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  1. Article ; Online: Urechistachykinin I triggers mitochondrial dysfunction leading to a ferroptosis-like response in Saccharomyces cerevisiae.

    Han, Giyeol / Lee, Dong Gun

    Journal of applied microbiology

    2024  Volume 135, Issue 3

    Abstract: Aims: The purpose of this paper was to demonstrate the antimicrobial activity of urechistachykinin I (LRQSQFVGSR-NH2) extracted from Urechis unicinctus,and its mode of action dependent on mitochondrial dysfunction.: Methods and results: The ... ...

    Abstract Aims: The purpose of this paper was to demonstrate the antimicrobial activity of urechistachykinin I (LRQSQFVGSR-NH2) extracted from Urechis unicinctus,and its mode of action dependent on mitochondrial dysfunction.
    Methods and results: The antifungal activity of urechistachykinin I generated reactive oxygen species (ROS), as demonstrated with MitoSOX Red and hydroxyphenyl fluorescein (HPF). Overaccumulation of ROS caused oxidative damage to cells by inducing mitochondrial dysfunction. Mitochondrial disruption resulted in cell death, creating several hallmarks that included lipid peroxidation, glutathione oxidation, and depolarization. Moreover, the loss of mitochondria changed the calcium ion imbalance by depolarization of the mitochondrial membrane. In particular, iron accumulation and DNA fragmentation measurement determined the type of cell death. Our results indicate that urechistachykinin I treatment induced ferroptosis-like death in Saccharomyces cerevisiae via mitochondrial dysfunction.
    Conclusions: Urechistachykinin I treatment induced mitochondrial dysfunction in S. cerevisiae by generating ROS, and the subsequent oxidative damage caused the ferroptosis-like cell death.
    MeSH term(s) Humans ; Saccharomyces cerevisiae/metabolism ; Reactive Oxygen Species/metabolism ; Ferroptosis ; Mitochondrial Diseases ; Neuropeptides
    Chemical Substances Reactive Oxygen Species ; urechistachykinin I (149097-03-0) ; Neuropeptides
    Language English
    Publishing date 2024-01-24
    Publishing country England
    Document type Journal Article
    ZDB-ID 1358023-1
    ISSN 1365-2672 ; 1364-5072
    ISSN (online) 1365-2672
    ISSN 1364-5072
    DOI 10.1093/jambio/lxae011
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Ferroptosis-Like Death in Microorganisms: A Novel Programmed Cell Death Following Lipid Peroxidation.

    Kwun, Min Seok / Lee, Dong Gun

    Journal of microbiology and biotechnology

    2023  Volume 33, Issue 8, Page(s) 992–997

    Abstract: Ferroptosis is a new kind of programmed cell death of which occurrence in microorganisms is not clearly verified. The elevated level of reactive oxygen species (ROS) influences cellular metabolisms through highly reactive hydroxyl radical formation under ...

    Abstract Ferroptosis is a new kind of programmed cell death of which occurrence in microorganisms is not clearly verified. The elevated level of reactive oxygen species (ROS) influences cellular metabolisms through highly reactive hydroxyl radical formation under the iron-dependent Fenton reaction. Iron contributes to ROS production and acts as a cofactor for lipoxygenase to catalyze poly unsaturated fatty acid (PUFA) oxidation, exerting oxidative damage in cells. While ferroptosis is known to take place only in mammalian cells, recent studies discovered the possible ferroptosis-like death in few specific microorganisms. Capacity of integrating PUFA into intracellular membrane phospholipid has been considered as a key factor in bacterial or fungal ferroptosis-like death.
    MeSH term(s) Animals ; Lipid Peroxidation ; Ferroptosis ; Reactive Oxygen Species/metabolism ; Apoptosis ; Fatty Acids, Unsaturated ; Iron/metabolism ; Mammals/metabolism
    Chemical Substances Reactive Oxygen Species ; Fatty Acids, Unsaturated ; Iron (E1UOL152H7)
    Language English
    Publishing date 2023-07-20
    Publishing country Korea (South)
    Document type Journal Article ; Review
    ZDB-ID 2412195-2
    ISSN 1738-8872 ; 1738-8872
    ISSN (online) 1738-8872
    ISSN 1738-8872
    DOI 10.4014/jmb.2307.07002
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Urechistachykinin I induced ferroptosis by accumulating reactive oxygen species in Vibrio vulnificus.

    Han, Giyeol / Lee, Dong Gun

    Applied microbiology and biotechnology

    2023  Volume 107, Issue 24, Page(s) 7571–7580

    Abstract: Antimicrobial peptides (AMPs), such as urechistachykinin I (LRQSQFVGSR- ... ...

    Abstract Antimicrobial peptides (AMPs), such as urechistachykinin I (LRQSQFVGSR-NH
    MeSH term(s) Animals ; Reactive Oxygen Species/metabolism ; Vibrio vulnificus/metabolism ; Ferroptosis ; Anti-Infective Agents ; Mammals/metabolism
    Chemical Substances Reactive Oxygen Species ; urechistachykinin I (149097-03-0) ; Anti-Infective Agents
    Language English
    Publishing date 2023-10-05
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 392453-1
    ISSN 1432-0614 ; 0171-1741 ; 0175-7598
    ISSN (online) 1432-0614
    ISSN 0171-1741 ; 0175-7598
    DOI 10.1007/s00253-023-12802-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Identification of propagated defects to reduce software testing cost via mutation testing.

    Lee, Dong-Gun / Seo, Yeong-Seok

    Mathematical biosciences and engineering : MBE

    2022  Volume 19, Issue 6, Page(s) 6124–6140

    Abstract: In software engineering, testing has long been a research area of software maintenance. Testing is extremely expensive, and there is no guarantee that all defects will be found within a single round of testing. Therefore, fixing defects that are not ... ...

    Abstract In software engineering, testing has long been a research area of software maintenance. Testing is extremely expensive, and there is no guarantee that all defects will be found within a single round of testing. Therefore, fixing defects that are not discovered by a single round of testing is important for reducing the test costs. During the software maintenance process, testing is conducted within the scope of a set of test cases called a test suite. Mutation testing is a method that uses mutants to evaluate whether the test cases of the test suite are appropriate. In this paper, an approach is proposed that uses the mutants of a mutation test to identify defects that are not discovered through a single round of testing. The proposed method simultaneously applies two or more mutants to a single program to define and record the relationships between different lines of code. In turn, these relationships are examined using the defects that were discovered by a single round of testing, and possible defects are recommended from among the recorded candidates. To evaluate the proposed method, a comparative study was conducted using the fault localization method, which is commonly employed in defect prediction, as well as the Defects4J defect prediction dataset, which is widely used in software defect prediction. The results of the evaluation showed that the proposed method achieves a better performance than seven other fault localization methods (Tarantula, Ochiai, Opt2, Barinel, Dstar2, Muse, and Jaccard).
    MeSH term(s) Mutation ; Software
    Language English
    Publishing date 2022-05-06
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2265126-3
    ISSN 1551-0018 ; 1551-0018
    ISSN (online) 1551-0018
    ISSN 1551-0018
    DOI 10.3934/mbe.2022286
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Antibacterial Mode of Action of β-Amyrin Promotes Apoptosis-Like Death in

    Han, Giyeol / Lee, Dong Gun

    Journal of microbiology and biotechnology

    2022  Volume 32, Issue 12, Page(s) 1547–1552

    Abstract: β-Amyrin is a pentacyclic triterpene widely distributed in leaves and stems worldwide. The ability of β-amyrin to induce the production of reactive oxygen species (ROS) in microorganisms suggests its potential as an antimicrobial agent. Thus, this study ... ...

    Abstract β-Amyrin is a pentacyclic triterpene widely distributed in leaves and stems worldwide. The ability of β-amyrin to induce the production of reactive oxygen species (ROS) in microorganisms suggests its potential as an antimicrobial agent. Thus, this study aimed to elucidate the antibacterial mode of action of β-amyrin. We treated
    MeSH term(s) Escherichia coli/genetics ; Reactive Oxygen Species/metabolism ; Anti-Bacterial Agents/pharmacology ; Anti-Bacterial Agents/metabolism ; Apoptosis ; Caspases/metabolism ; Glutathione/metabolism
    Chemical Substances Reactive Oxygen Species ; beta-amyrin (KM8353IPSO) ; Anti-Bacterial Agents ; Caspases (EC 3.4.22.-) ; Glutathione (GAN16C9B8O)
    Language English
    Publishing date 2022-11-09
    Publishing country Korea (South)
    Document type Journal Article
    ZDB-ID 2412195-2
    ISSN 1738-8872 ; 1738-8872
    ISSN (online) 1738-8872
    ISSN 1738-8872
    DOI 10.4014/jmb.2209.09040
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Urgent need for novel antibiotics in Republic of Korea to combat multidrug-resistant bacteria.

    Lee, Hyo-Jin / Lee, Dong-Gun

    The Korean journal of internal medicine

    2022  Volume 37, Issue 2, Page(s) 271–280

    Abstract: Multidrug resistance in bacteria is an important issue and is increasing in frequency worldwide because of the limitations of therapeutic agents. From 2010 to 2019, 14 new systemic antibiotics received regulatory approval in the United States. However, ... ...

    Abstract Multidrug resistance in bacteria is an important issue and is increasing in frequency worldwide because of the limitations of therapeutic agents. From 2010 to 2019, 14 new systemic antibiotics received regulatory approval in the United States. However, few new antibiotics have been introduced in Republic of Korea to combat multidrug-resistant pathogens. Here, we introduce six novel antibiotics for Gram-positive bacteria and five for Gram-negative bacteria approved by the United States Food and Drug Administration and the European Medicines Agency from 2009 to October 2021, and recommend that they be approved for use in Republic of Korea at the earliest possible date.
    MeSH term(s) Anti-Bacterial Agents/pharmacology ; Anti-Bacterial Agents/therapeutic use ; Bacteria ; Drug Resistance, Multiple, Bacterial ; Gram-Negative Bacteria ; Humans ; Methicillin-Resistant Staphylococcus aureus ; Microbial Sensitivity Tests ; United States
    Chemical Substances Anti-Bacterial Agents
    Language English
    Publishing date 2022-02-28
    Publishing country Korea (South)
    Document type Journal Article ; Review
    ZDB-ID 639023-7
    ISSN 2005-6648 ; 1226-3303
    ISSN (online) 2005-6648
    ISSN 1226-3303
    DOI 10.3904/kjim.2021.527
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Naringin generates three types of reactive oxygen species contributing differently to apoptosis-like death in Escherichia coli.

    Han, Giyeol / Lee, Dong Gun

    Life sciences

    2022  Volume 304, Page(s) 120700

    Abstract: Aims: Naringin is a flavonoid with a polyphenolic structure which induces formation of reactive oxygen species (ROS). Although the antibacterial effect of naringin has been demonstrated, the mechanism underlying this effect has not yet been elucidated. ... ...

    Abstract Aims: Naringin is a flavonoid with a polyphenolic structure which induces formation of reactive oxygen species (ROS). Although the antibacterial effect of naringin has been demonstrated, the mechanism underlying this effect has not yet been elucidated. We focused on investigating the antibacterial mode of action of naringin in Escherichia coli following ROS generation. The contributions of ROS, hydroxy radicals (OH
    Main methods: ROS accumulation was detected using fluorescence dyes, and all experiments were conducted using the scavenger including tiron, sodium pyruvate, and thiourea to assess the contribution of each ROS. Western blotting assays were used to observe the activation of the SOS response for DNA repair. DNA fragmentation, membrane depolarization, and phosphatidylserine exposure were estimated using TUNEL, DiBAC
    Key findings: Accumulation of ROS was observed in Escherichia coli after treatment with naringin. Oxidative stress induced cellular dysfunction including DNA damage, which results in SOS response activation. Eventually, apoptosis-like death occurred in cells treated with naringin. The cells had different contributions of each ROS and accompanying apoptotic factors. The ROS most destructive to E. coli was OH
    Significance: Due to its efficacy, naringin is a useful antimicrobial agent. An initial investigation into the antibacterial mode of action of naringin is presented in this paper. The contribution of each ROS to apoptosis-like cell death (ALD) was investigated, and the results enhanced our understanding of the correlation between the SOS response and oxidative stress in bacteria.
    MeSH term(s) Anti-Bacterial Agents/pharmacology ; Apoptosis ; Escherichia coli ; Flavanones ; Hydrogen Peroxide/metabolism ; Hydrogen Peroxide/pharmacology ; Oxidative Stress ; Reactive Oxygen Species/metabolism
    Chemical Substances Anti-Bacterial Agents ; Flavanones ; Reactive Oxygen Species ; Hydrogen Peroxide (BBX060AN9V) ; naringin (N7TD9J649B)
    Language English
    Publishing date 2022-06-09
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 3378-9
    ISSN 1879-0631 ; 0024-3205
    ISSN (online) 1879-0631
    ISSN 0024-3205
    DOI 10.1016/j.lfs.2022.120700
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Book ; Online: EQUAL Scedosporiosis/Lomentosporiosis 점수 2021

    Stemler, Jannik / Lackner, Michaela / Chen, Shuang / Hoenigl, Martin / Cornely, Oliver Andreas / Lee, Raeseok / Lee, Dong-Gun / Cho, Sung-Yeon / Nho, Dunkhee

    an ECMM Score Derived From Current Guidelines to Measure QUALity of the Clinical Management of Scedosporiosis/Lomentosporiosis

    (EQUAL Scedosporiosis/Lomentosporiosis Scorecard)

    2022  

    Abstract: EQUAL Scedosporiosis/Lomentosporiosis 점수는 Scedosporiosis/Lomentosporiosi 에 대한 최상의 진료에 권장되는 요소를 평가하고 집계합니다. EQUAL 점수는 최신 가이드라인의 가장 높은 근거 수준의 권고를 반영합니다. EQUAL 점수 카드는 가이드라인 준수 여부를 평가하고, 항진균제 스튜어드십을 돕기 위한 빠른 참고 도구입니다. ...

    Institution Universitätsklinikum Köln / Klinik I für Innere Medizin
    Author's details Jannik Stemler, Michaela Lackner, Sharon Chen, Martin Hoenig, Oliver A. Cornely, Lee R, Lee DG, Cho SY, Nho D ; Uniklinik Köln, Medical University of Graz, The University of Sydney, Medizinische Universität Innsbruck, ECMM - European Confederation of Medical Mycology
    Series title EQUAL Scedosporiosis/Lomentosporiosis Scorecard
    Abstract EQUAL Scedosporiosis/Lomentosporiosis 점수는 Scedosporiosis/Lomentosporiosi 에 대한 최상의 진료에 권장되는 요소를 평가하고 집계합니다. EQUAL 점수는 최신 가이드라인의 가장 높은 근거 수준의 권고를 반영합니다. EQUAL 점수 카드는 가이드라인 준수 여부를 평가하고, 항진균제 스튜어드십을 돕기 위한 빠른 참고 도구입니다.
    Subject code 610
    Language Korean
    Size 1 Online-Ressource (2 Blätter)
    Publisher Uniklinik Köln
    Publishing place Cologne
    Publishing country Germany
    Document type Book ; Online
    HBZ-ID HT021448740
    DOI 10.4126/FRL01-006399230
    Database Repository for Life Sciences

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  9. Book ; Online: EQUAL 털곰팡이증 점수 2018

    Cornely, Oliver Andreas / Köhler, Philipp / Mellinghoff, Sibylle Christiane / Lee, Raeseok / Lee, Dong-Gun / Cho, Sung-Yeon / Nho, Dunkhee

    an ECMM score derived from current guidelines to measure QUALity of mucormycosis management

    2022  

    Abstract: EQUAL 털곰팡이증 점수는 털곰팡이증에 대한 최상의 진료에 권장되는 요소를 평가하고 집계합니다. EQUAL 점수는 최신 가이드라인의 가장 높은 근거 수준의 권고를 반영합니다. EQUAL 점수 카드는 가이드라인 준수 여부를 평가하고, 항진균제 스튜어드십을 돕기 위한 빠른 참고 도구입니다. ...

    Institution Universitätsklinikum Köln / Klinik I für Innere Medizin
    Author's details Cornely OA, Köhler P, Mellinghoff SC, Lee R, Lee DG, Cho SY, Nho D ; Uniklinik Köln, ECMM - European Confederation of Medical Mycology
    Abstract EQUAL 털곰팡이증 점수는 털곰팡이증에 대한 최상의 진료에 권장되는 요소를 평가하고 집계합니다. EQUAL 점수는 최신 가이드라인의 가장 높은 근거 수준의 권고를 반영합니다. EQUAL 점수 카드는 가이드라인 준수 여부를 평가하고, 항진균제 스튜어드십을 돕기 위한 빠른 참고 도구입니다.
    Subject code 610
    Language Korean
    Size 1 Online-Ressource (2 Blätter)
    Publisher Uniklinik Köln
    Publishing place Cologne
    Publishing country Germany
    Document type Book ; Online
    HBZ-ID HT021382323
    DOI 10.4126/FRL01-006433697
    Database Repository for Life Sciences

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  10. Book ; Online: EQUAL 칸디다 점수 2018

    Mellinghoff, Sibylle Christiane / Köhler, Philipp / Cornely, Oliver Andreas / Lee, Raeseok / Lee, Dong-Gun / Cho, Sung-Yeon / Nho, Dunkhee

    an ECMM score derived from current guidelines to measure QUALity of clinical candidemia management

    2022  

    Abstract: EQUAL 칸디다 점수는 칸디다 혈증에 대한 최상의 진료를 위해 권장되는 요소를 평가하고 집계하며, 항진균제 스튜어드십과 가이드라인 준수 여부 측정을 위한 도구를 제공합니다. 유럽 임상 미생물 및 감염병학회 4,5 그리고 미국 감염병학회 3 에서 발표한 최신 가이드라인을 검토하여 가장 높은 수준의 근거를 갖는 권고를 EQUAL 칸디다 점수의 기본 도구로 선택했습니다. ...

    Institution Universitätsklinikum Köln / Klinik I für Innere Medizin
    Author's details Mellinghoff SC, Rutz J, Köhler P, Cornely OA, Lee R, Lee DG, Cho SY, Nho D ; Uniklinik Köln, ECMM - European Confederation of Medical Mycology
    Abstract EQUAL 칸디다 점수는 칸디다 혈증에 대한 최상의 진료를 위해 권장되는 요소를 평가하고 집계하며, 항진균제 스튜어드십과 가이드라인 준수 여부 측정을 위한 도구를 제공합니다. 유럽 임상 미생물 및 감염병학회 4,5 그리고 미국 감염병학회 3 에서 발표한 최신 가이드라인을 검토하여 가장 높은 수준의 근거를 갖는 권고를 EQUAL 칸디다 점수의 기본 도구로 선택했습니다.
    Subject code 610
    Language Korean
    Size 1 Online-Ressource (2 Blätter)
    Publisher Uniklinik Köln
    Publishing place Cologne
    Publishing country Germany
    Document type Book ; Online
    HBZ-ID HT021382318
    DOI 10.4126/FRL01-006433695
    Database Repository for Life Sciences

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