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  1. Article ; Online: Combining virtual screening with cis-/trans-cleavage enzymatic assays effectively reveals broad-spectrum inhibitors that target the main proteases of SARS-CoV-2 and MERS-CoV.

    Chang, Yu-Jen / Le, Uyen Nguyen Phuong / Liu, Jia-Jun / Li, Sin-Rong / Chao, Shao-Ting / Lai, Hsueh-Chou / Lin, Yu-Feng / Hsu, Kai-Cheng / Lu, Chih-Hao / Lin, Cheng-Wen

    Antiviral research

    2023  Volume 216, Page(s) 105653

    Abstract: The main protease ( ... ...

    Abstract The main protease (M
    MeSH term(s) Humans ; SARS-CoV-2 ; Middle East Respiratory Syndrome Coronavirus ; COVID-19 ; Protease Inhibitors/pharmacology ; Protease Inhibitors/chemistry ; Antiviral Agents/pharmacology ; Antiviral Agents/chemistry ; Cysteine Endopeptidases/chemistry ; Molecular Docking Simulation
    Chemical Substances Protease Inhibitors ; Antiviral Agents ; Cysteine Endopeptidases (EC 3.4.22.-)
    Language English
    Publishing date 2023-06-14
    Publishing country Netherlands
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 306628-9
    ISSN 1872-9096 ; 0166-3542
    ISSN (online) 1872-9096
    ISSN 0166-3542
    DOI 10.1016/j.antiviral.2023.105653
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Functional assessments of SARS-CoV-2 single-round infectious particles with variant-specific spike proteins on infectivity, drug sensitivity, and antibody neutralization.

    Su, Wen-Chi / Chen, Zan-Yu / Chang, Young-Sheng / Jeng, King-Song / Le, Uyen Nguyen Phuong / Chou, Yu-Chi / Kuo, Li-Lan / Melano, Ivonne / Jesse / Wang, Wei-Jan / Song, Ying-Chyi / Li, Sin-Rong / Hung, Mien-Chie / Lai, Michael M C / Lin, Cheng-Wen

    Antiviral research

    2023  Volume 220, Page(s) 105744

    Abstract: Working with severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) is restricted to biosafety level III (BSL-3) laboratory. The study used a trans-complementation system consisting of virus-like particles (VLPs) and DNA-launched replicons to ... ...

    Abstract Working with severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) is restricted to biosafety level III (BSL-3) laboratory. The study used a trans-complementation system consisting of virus-like particles (VLPs) and DNA-launched replicons to generate SARS-CoV-2 single-round infectious particles (SRIPs) with variant-specific spike (S) proteins. S gene of Wuhan-Hu-1 strain (S
    MeSH term(s) Humans ; COVID-19 ; SARS-CoV-2/metabolism ; Spike Glycoprotein, Coronavirus ; Antibodies, Neutralizing ; Antibodies, Viral
    Chemical Substances spike protein, SARS-CoV-2 ; Spike Glycoprotein, Coronavirus ; Antibodies, Neutralizing ; Antibodies, Viral
    Language English
    Publishing date 2023-11-07
    Publishing country Netherlands
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 306628-9
    ISSN 1872-9096 ; 0166-3542
    ISSN (online) 1872-9096
    ISSN 0166-3542
    DOI 10.1016/j.antiviral.2023.105744
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Comparison between the analytical sensitivity and clinical performance of two cobas SARS-CoV-2 tests based on high-throughput and point-of-care systems.

    Lin, Tsai-Hsiu / Bui, Ngoc-Niem / Chang, Yu-Chang / Hsu, Li-Yun / Su, Yang-Di / Chang, Chieh-Min / Hong, Wei-An / Le, Uyen Nguyen Phuong / Huang, Su-Hua / Lin, Cheng-Wen

    BioMedicine

    2022  Volume 12, Issue 2, Page(s) 40–46

    Abstract: Objectives: This study examined analytical sensitivity, specificity, and the clinical performance in detecting SARS-CoV-2 of the Cobas SARS-CoV-2 Test based on the high-throughput Cobas 6800 system and the Cobas SARS-CoV-2 & Flu A/B Test based on the ... ...

    Abstract Objectives: This study examined analytical sensitivity, specificity, and the clinical performance in detecting SARS-CoV-2 of the Cobas SARS-CoV-2 Test based on the high-throughput Cobas 6800 system and the Cobas SARS-CoV-2 & Flu A/B Test based on the point-of-care cobas Liat system.
    Methods: The commercial reagents containing SARS-CoV-2 RNA subgenomes were diluted for assessing the sensitivity of the RT-qPCR assay. 385 nasopharyngeal swab specimens taken from contacts of COVID-19 cases were tested for the SARS-CoV-2 detection with both Cobas SARS-CoV-2 Tests.
    Results: In analytical sensitivity assays, the Cobas SARS-CoV-2 & Flu A/B Test on the Liat system had a lower limit of detection (12.5-25 copies/mL) than the cobas SARS-CoV-2 Test on the cobas 6800 system (25-50 copies/mL). In clinical performance assays, the cobas SARS-CoV-2 Test demonstrated 89.36% (42 out of 47) PPA (positive percent agreement) and 98.82% (334 out of 338) NPA (negative percent agreement) compared to the results of the Cobas SARS-CoV-2 & Flu A/B test. Among five discordant specimens, four had the positive result of the cobas SARS-CoV-2 test, but the negative result of the cobas SARS-CoV-2 & Flu A/B Test. Moreover, these discordant specimens had the Ct values of greater than 33 for the cobas SARS-CoV-2 Test, implying a very small number of virions in the samples. Remarkably, four specimens with a presumptive positive result of the cobas SARS-CoV-2 test had been confirmed by the Cobas SARS-CoV-2 & Flu A/B Test. Next, the scatter plots of the Ct values showed a highly positive correlation between cobas SARS-CoV-2 & Flu A/B Test and the cobas SARS-CoV-2 Test (R-squared value = 0.954-0.962).
    Conclusions: Both SARS-CoV2 tests of the cobas 6800 and Liat systems produce reliable high throughput and point-of-care assays respectively for the early virus detection and the personal care decision-making during COVID-19 pandemic.
    Language English
    Publishing date 2022-06-01
    Publishing country China (Republic : 1949- )
    Document type Journal Article
    ZDB-ID 2648006-2
    ISSN 2211-8039 ; 2211-8020
    ISSN (online) 2211-8039
    ISSN 2211-8020
    DOI 10.37796/2211-8039.1334
    Database MEDical Literature Analysis and Retrieval System OnLINE

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