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  1. Article ; Online: Database on eukaryotic symbionts of native and invasive gammarids (Crustacea, Amphipoda) in the Baltic region of Poland with information on water parameters for sampling sites

    Sarabeev, Volodimir / Ovcharenko, Mykola / Jarosiewicz, Anna / Ahmed, Abdulmalik / Sueiro, Rosa Ana / Leiro, Jose Manuel

    Data in Brief. 2023 Aug., v. 49, p. 109308

    2023  , Page(s) 109308

    Abstract: This dataset documents the diversity of eukaryotic endo- and epibiotic organisms from 612 host individuals of seven gammarid (Amphipoda) species (Gammarus pulex, Gammarus zaddachi, Gammarus roeselii, Gammarus tigrinus, Dikerogammarus villosus, ... ...

    Abstract This dataset documents the diversity of eukaryotic endo- and epibiotic organisms from 612 host individuals of seven gammarid (Amphipoda) species (Gammarus pulex, Gammarus zaddachi, Gammarus roeselii, Gammarus tigrinus, Dikerogammarus villosus, Pontogammarus robustoides, Echinogammarus ischnus) of native and invasive origin in the Baltic region of Poland. We identify 60 symbiotic species of nine phyla from 16 localities of freshwater and brackish habitats. Twenty-nine symbiotic species belonged to the Ciliophora, 12 to Apicomplexa, 8 to Microsporidia, 3 to Platyhelminthes, 2 to Acanthocephala, 2 to Nematoda, 2 to Rotifera, 1 to Choanozoa and 1 to Nematomorha. The material in this Data in Brief paper is composed of three Microsoft® Excel files. The first file represents the raw data on the number of individuals (infrapopulation size) of each eukaryotic symbiont taxa recorded in each host individual and location. The data set contains information on the assemblage of symbionts per host individual in one table-matrix; macro- (host) and symbiont taxa name, host length, the date of collection, the geographic coordinates and locality name in columns; and amphipod host specimens in lines. The second file reports the symbiont species list (the species breakdown by phyla in spreadsheets) with information on host species, sampling date, locality and geographic coordinates, infection site, obtained sequences (if the case), brief morphological characteristics and microphotographs. The third file reports measured water parameters, habitat features and host density per sample. We generate the present dataset to evaluate the richness, diversity, population and community features of symbiotic organisms in native and invasive gammarid hosts in Poland. Biological sciences: ParasitologyEnvironmental Science: Ecology; Hydrology and Water Quality
    Keywords Acanthocephala ; Choanozoa ; Ciliophora ; Dikerogammarus villosus ; Echinogammarus ischnus ; Gammarus pulex ; Gammarus roeselii ; Microsporidia ; Miozoa ; Nematoda ; Platyhelminthes ; Rotifera ; data collection ; databases ; freshwater ; habitats ; hosts ; symbionts ; water quality ; Poland ; Pomeranian region ; Gammarus zaddachi ; Gammarus tigrinus ; Pontogammarus robustoides
    Language English
    Dates of publication 2023-08
    Size p. 109308
    Publishing place Elsevier Inc.
    Document type Article ; Online
    ZDB-ID 2786545-9
    ISSN 2352-3409
    ISSN 2352-3409
    DOI 10.1016/j.dib.2023.109308
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  2. Article ; Online: Database on eukaryotic symbionts of native and invasive gammarids (Crustacea, Amphipoda) in the Baltic region of Poland with information on water parameters for sampling sites.

    Sarabeev, Volodimir / Ovcharenko, Mykola / Jarosiewicz, Anna / Ahmed, Abdulmalik / Sueiro, Rosa Ana / Leiro, Jose Manuel

    Data in brief

    2023  Volume 49, Page(s) 109308

    Abstract: This dataset documents the diversity of eukaryotic endo- and epibiotic organisms from 612 host individuals of seven gammarid (Amphipoda) species ( ...

    Abstract This dataset documents the diversity of eukaryotic endo- and epibiotic organisms from 612 host individuals of seven gammarid (Amphipoda) species (
    Language English
    Publishing date 2023-06-09
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2786545-9
    ISSN 2352-3409 ; 2352-3409
    ISSN (online) 2352-3409
    ISSN 2352-3409
    DOI 10.1016/j.dib.2023.109308
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  3. Article: A real-time quantitative PCR assay using hydrolysis probes for monitoring scuticociliate parasites in seawater

    Sueiro, Rosa A. / Lamas, Jesús / Palenzuela, Oswaldo / Gulias, Paola / Diez-Vives, Cristina / García-Ulloa, Alba / Leiro, José M.

    Aquaculture. 2022 Aug. 30, v. 557

    2022  

    Abstract: Scuticociliatosis is a serious disease that affects flatfish during culture and against which no effective control measures have yet been developed. Monitoring parasite levels in the water may be a valuable way of establishing the risk of infection and ... ...

    Abstract Scuticociliatosis is a serious disease that affects flatfish during culture and against which no effective control measures have yet been developed. Monitoring parasite levels in the water may be a valuable way of establishing the risk of infection and enabling appropriate control measures to be taken, thus representing an advance in controlling the disease. To achieve this objective, we have designed a quantitative real-time PCR (qPCR) assay using primers (f / r ITS2) and a hydrolysis probe that specifically amplify a region of the internal transcribed spacer 2 (ITS2) of the main aetiological agents of scuticociliatosis: Philasterides dicentrarchi and Miamiensis avidus. The slope (m), efficiency (E) and linearity (R²) determined from the standard curves generated are within the optimal values for qPCR. The high analytical sensitivity of the qPCR assay enables quantification of less than 120 pg of DNA per μL of reaction and detection of 1 ciliate per assay. The qPCR assay also exhibits high precision, with intra- and inter-assay coefficients of variation (CV) of respectively 0.27 and 7.57%. The protocol developed for isolating and quantifying ciliates seawater samples it has a recovery efficiency greater than 75% when the ciliate levels are between 10³ and 2 × 10³ ciliates/L and the turbidity of the water does not exceed one nephelometric turbidity unit (NTU). The real-time qPCR assay developed is a useful and appropriate tool for the specific and sensitive monitoring of scuticociliates in the water used in flatfish farms, enabling the establishment of effective prevention and control programmes.
    Keywords DNA ; Miamiensis avidus ; Pleuronectiformes ; aquaculture ; detection limit ; hydrolysis ; internal transcribed spacers ; parasites ; quantitative polymerase chain reaction ; risk ; seawater ; turbidity
    Language English
    Dates of publication 2022-0830
    Publishing place Elsevier B.V.
    Document type Article
    ZDB-ID 185380-6
    ISSN 0044-8486 ; 0044-8516
    ISSN 0044-8486 ; 0044-8516
    DOI 10.1016/j.aquaculture.2022.738303
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  4. Article ; Online: Molecular characterization and gene expression modulation of the alternative oxidase in a scuticociliate parasite by hypoxia and mitochondrial respiration inhibitors.

    Folgueira, Iría / Lamas, Jesús / Sueiro, Rosa Ana / Leiro, José Manuel

    Scientific reports

    2020  Volume 10, Issue 1, Page(s) 11880

    Abstract: Philasterides dicentrarchi is a marine benthic microaerophilic scuticociliate and an opportunistic endoparasite that can infect and cause high mortalities in cultured turbot (Scophthalmus maximus). In addition to a cytochrome pathway (CP), the ciliate ... ...

    Abstract Philasterides dicentrarchi is a marine benthic microaerophilic scuticociliate and an opportunistic endoparasite that can infect and cause high mortalities in cultured turbot (Scophthalmus maximus). In addition to a cytochrome pathway (CP), the ciliate can use a cyanide-insensitive respiratory pathway, which indicates the existence of an alternative oxidase (AOX) in the mitochondrion. Although AOX activity has been described in P. dicentrarchi, based on functional assay results, genetic evidence of the presence of AOX in the ciliate has not previously been reported. In this study, we conducted genomic and transcriptomic analysis of the ciliate and identified the AOX gene and its corresponding mRNA. The AOX gene (size 1,106 bp) contains four exons and three introns that generate an open reading frame of 915 bp and a protein with a predicted molecular weight of 35.6 kDa. The amino acid (aa) sequence of the AOX includes an import signal peptide targeting the mitochondria and the protein is associated with the inner membrane of the mitochondria. Bioinformatic analysis predicted that the peptide is a homodimeric glycoprotein, although monomeric forms may also appear under native conditions, with EXXH motifs associated with the diiron active centers. The aa sequences of the AOX of different P. dicentrarchi isolates are highly conserved and phylogenetically closely related to AOXs of other ciliate species, especially scuticociliates. AOX expression increased significantly during infection in the host and after the addition of CP inhibitors. This confirms the important physiological roles of AOX in respiration under conditions of low levels of O
    MeSH term(s) Amino Acid Sequence ; Animals ; Base Sequence ; Cell Respiration/drug effects ; Female ; Gene Expression ; Genome, Protozoan ; Genomics/methods ; Hypoxia/metabolism ; Male ; Mitochondria/drug effects ; Mitochondria/metabolism ; Mitochondria/ultrastructure ; Mitochondrial Proteins/chemistry ; Mitochondrial Proteins/genetics ; Models, Molecular ; Oligohymenophorea/classification ; Oligohymenophorea/enzymology ; Oligohymenophorea/genetics ; Oxidoreductases/chemistry ; Oxidoreductases/genetics ; Phylogeny ; Plant Proteins/chemistry ; Plant Proteins/genetics ; Protein Conformation ; Structure-Activity Relationship
    Chemical Substances Mitochondrial Proteins ; Plant Proteins ; Oxidoreductases (EC 1.-) ; alternative oxidase (EC 1.-)
    Language English
    Publishing date 2020-07-17
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-020-68791-9
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Molecular Targets Implicated in the Antiparasitic and Anti-Inflammatory Activity of the Phytochemical Curcumin in Trichomoniasis.

    Mallo, Natalia / Lamas, Jesús / Sueiro, Rosa Ana / Leiro, José Manuel

    Molecules (Basel, Switzerland)

    2020  Volume 25, Issue 22

    Abstract: Trichomoniasis, is the most prevalent non-viral sexually transmitted disease worldwide. Although metronidazole (MDZ) is the recommended treatment, several strains of the parasite are resistant to MDZ, and new treatments are required. Curcumin (CUR) is a ... ...

    Abstract Trichomoniasis, is the most prevalent non-viral sexually transmitted disease worldwide. Although metronidazole (MDZ) is the recommended treatment, several strains of the parasite are resistant to MDZ, and new treatments are required. Curcumin (CUR) is a polyphenol with anti-inflammatory, antioxidant and antiparasitic properties. In this study, we evaluated the effects of CUR on two biochemical targets: on proteolytic activity and hydrogenosomal metabolism in
    MeSH term(s) Animals ; Anti-Inflammatory Agents/pharmacology ; Anti-Inflammatory Agents/therapeutic use ; Antiparasitic Agents/pharmacology ; Antiparasitic Agents/therapeutic use ; Curcumin/pharmacology ; Curcumin/therapeutic use ; Cytokines/genetics ; Cytokines/metabolism ; Gene Expression Regulation, Enzymologic/drug effects ; Inflammation Mediators/metabolism ; Lipopolysaccharides ; Macrophages/drug effects ; Macrophages/parasitology ; Membrane Potentials/drug effects ; Mice ; Molecular Targeted Therapy ; Nitric Oxide/biosynthesis ; Parasites/drug effects ; Phytochemicals/pharmacology ; Phytochemicals/therapeutic use ; Proteolysis/drug effects ; Pyruvate Synthase/genetics ; Pyruvate Synthase/metabolism ; RAW 264.7 Cells ; RNA, Messenger/genetics ; RNA, Messenger/metabolism ; Trichomonas Infections/drug therapy ; Trichomonas Infections/parasitology ; Trichomonas vaginalis/drug effects ; Trichomonas vaginalis/enzymology ; Trichomonas vaginalis/genetics
    Chemical Substances Anti-Inflammatory Agents ; Antiparasitic Agents ; Cytokines ; Inflammation Mediators ; Lipopolysaccharides ; Phytochemicals ; RNA, Messenger ; Nitric Oxide (31C4KY9ESH) ; Pyruvate Synthase (EC 1.2.7.1) ; Curcumin (IT942ZTH98)
    Language English
    Publishing date 2020-11-14
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 1413402-0
    ISSN 1420-3049 ; 1431-5165 ; 1420-3049
    ISSN (online) 1420-3049
    ISSN 1431-5165 ; 1420-3049
    DOI 10.3390/molecules25225321
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  6. Article: Plant- and Bacteria-Derived Compounds with Anti-

    Sueiro, Rosa Ana / Leiro, José Manuel / Blanco-Abad, Verónica / Raaijmakers, Jos / de Bruijn, Irene / Dirks, Ron P H / Lamas, Jesús

    Pathogens (Basel, Switzerland)

    2022  Volume 11, Issue 2

    Abstract: Philasterides ... ...

    Abstract Philasterides dicentrarchi
    Language English
    Publishing date 2022-02-18
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2695572-6
    ISSN 2076-0817
    ISSN 2076-0817
    DOI 10.3390/pathogens11020267
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  7. Article: Plant- and Bacteria-Derived Compounds with Anti-Philasterides dicentrarchi Activity

    Sueiro, Rosa Ana / Leiro, José Manuel / Blanco-Abad, Verónica / Raaijmakers, Jos / de Bruijn, Irene / Dirks, Ron P. H. / Lamas, Jesús

    Pathogens. 2022 Feb. 18, v. 11, no. 2

    2022  

    Abstract: Philasterides dicentrarchi is a scuticociliate that causes high mortalities in farmed fish. Although vaccination is an effective method to prevent scuticociliatosis caused by the homologous serotype, a universal vaccine has not been developed yet. Many ... ...

    Abstract Philasterides dicentrarchi is a scuticociliate that causes high mortalities in farmed fish. Although vaccination is an effective method to prevent scuticociliatosis caused by the homologous serotype, a universal vaccine has not been developed yet. Many compounds have been shown to be toxic to this ciliate species; moreover, most of them are toxic to aquatic life and cannot be used to prevent the disease. We have evaluated the toxicity to P. dicentrarchi of several compounds of natural origin to be used to reduce parasite levels in the seawater. Ciliates were exposed to several compound concentrations, and the mortality was determined at several incubation times. Tomatine, plumbagin and 2′,4′-dihydroxychalcone displayed the highest anticiliate activity, with a dose-dependent response. The effects of these compounds on the EPC cell line were also evaluated, finding that 2′,4′-dihydroxychalcone displayed the lowest toxicity to fish cells. At 7.54 μM, 2′,4′-dihydroxychalcone inhibited 50% parasite growth but only killed about 10% of EPC cells after 24 h incubation. Finally, we evaluated the toxicity of Pseudomonas H6 surfactant (PS) to P. dicentrarchi, finding that PS was toxic to the ciliate but showed lower toxicity to EPC cells. At a concentration of 7.8 μg/mL (LC₅₀ for the ciliate after 3 h incubation), PS killed 14.9% of EPC cells. We conclude that 2′,4′-dihydroxychalcone, and PS could be used to reduce parasite levels in seawater, thus decreasing the risk of scuticociliatosis infection in cultured fish.
    Keywords Oligohymenophorea ; Pseudomonas ; cell lines ; dose response ; farmed fish ; mortality ; parasites ; plumbagin ; risk ; seawater ; serotypes ; surfactants ; toxicity ; vaccination ; vaccines
    Language English
    Dates of publication 2022-0218
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2695572-6
    ISSN 2076-0817
    ISSN 2076-0817
    DOI 10.3390/pathogens11020267
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  8. Article ; Online: Cold-blooded vertebrates evolved organized germinal center-like structures.

    Shibasaki, Yasuhiro / Afanasyev, Sergei / Fernández-Montero, Alvaro / Ding, Yang / Watanabe, Shota / Takizawa, Fumio / Lamas, Jesús / Fontenla-Iglesias, Francisco / Leiro, José Manuel / Krasnov, Aleksei / Boudinot, Pierre / Sunyer, J Oriol

    Science immunology

    2023  Volume 8, Issue 90, Page(s) eadf1627

    Abstract: Germinal centers (GCs) or analogous secondary lymphoid microstructures (SLMs) are thought to have evolved in endothermic species. However, living representatives of their ectothermic ancestors can mount potent secondary antibody responses upon infection ... ...

    Abstract Germinal centers (GCs) or analogous secondary lymphoid microstructures (SLMs) are thought to have evolved in endothermic species. However, living representatives of their ectothermic ancestors can mount potent secondary antibody responses upon infection or immunization, despite the apparent lack of SLMs in these cold-blooded vertebrates. How and where adaptive immune responses are induced in ectothermic species in the absence of GCs or analogous SLMs remain poorly understood. Here, we infected a teleost fish (trout) with the parasite
    MeSH term(s) Animals ; Germinal Center ; B-Lymphocytes ; Immunoglobulin M ; Antigens ; Vertebrates ; Mammals
    Chemical Substances Immunoglobulin M ; Antigens
    Language English
    Publishing date 2023-12-01
    Publishing country United States
    Document type Journal Article
    ISSN 2470-9468
    ISSN (online) 2470-9468
    DOI 10.1126/sciimmunol.adf1627
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  9. Article: Evidence for the role of extrusomes in evading attack by the host immune system in a scuticociliate parasite

    Folgueira, Iria / De Felipe, Ana Paula / Lamas, Jesús / Leiro, José Manuel / Sueiro, Rosa Ana

    Fish & shellfish immunology. 2019 Sept., v. 92

    2019  

    Abstract: Like other ciliates, Philasterides dicentrarchi, the scuticociliate parasite of turbot, produces a feeding-only or growing stage called a trophont during its life cycle. Exposure of the trophonts to heat-inactivated serum extracted from the turbot host ... ...

    Abstract Like other ciliates, Philasterides dicentrarchi, the scuticociliate parasite of turbot, produces a feeding-only or growing stage called a trophont during its life cycle. Exposure of the trophonts to heat-inactivated serum extracted from the turbot host and containing specific antibodies that induce agglutination/immobilization leads to the production of a mucoid capsule from which the trophonts later emerge. We investigated how these capsules are generated, observing that the mechanism was associated with the process of exocytosis involved in the release of a matrix material from the extrusomes. The extruded material contains mucin-like glycoproteins that were deposited on the surface of the cell and whose expression increased with time of exposure to the heat-inactivated immune serum, at both protein expression and gene expression levels. Stimulation of the trophonts with the immune serum also caused an increase in discharge of the intracellular storage compartments of calcium necessary for the exocytosis processes in the extrusomes. The results obtained suggest that P. dicentrarchi uses the extrusion mechanism to generate a physical barrier protecting the ciliate from attack by soluble factors of the host immune system. Data on the proteins involved and the potential development of molecules that interfere with this exocytic process could contribute to improving the prevention and control of scuticociliatosis in turbot.
    Keywords agglutination ; antibodies ; antiserum ; blood serum ; calcium ; exocytosis ; extrusion ; gene expression ; glycoproteins ; heat inactivation ; immune system ; Oligohymenophorea ; parasites ; protein synthesis ; turbot
    Language English
    Dates of publication 2019-09
    Size p. 802-812.
    Publishing place Elsevier Ltd
    Document type Article
    ZDB-ID 1067738-0
    ISSN 1095-9947 ; 1050-4648
    ISSN (online) 1095-9947
    ISSN 1050-4648
    DOI 10.1016/j.fsi.2019.07.008
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  10. Article: Interactions between the Parasite Philasterides dicentrarchi and the Immune System of the Turbot Scophthalmus maximus. A Transcriptomic Analysis

    Valle, Alejandra / Leiro, José Manuel / Pereiro, Patricia / Figueras, Antonio / Novoa, Beatriz / Dirks, Ron P. H / Lamas, Jesús

    Biology. 2020 Oct. 15, v. 9, no. 10

    2020  

    Abstract: The present study analyses the interactions between Philasterides dicentrarchi (a ciliate parasite that causes high mortalities in cultured flatfish) and the peritoneal cells of the turbot Scophthalmus maximus during an experimental infection. The ... ...

    Abstract The present study analyses the interactions between Philasterides dicentrarchi (a ciliate parasite that causes high mortalities in cultured flatfish) and the peritoneal cells of the turbot Scophthalmus maximus during an experimental infection. The transcriptomic response was evaluated in the parasites and in the fish peritoneal cells, at 1, 2 and 4 h post-infection (hpi) in turbot injected intraperitoneally (ip) with 10⁷ ciliates and at 12 and 48 hpi in turbot injected ip with 10⁵ ciliates. Numerous genes were differentially expressed (DE) in P. dicentrarchi, relative to their expression in control ciliates (0 hpi): 407 (369 were up-regulated) at 1 hpi, 769 (415 were up-regulated) at 2 hpi and 507 (119 were up-regulated) at 4 hpi. Gene ontology (GO) analysis of the DE genes showed that the most representative categories of biological processes affected at 1, 2 and 4 hpi were biosynthetic processes, catabolic processes, biogenesis, proteolysis and transmembrane transport. Twelve genes of the ABC transporter family and eight genes of the leishmanolysin family were DE at 1, 2 and 4 hpi. Most of these genes were strongly up-regulated (UR), suggesting that they are involved in P. dicentrarchi infection. A third group of UR genes included several genes related to ribosome biogenesis, DNA transcription and RNA translation. However, expression of tubulins and tubulin associated proteins, such as kinesins or dyneins, which play key roles in ciliate division and movement, was down-regulated (DR). Similarly, genes that coded for lysosomal proteins or that participate in the cell cycle mitotic control, glycolysis, the Krebs cycle and/or in the electron transport chain were also DR. The transcriptomic analysis also revealed that in contrast to many parasites, which passively evade the host immune system, P. dicentrarchi strongly stimulated turbot peritoneal cells. Many genes related to inflammation were DE in peritoneal cells at 1, 2 and 4 hpi. However, the response was much lower at 12 hpi and almost disappeared completely at 48 hpi in fish that were able to kill P. dicentrarchi during the first few hpi. The genes that were DE at 1, 2 and 4 hpi were mainly related to the apoptotic process, the immune response, the Fc-epsilon receptor signalling pathway, the innate immune response, cell adhesion, cell surface receptors, the NF-kappaB signalling pathway and the MAPK cascade. Expression of toll-like receptors 2, 5 and 13 and of several components of NF-κB, MAPK and JAK/STAT signalling pathways was UR in the turbot peritoneal cells. Genes expressing chemokines and chemokine receptors, genes involved in prostaglandin and leukotriene synthesis, prostaglandins, leukotriene receptors, proinflammatory cytokines and genes involved in apoptosis were strongly UR during the first four hours of infection. However, expression of anti-inflammatory cytokines such as Il-10 and lipoxygenases with anti-inflammatory activity (i.e., arachidonate 15-lipoxygenase) were only UR at 12 and/or 48 hpi, indicating an anti-inflammatory state in these groups of fish. In conclusion, the present study shows the regulation of several genes in P. dicentrarchi during the early stages of infection, some of which probably play important roles in this process. The infection induced a potent acute inflammatory response, and many inflammatory genes were regulated in peritoneal cells, showing that the turbot uses all the protective mechanisms it has available to prevent the entry of the parasite.
    Keywords ABC transporters ; Ciliophora ; DNA ; RNA ; Scophthalmus maximus ; anti-inflammatory activity ; apoptosis ; arachidonate 15-lipoxygenase ; biogenesis ; biosynthesis ; cell adhesion ; cells ; chemokine receptors ; chemokines ; dynein ATPase ; electron transport chain ; exhibitions ; gene expression regulation ; gene ontology ; genes ; glycolysis ; immune response ; immune system ; infection ; inflammation ; innate immunity ; interleukin-10 ; kinesin ; mitosis ; mortality ; parasites ; prostaglandins ; proteolysis ; ribosomes ; signal transduction ; synthesis ; transcription factor NF-kappa B ; transcriptomics ; tricarboxylic acid cycle ; tubulin ; turbot
    Language English
    Dates of publication 2020-1015
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    Note NAL-light
    ZDB-ID 2661517-4
    ISSN 2079-7737
    ISSN 2079-7737
    DOI 10.3390/biology9100337
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