Virus/metabolism ; SARS-CoV-2 ; Serine Endopeptidases/metabolism ; Signal Transduction ; Spike Glycoprotein, Coronavirus/genetics ; Spike Glycoprotein, Coronavirus/metabolism ; Vero Cells ; Virus Internalization ; Virus Replication
    Chemical Substances Antibodies, Monoclonal ; Antibodies, Viral ; Interferon Type I ; Receptors, Virus ; Spike Glycoprotein, Coronavirus ; spike protein, SARS-CoV-2 ; Heparitin Sulfate (9050-30-0) ; ACE2 protein, human (EC 3.4.17.23) ; Angiotensin-Converting Enzyme 2 (EC 3.4.17.23) ; Serine Endopeptidases (EC 3.4.21.-) ; TMPRSS2 protein, human (EC 3.4.21.-) ; IFIH1 protein, human (EC 3.6.1.-) ; Interferon-Induced Helicase, IFIH1 (EC 3.6.4.13)
    Language English
    Publishing date 2021-06-23
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2649101-1
    ISSN 2211-1247 ; 2211-1247
    ISSN (online) 2211-1247
    ISSN 2211-1247
    DOI 10.1016/j.celrep.2021.109364
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Systematic analysis of SARS-CoV-2 infection of an ACE2-negative human airway cell.

    Puray-Chavez, Maritza / LaPak, Kyle M / Schrank, Travis P / Elliott, Jennifer L / Bhatt, Dhaval P / Agajanian, Megan J / Jasuja, Ria / Lawson, Dana Q / Davis, Keanu / Rothlauf, Paul W / Jo, Heejoon / Lee, Nakyung / Tenneti, Kasyap / Eschbach, Jenna E / Mugisha, Christian Shema / Vuong, Hung R / Bailey, Adam L / Hayes, D Neil / Whelan, Sean P J /
    Horani, Amjad / Brody, Steven L / Goldfarb, Dennis / Major, M Ben / Kutluay, Sebla B

    bioRxiv : the preprint server for biology

    2021  

    Abstract: ... ...

    Abstract Established
    Language English
    Publishing date 2021-03-01
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2021.03.01.433431
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Systematic analysis of SARS-CoV-2 infection of an ACE2-negative human airway cell

    Puray-Chavez, Maritza / Lapak, Kyle M / Schrank, Travis P. / Elliott, Jennifer L / Bhatt, Dhaval P / Agajanian, Megan J / Jasuja, Ria / Lawson, Dana Q / Davis, Keanu / Rothlauf, Paul W / Jo, Heejoon / Lee, Nakyung / Tenneti, Kasyap / Eschbach, Jenna E / Shema Mugisha, Christian / Vuong, Hung R / Bailey, Adam L / Hayes, D. Neil / Whelan, Sean P.J. /
    Horani, Amjad / Brody, Steven L / Goldfarb, Dennis / Major, M. Ben / Kutluay, Sebla B

    bioRxiv

    Abstract: Established in vitro models for SARS-CoV-2 infection are limited and include cell lines of non-human origin and those engineered to overexpress ACE2, the cognate host cell receptor. We identified human H522 lung adenocarcinoma cells as naturally ... ...

    Abstract Established in vitro models for SARS-CoV-2 infection are limited and include cell lines of non-human origin and those engineered to overexpress ACE2, the cognate host cell receptor. We identified human H522 lung adenocarcinoma cells as naturally permissive to SARS-CoV-2 infection despite complete absence of ACE2. Infection of H522 cells required the SARS-CoV-2 spike protein, though in contrast to ACE2-dependent models, spike alone was not sufficient for H522 infection. Temporally resolved transcriptomic and proteomic profiling revealed alterations in cell cycle and the antiviral host cell response, including MDA5-dependent activation of type-I interferon signaling. Focused chemical screens point to important roles for clathrin-mediated endocytosis and endosomal cathepsins in SARS-CoV-2 infection of H522 cells. These findings imply the utilization of an alternative SARS-CoV-2 host cell receptor which may impact tropism of SARS-CoV-2 and consequently human disease pathogenesis.
    Keywords covid19
    Language English
    Publishing date 2021-03-01
    Publisher Cold Spring Harbor Laboratory
    Document type Article ; Online
    DOI 10.1101/2021.03.01.433431
    Database COVID19

    Kategorien

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