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  1. Book ; Online: A Themed Issue in Memory of Academician Zhu Yingguo (1939-2017)

    Zhu, Yuxian / Li, Shaoqing / He, Guangcun

    2023  

    Keywords Medical ethics & professional conduct ; rice ; white-core rate ; fine-mapping ; quantitative RT-PCR ; yield ; and quality ; brown planthopper ; gene mapping ; near isogenic line ; marker-assisted selection ; RNA-Seq ; n/a ; transposon ; rice genome ; centromere ; divergence ; Gaussian distribution ; genome-wide analysis ; gibberellin ; GAox ; rice (Oryza sativa) ; effective panicle numbers ; tiller numbers ; QTL analysis ; heterosis-related loci ; heading date ; Heading date 8 (OsHd8) ; promoter ; natural variation ; temperature ; solar radiation ; sowing date ; growth duration ; lodging resistance ; lodging index ; lodging-related traits ; indica rice ; rice establishment method ; orderly mechanical seedling throwing ; manual seedling throwing ; manual transplanting ; hybrid sterility ; wide compatibility ; leaf-color mutants ; chlorophyll ; ygl9311 ; OsChlC1 ; Mg-chelatase ; OsChlI subunit
    Language English
    Size 1 electronic resource (152 pages)
    Publisher MDPI - Multidisciplinary Digital Publishing Institute
    Publishing place Basel
    Document type Book ; Online
    Note English
    HBZ-ID HT030645587
    ISBN 9783036592916 ; 3036592911
    Database ZB MED Catalogue: Medicine, Health, Nutrition, Environment, Agriculture

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  2. Article ; Online: GROWTH REGULATING FACTOR 7-mediated arbutin metabolism enhances rice salt tolerance.

    Chen, Yunping / Dan, Zhiwu / Li, Shaoqing

    The Plant cell

    2024  

    Abstract: Salt stress is an environmental factor that limits plant growth and crop production. With the rapid expansion of salinized arable land worldwide, investigating the molecular mechanisms underlying the salt stress response in plants is urgently needed. ... ...

    Abstract Salt stress is an environmental factor that limits plant growth and crop production. With the rapid expansion of salinized arable land worldwide, investigating the molecular mechanisms underlying the salt stress response in plants is urgently needed. Here, we report that GROWTH REGULATING FACTOR 7 (OsGRF7) promotes salt tolerance by regulating arbutin (hydroquinone-β-D-glucopyranoside) metabolism in rice (Oryza sativa). Overexpression of OsGRF7 increased arbutin content, and exogenous arbutin application rescued the salt-sensitive phenotype of OsGRF7 knockdown and knockout plants. OsGRF7 directly promoted the expression of the arbutin biosynthesis genes URIDINE DIPHOSPHATE GLYCOSYLTRANSFERASE 1 (OsUGT1) and OsUGT5, and knockout of OsUGT1 or OsUGT5 reduced rice arbutin content, salt tolerance, and grain size. Furthermore, OsGRF7 degradation through its interaction with F-BOX AND OTHER DOMAINS CONTAINING PROTEIN 13 (OsFBO13) reduced rice salinity tolerance and grain size. These findings highlight an underexplored role of OsGRF7 in modulating rice arbutin metabolism, salt stress response, and grain size, as well as its broad potential use in rice breeding.
    Language English
    Publishing date 2024-05-03
    Publishing country England
    Document type Journal Article
    ZDB-ID 623171-8
    ISSN 1532-298X ; 1040-4651
    ISSN (online) 1532-298X
    ISSN 1040-4651
    DOI 10.1093/plcell/koae140
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Rice Genomics Research, Gene Mining and Utilization: A Themed Issue Dedicated to Academician/Prof. Yingguo Zhu

    He, Guangcun / Li, Shaoqing / Zhu, Yuxian

    Agronomy. 2023 Mar. 30, v. 13, no. 4

    2023  

    Abstract: We are honored and privileged to edit this Special Issue, “Rice Genomics Research, Gene Mining and Utilization: A Themed Issue Dedicated to Academician Yingguo Zhu” [ ... ] ...

    Abstract We are honored and privileged to edit this Special Issue, “Rice Genomics Research, Gene Mining and Utilization: A Themed Issue Dedicated to Academician Yingguo Zhu” [...]
    Keywords agronomy ; genes ; genomics
    Language English
    Dates of publication 2023-0330
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article ; Online
    ZDB-ID 2607043-1
    ISSN 2073-4395
    ISSN 2073-4395
    DOI 10.3390/agronomy13041015
    Database NAL-Catalogue (AGRICOLA)

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  4. Article ; Online: Early efficacy observation of the unilateral biportal endoscopic technique in the treatment of multi-level lumbar spinal stenosis.

    Jia, Dingding / Qiao, Xin / Wang, Xuepan / Li, Shaoqing / Li, Qiang / Hao, Yunbing / Peng, Xiangping

    Journal of orthopaedic surgery and research

    2024  Volume 19, Issue 1, Page(s) 117

    Abstract: Background: To explore the early curative effect of unilateral biportal endoscopy (UBE) in the treatment of multi-level lumbar spinal stenosis with the help of multiple small incisions.: Methods: A retrospective analysis was performed on 26 patients ... ...

    Abstract Background: To explore the early curative effect of unilateral biportal endoscopy (UBE) in the treatment of multi-level lumbar spinal stenosis with the help of multiple small incisions.
    Methods: A retrospective analysis was performed on 26 patients with multi-level lumbar spinal stenosis treated by UBE in our hospital from August 1, 2021, to March 1, 2022. We collect patients' basic medical records and independently design surgical incisions. The visual analog score (VAS) and Oswestry Disability Index (ODI) were compared before surgery, 7 days after surgery and 6 months after surgery. Spinal canal diameters on CT were compared before surgery and 7 days after surgery. The modified MacNab standard was used to evaluate the efficacy satisfaction at 6 months after operation.
    Results: In this study, 26 patients were operated according to the predetermined surgical plan. The operative time was 145 ± 40.11 min, the intraoperative blood loss was 156.25 ± 44.32 ml, and the postoperative hospital stay was 4.79 ± 1.31 days. The VAS scores of postoperative lumbago and leg pain were lower than those before surgery (P < 0.05). The postoperative ODI score was significantly different from that before surgery (P < 0.05). The postoperative CT sagittal diameter was significantly different from that before surgery (P < 0.05). The curative effect of modified MacNab was 76.92% when followed up 7 days after surgery. The curative effect of modified MacNab was 92.31% when followed up 6 months after surgery, which was significantly improved compared with 7 days after surgery.
    Conclusion: Under multiple small incision channels, UBE can effectively treat multi-level lumbar spinal stenosis, significantly relieve the clinical symptoms of patients, and significantly improve the quality of life of patients. It is a safe and feasible minimally invasive surgical treatment method for multi-level lumbar spinal stenosis.
    MeSH term(s) Humans ; Spinal Stenosis/diagnostic imaging ; Spinal Stenosis/surgery ; Retrospective Studies ; Quality of Life ; Lumbar Vertebrae/diagnostic imaging ; Lumbar Vertebrae/surgery ; Endoscopy/methods ; Treatment Outcome
    Language English
    Publishing date 2024-02-03
    Publishing country England
    Document type Journal Article
    ZDB-ID 2252548-8
    ISSN 1749-799X ; 1749-799X
    ISSN (online) 1749-799X
    ISSN 1749-799X
    DOI 10.1186/s13018-024-04575-5
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Comprehensive identification and analysis of DUF640 genes associated with rice growth.

    Wang, Zhikai / Wang, Ruihua / Yuan, Huanran / Fan, Fengfeng / Li, Shaoqing / Cheng, Mingxing / Tian, Zhihong

    Gene

    2024  Volume 914, Page(s) 148404

    Abstract: Protein domains with conserved amino acid sequences and uncharacterized functions are called domains of unknown function (DUF). The DUF640 gene family plays a crucial role in plant growth, particularly in light regulation, floral organ development, and ... ...

    Abstract Protein domains with conserved amino acid sequences and uncharacterized functions are called domains of unknown function (DUF). The DUF640 gene family plays a crucial role in plant growth, particularly in light regulation, floral organ development, and fruit development. However, there exists a lack of systematic understanding of the evolutionary relationships and functional differentiation of DUF640 within the Oryza genus. In this study, 61 DUF640 genes were identified in the Oryza genus. The expression of DUF640s is induced by multiple hormonal stressors including abscisic acid (ABA), cytokinin (CK), ethylene (ETH), and indole-3-acetic acid (IAA). Specifically, OiDUF640-10 expression significantly increased after ETH treatment. Transgenic experiments showed that overexpressing OiDUF640-10 lines were sensitive to ETH, and seedling length was obstructed. Evolutionary analysis revealed differentiation of the OiDUF640-10 gene in O. sativa ssp. indica and japonica varieties, likely driven by natural selection during the domestication of cultivated rice. These results indicate that OiDUF640-10 plays a vital role in the regulation of rice seedling length.
    MeSH term(s) Oryza/genetics ; Oryza/growth & development ; Gene Expression Regulation, Plant ; Plant Proteins/genetics ; Plant Proteins/metabolism ; Phylogeny ; Plant Growth Regulators/metabolism ; Plants, Genetically Modified/genetics ; Evolution, Molecular ; Indoleacetic Acids/metabolism ; Genes, Plant ; Seedlings/genetics ; Seedlings/growth & development ; Abscisic Acid/metabolism ; Abscisic Acid/pharmacology ; Ethylenes/metabolism
    Chemical Substances Plant Proteins ; Plant Growth Regulators ; Indoleacetic Acids ; Abscisic Acid (72S9A8J5GW) ; Ethylenes ; indoleacetic acid (6U1S09C61L)
    Language English
    Publishing date 2024-03-21
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 391792-7
    ISSN 1879-0038 ; 0378-1119
    ISSN (online) 1879-0038
    ISSN 0378-1119
    DOI 10.1016/j.gene.2024.148404
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Preparation of carbon-coated Fe

    Li, Shaoqing / Ye, Yong / Liu, Xiang / Yang, Xuerui / Fang, Shan / Zhou, Naigen

    Chemistry (Weinheim an der Bergstrasse, Germany)

    2024  Volume 30, Issue 10, Page(s) e202302768

    Abstract: ... ...

    Abstract Fe
    Language English
    Publishing date 2024-01-03
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 1478547-X
    ISSN 1521-3765 ; 0947-6539
    ISSN (online) 1521-3765
    ISSN 0947-6539
    DOI 10.1002/chem.202302768
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Predicting surgical outcome and sagittal alignment change in patients with cervical spondylosis and degenerative kyphosis after anterior cervical discectomy and fusion.

    Li, Shaoqing / Bai, Bingqing / Li, Qiang / Yuan, Qian / Peng, Xiangping

    Scientific reports

    2023  Volume 13, Issue 1, Page(s) 6704

    Abstract: The aim of this study was to forecast the risk factors of poor outcomes and postoperative loss of lordosis or recurrence of kyphosis. In this retrospective study, 101 patients with cervical spondylosis and preoperative kyphosis who underwent anterior ... ...

    Abstract The aim of this study was to forecast the risk factors of poor outcomes and postoperative loss of lordosis or recurrence of kyphosis. In this retrospective study, 101 patients with cervical spondylosis and preoperative kyphosis who underwent anterior cervical discectomy and fusion (ACDF) were enrolled, between June 2015 and June 2019. Patients were grouped according to the recovery rate of Japanese Orthopaedic Association (JOA) score whether more than 50%, and the change of postoperative cervical Cobb angle. There were 22 cases with less than 50% of recovery rate and 35 cases with the worsening of postoperative sagittal alignment (WPSA). Multivariate linear-regression analysis was conducted with the data. Advanced age (p = 0.019), longer duration of symptoms (p = 0.003) and loss of local Cobb angle (LCA) after surgery (p = 0.031) was significantly associated with a poor clinical outcome. A whole kyphosis (p = 0.009), aggravated neck pain after surgery (p = 0.012), preoperative lower thoracic 1 (T1) (p < 0.001), bigger change of C2-7 sagittal vertical axis (SVA) (p = 0.008) and adjacent segment degeneration (ASD) (p = 0.024) was significantly associated with the WPSA. Preoperative health education, nutritional support and early postoperative rehabilitation intervention, in perioperative period, were recommended for patients with advance age, longer duration of symptoms, whole cervical kyphosis and lower T1. Postoperative sagittal malalignment was related to neck pain and ASD after surgery.
    MeSH term(s) Humans ; Retrospective Studies ; Neck Pain/surgery ; Diskectomy/adverse effects ; Spondylosis/surgery ; Kyphosis/diagnostic imaging ; Kyphosis/etiology ; Kyphosis/surgery ; Treatment Outcome ; Cervical Vertebrae/diagnostic imaging ; Cervical Vertebrae/surgery ; Spinal Fusion/adverse effects
    Language English
    Publishing date 2023-04-25
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-023-34029-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Measuring Endogenous GA and IAA.

    Chen, Yunping / Dan, Zhiwu / Li, Shaoqing

    Bio-protocol

    2022  Volume 12, Issue 4, Page(s) e4332

    Abstract: Plant hormones regulate many physiological processes that largely influence growth, differentiation, and development. Contents of phytohormones were analyzed using a liquid chromatography-electrospray ionization-tandem mass spectrometry (LC-ESI-MS/MS) ... ...

    Abstract Plant hormones regulate many physiological processes that largely influence growth, differentiation, and development. Contents of phytohormones were analyzed using a liquid chromatography-electrospray ionization-tandem mass spectrometry (LC-ESI-MS/MS) system. This protocol describes a detailed procedure to extract and quantify indole-3-acetic acid (IAA) and gibberellin acid (GA) in rice (
    Language English
    Publishing date 2022-02-20
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2833269-6
    ISSN 2331-8325 ; 2331-8325
    ISSN (online) 2331-8325
    ISSN 2331-8325
    DOI 10.21769/BioProtoc.4332
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Variation in Rice Plastid Genomes in Wide Crossing Reveals Dynamic Nucleo–Cytoplasmic Interaction

    Yang, Weilong / Zou, Jianing / Wang, Jiajia / Li, Nengwu / Luo, Xiaoyun / Jiang, Xiaofen / Li, Shaoqing

    Genes (Basel). 2023 July 08, v. 14, no. 7

    2023  

    Abstract: Plastid genomes (plastomes) of angiosperms are well known for their relative stability in size, structure, and gene content. However, little is known about their heredity and variations in wide crossing. To such an end, the plastomes of five ... ...

    Abstract Plastid genomes (plastomes) of angiosperms are well known for their relative stability in size, structure, and gene content. However, little is known about their heredity and variations in wide crossing. To such an end, the plastomes of five representative rice backcross inbred lines (BILs) developed from crosses of O. glaberrima/O. sativa were analyzed. We found that the size of all plastomes was about 134,580 bp, with a quadripartite structure that included a pair of inverted repeat (IR) regions, a small single-copy (SSC) region and a large single-copy (LSC) region. They contained 76 protein genes, 4 rRNA genes, and 30 tRNA genes. Although their size, structure, and gene content were stable, repeat-mediated recombination, gene expression, and RNA editing were extensively changed between the maternal line and the BILs. These novel discoveries demonstrate that wide crossing causes not only nuclear genomic recombination, but also plastome variation in plants, and that the plastome plays a critical role in coordinating the nuclear–cytoplasmic interaction.
    Keywords RNA ; backcrossing ; gene expression ; genes ; genomics ; inheritance (genetics) ; plastid genome ; rice
    Language English
    Dates of publication 2023-0708
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article ; Online
    ZDB-ID 2527218-4
    ISSN 2073-4425
    ISSN 2073-4425
    DOI 10.3390/genes14071411
    Database NAL-Catalogue (AGRICOLA)

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  10. Article ; Online: First Report of Anthracnose Caused by Colletotrichum siamense on Pachira glabra in China

    Wu, Qingtao / Xiao, Zuying / Tian, Jihong / Li, Shaoqing / Peng, Xixu / Wang, Haihua

    Plant Disease. 2023 Feb. 01, v. 107, no. 2 p.572-

    2023  

    Abstract: Pachira glabra Pasq. is an important landscape tree in southern China due to its ornamental value. Between March and April 2021, anthracnose-like symptoms on P. glabra leaves were found in the botanical garden (27.904°N, 112.918°E) of Hunan University of ...

    Abstract Pachira glabra Pasq. is an important landscape tree in southern China due to its ornamental value. Between March and April 2021, anthracnose-like symptoms on P. glabra leaves were found in the botanical garden (27.904°N, 112.918°E) of Hunan University of Science and Technology in Xiangtan, Hunan Province. Over 700 plants were evaluated, and up to 30% of the plants were symptomatic. On each plant, approximately 22% leaves had symptoms. Disease severity was estimated to be 15.6 ± 6.1% (n = 100) in moderately diseased plants. Initially, subcircular or irregular shaped, water-soaked spots with pale green to yellow centers appeared mostly along leaf margins. Later, these spots turned light brown to dark brown with black borders, gradually enlarged, and often coalesced into large, sunken, necrotic areas, leading to early leaf death and abscission. Thirty lesions (2 × 2 mm) collected from 10 trees were sterilized in 75% ethanol for 10 s, 2% sodium hypochlorite for 30 s, rinsed in sterile water three times, placed on potato dextrose agar (PDA) with lactic acid (3 ml/liter), and incubated at 28°C for 5 days. After incubation, six isolates with a similar morphology were obtained by single sporing. Colonies on PDA were white and with age produced a light brown pigmentation on the underside of the colony. Acervuli were present in aged cultures, brown to black, circular to subcircular and 31.9 to 108.7 μm (71.4 ± 6.2 μm, n = 30). Conidia were single celled, transparent, smooth, fusiform to cylindrical with obtuse to slightly rounded ends, and 7.8 to 11.1 × 2.5 to 3.1 μm (9.3 ± 1.0 × 2.9 ± 0.7 μm, n = 100). For further molecular identification, the internal transcribed spacer (ITS), actin (ACT), glyceraldehyde-3-phosphate (GAPDH), calmodulin (CAL), and beta-tubulin (TUB2) genes of the isolates were amplified from genomic DNA using primers ITS1/ITS4 (Mills et al. 1992), GDF/GDR (Cannon et al. 2012), ACT-512F/ACT-783R, CL1CF/CL2CR (Weir et al. 2012), and T1F/T22R (O’Donnell and Cigelnik 1997), respectively. Sequences of ITS (accession no. OM074029), ACT (OM190777), GAPDH (OM190778), CAL (ON210110), and TUB2 (ON210109) from CS-1 showed >98% identity where sequences overlapped to the reference strain of Colletotrichum siamense CBS 130420 (JX010259.1, JX009549.1, JX009974.1, JX009713.1, and JX010415.1). Concatenated sequences were used for a phylogenetic analysis based on maximum likelihood using MEGA-X. Based on morphological and molecular data, isolate CS-1 was identified as C. siamense (Cannon et al. 2012). Pathogenicity tests were performed three times on healthy leaves using isolate CS1. Ten leaves on 1-year-old plants were either slightly wounded by a sterile needle or unwounded and inoculated with 10 µl of conidial suspension (1 × 10⁶ conidia/ml, containing 0.05% Tween 20) per wound. The control plants were treated with sterile water. All plants were kept in a greenhouse for 24 h at 28°C and 80% relative humidity, with a 12-h photoperiod, and then transferred to natural conditions. All wounded, inoculated leaves developed leaf spot symptoms after 14 days similar to those observed in the field, whereas no visible symptoms appeared on the intact and noninoculated leaves. C. siamense strains were reisolated from all symptomatic leaves, fulfilling Koch’s postulates. C. siamense has been reported as a causal agent of anthracnose associated with diverse species (Tang et al. 2021; Udayanga et al. 2013), but not including P. glabra. To our knowledge, this is the first report of C. siamense causing anthracnose on P. glabra.
    Keywords Colletotrichum ; DNA ; Pachira glabra ; abscission ; actin ; anthracnose ; botanical gardens ; calmodulin ; conidia ; culture media ; death ; disease severity ; ethanol ; glyceraldehyde 3-phosphate ; greenhouses ; internal transcribed spacers ; lactic acid ; leaf spot ; leaves ; ornamental plants ; ornamental value ; pathogenicity ; phylogeny ; pigmentation ; polysorbates ; relative humidity ; sodium hypochlorite ; statistical analysis ; tubulin ; China ; Colletotrichum siamense ; identification of pathogen ; Pachira glabra Pasq.
    Language English
    Dates of publication 2023-0201
    Publishing place The American Phytopathological Society
    Document type Article ; Online
    ZDB-ID 754182-x
    ISSN 0191-2917
    ISSN 0191-2917
    DOI 10.1094/PDIS-05-22-1162-PDN
    Database NAL-Catalogue (AGRICOLA)

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