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  1. AU="Lemieux, Audrée"
  2. AU="Abdelhameed, Mohamed F"
  3. AU="Schaible, Lonnie M"
  4. AU="Yazie, Taklo Simeneh Yazie"
  5. AU="Jude Orumuah Agbugui"
  6. AU="Kruse, Robert L"
  7. AU="Shyama Nandakumar"
  8. AU="Gelb, M"
  9. AU="Gasparini, L"
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  1. Article ; Online: Viral spillover risk increases with climate change in High Arctic lake sediments.

    Lemieux, Audrée / Colby, Graham A / Poulain, Alexandre J / Aris-Brosou, Stéphane

    Proceedings. Biological sciences

    2022  Volume 289, Issue 1985, Page(s) 20221073

    Abstract: The host spectrum of viruses is quite diverse, as they can sustainedly infect a few species to several phyla. When confronted with a new host, a virus may even infect it and transmit sustainably in this new host, a process called 'viral spillover'. ... ...

    Abstract The host spectrum of viruses is quite diverse, as they can sustainedly infect a few species to several phyla. When confronted with a new host, a virus may even infect it and transmit sustainably in this new host, a process called 'viral spillover'. However, the risk of such events is difficult to quantify. As climate change is rapidly transforming environments, it is becoming critical to quantify the potential for spillovers. To address this issue, we resorted to a metagenomics approach and focused on two environments, soil and lake sediments from Lake Hazen, the largest High Arctic freshwater lake in the world. We used DNA and RNA sequencing to reconstruct the lake's virosphere in both its sediments and soils, as well as its range of eukaryotic hosts. We then estimated the spillover risk by measuring the congruence between the viral and the eukaryotic host phylogenetic trees, and show that spillover risk increases with runoff from glacier melt, a proxy for climate change. Should climate change also shift species range of potential viral vectors and reservoirs northwards, the High Arctic could become fertile ground for emerging pandemics.
    MeSH term(s) Lakes ; Climate Change ; Phylogeny ; Arctic Regions ; Viruses/genetics ; Soil
    Chemical Substances Soil
    Language English
    Publishing date 2022-10-19
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 209242-6
    ISSN 1471-2954 ; 0080-4649 ; 0962-8452 ; 0950-1193
    ISSN (online) 1471-2954
    ISSN 0080-4649 ; 0962-8452 ; 0950-1193
    DOI 10.1098/rspb.2022.1073
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Enhanced detection of antigen-specific T cells by a multiplexed AIM assay.

    Lemieux, Audrée / Sannier, Gérémy / Nicolas, Alexandre / Nayrac, Manon / Delgado, Gloria-Gabrielle / Cloutier, Rose / Brassard, Nathalie / Laporte, Mélanie / Duchesne, Mélina / Sreng Flores, Alina Maria / Finzi, Andrés / Tastet, Olivier / Dubé, Mathieu / Kaufmann, Daniel E

    Cell reports methods

    2024  Volume 4, Issue 1, Page(s) 100690

    Abstract: Broadly applicable methods to identify and characterize antigen-specific ... ...

    Abstract Broadly applicable methods to identify and characterize antigen-specific CD4
    MeSH term(s) CD8-Positive T-Lymphocytes ; CD4-Positive T-Lymphocytes ; Tumor Necrosis Factor Receptor Superfamily, Member 9 ; Antigens/metabolism ; Cytomegalovirus
    Chemical Substances Tumor Necrosis Factor Receptor Superfamily, Member 9 ; Antigens
    Language English
    Publishing date 2024-01-15
    Publishing country United States
    Document type Journal Article
    ISSN 2667-2375
    ISSN (online) 2667-2375
    DOI 10.1016/j.crmeth.2023.100690
    Database MEDical Literature Analysis and Retrieval System OnLINE

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