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  1. Article ; Online: Editorial

    Chenxi Cao / Shuang Chen / Libo Wang / Zaoqu Liu / Xinwei Han

    Frontiers in Molecular Biosciences, Vol

    Using multi-omics to develop new strategies to improve prognosis and immunotherapy outcomes in cancers

    2023  Volume 10

    Keywords multi-omics ; immunotherapy ; prognostic signature ; molecular subtype ; biomarker ; Biology (General) ; QH301-705.5
    Language English
    Publishing date 2023-06-01T00:00:00Z
    Publisher Frontiers Media S.A.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article ; Online: Land cover classification from remote sensing images based on multi-scale fully convolutional network

    Rui Li / Shunyi Zheng / Chenxi Duan / Libo Wang / Ce Zhang

    Geo-spatial Information Science, Vol 0, Iss 0, Pp 1-

    2022  Volume 17

    Abstract: Although the Convolutional Neural Network (CNN) has shown great potential for land cover classification, the frequently used single-scale convolution kernel limits the scope of information extraction. Therefore, we propose a Multi-Scale Fully ... ...

    Abstract Although the Convolutional Neural Network (CNN) has shown great potential for land cover classification, the frequently used single-scale convolution kernel limits the scope of information extraction. Therefore, we propose a Multi-Scale Fully Convolutional Network (MSFCN) with a multi-scale convolutional kernel as well as a Channel Attention Block (CAB) and a Global Pooling Module (GPM) in this paper to exploit discriminative representations from two-dimensional (2D) satellite images. Meanwhile, to explore the ability of the proposed MSFCN for spatio-temporal images, we expand our MSFCN to three-dimension using three-dimensional (3D) CNN, capable of harnessing each land cover category’s time series interaction from the reshaped spatio-temporal remote sensing images. To verify the effectiveness of the proposed MSFCN, we conduct experiments on two spatial datasets and two spatio-temporal datasets. The proposed MSFCN achieves 60.366% on the WHDLD dataset and 75.127% on the GID dataset in terms of mIoU index while the figures for two spatio-temporal datasets are 87.753% and 77.156%. Extensive comparative experiments and ablation studies demonstrate the effectiveness of the proposed MSFCN. Code will be available at https://github.com/lironui/MSFCN.
    Keywords spatio-temporal remote sensing images ; multi-scale fully convolutional network ; land cover classification ; Mathematical geography. Cartography ; GA1-1776 ; Geodesy ; QB275-343
    Subject code 006
    Language English
    Publishing date 2022-01-01T00:00:00Z
    Publisher Taylor & Francis Group
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: Effects of Reducing the South and Reinforcing the North Method on Inflammatory Injury Induced by Hyperlipidemia

    Hongjin Wu / Weiwei Dai / Libo Wang / Jie Zhang / Chenglong Wang

    Evidence-Based Complementary and Alternative Medicine, Vol

    2021  Volume 2021

    Abstract: Inflammation is the pathophysiological basis of hyperlipidemia-related disease (HRD). Reducing the south and reinforcing the north method (RSRN) has a positive effect on HRD. However, the pharmacological mechanisms of RSRN are still unclear in the ... ...

    Abstract Inflammation is the pathophysiological basis of hyperlipidemia-related disease (HRD). Reducing the south and reinforcing the north method (RSRN) has a positive effect on HRD. However, the pharmacological mechanisms of RSRN are still unclear in the treatment of HRD. We obtained RSRN compounds from the Traditional Chinese Medicine Systems Pharmacology (TCMSP) and identified potential targets of these compounds through target fishing based on the TCMSP databases. Next, we identified the HRD targets by using multiple databases. Then, the overlapping genes between the RSRN potential targets and the HRD targets were used to establish a protein-protein interaction (PPI) network, and we further analyzed their interactions and identified the major hub genes in this network. Subsequently, the Metascape database was utilized to conduct the enrichment of Gene Ontology biological processes (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. A total of 187 potential active components and 106 related core targets were obtained and identified overall. Then after the Metascape enrichment analysis, a total of 148 KEGG pathways were screened, which were mainly associated with AGE-RAGE signaling pathway, PI3K-Akt signaling pathway, TNF signaling pathway, and NF-kappa B signaling pathway. Furthermore, 34 hub genes, such as AKT1, NF-κBp65(RELA), IκBα(CHUK), MAPK8, and MAPK14, CCND1, were considered potential therapeutic targets. Furthermore, evaluations of protein levels of NF-κBp65, IκBα, TNF-α, IL-1 ß, and IL-6 were performed for experimental validation. RSRN can reduce the expression of NF-κBp65 protein, increase the level of IκBα protein, and reduce the protein levels of TNF-α, IL-1β, and IL-6 in ovariectomized rats. The results indicate that the mechanism of RSRN against inflammation may be related to AKT1, NF-κBp65, IκBα, MAPK8, and MAPK14, as well as TNF, NF-kappa B, PI3K-Akt signaling pathways.
    Keywords Other systems of medicine ; RZ201-999
    Subject code 572
    Language English
    Publishing date 2021-01-01T00:00:00Z
    Publisher Hindawi Limited
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article ; Online: Multiple Mating of Aphelinus asychis Enhance the Number of Female Progeny but Shorten the Longevity

    Shengyin Wang / Libo Wang / Jiawen Liu / Dayu Zhang / Tongxian Liu

    Insects, Vol 12, Iss 823, p

    2021  Volume 823

    Abstract: The Aphelinus asychis female adult is an important arrhenotocous parthenogenesis parasitoid of Myzus persicae , and its reproductive mode is beneficial for the population continuation of A. asychis by way of multiple mating and backcross. To explore the ... ...

    Abstract The Aphelinus asychis female adult is an important arrhenotocous parthenogenesis parasitoid of Myzus persicae , and its reproductive mode is beneficial for the population continuation of A. asychis by way of multiple mating and backcross. To explore the effect of mating on the population fitness and control efficiency of A. asychis , its mating frequency and backcross were observed under laboratory conditions. The results showed that most matings in A. asychis involved four distinct stages: courtship, pre-copulatory, copulation, and post-copulatory behaviours. Only the duration of courtship increased significantly with an increase in copulation frequency for females, and the courtship duration of A. asychis females mated with different males were significantly shorter than those mated with the same male at the same mating times, which suggested that A. asychis females might prefer to mate with different males to enrich the genotype of their offspring. The total number of mummified aphids and the female and male longevity decreased significantly with an increase in mating frequency. On the contrary, female progenies increased significantly with an increase of mating frequency, suggesting that sperm limitation might occur in females when they only mated once. These results imply that females might prefer to receive more sperm by mating multiple times in their life span. In addition, we found that the intrinsic rate of increase ( r ) of A. asychis of the control group (0.2858 d −1 ) was significantly greater than that in the backcross treatment (0.2687 d −1 ). The finite killing rate ( θ ) of A. asychis of the control group was similar to that in the backcross treatment, which showed that this treatment had a negligible negative effect on the control efficiency of A. asychis . In conclusion, the results showed that multiple mating increased the number and proportion of A. asychis female progenies but shortened the longevity of female and male adults, while the negative effect of backcross on the control efficiency ...
    Keywords biological control ; green peach aphid ; mating behaviour ; backcross ; control efficiency ; Science ; Q
    Subject code 590
    Language English
    Publishing date 2021-09-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article ; Online: Antitampering Scheme of Evidence Transfer Information in Judicial System Based on Blockchain

    Jingjing Guo / Xuliang Wei / Yuling Zhang / Jianfeng Ma / Huamin Gao / Libo Wang / Zhiquan Liu

    Security and Communication Networks, Vol

    2022  Volume 2022

    Abstract: In the process of handling criminal cases, it is crucial to avoid evidence tampering and ensure the integrity, consistency, and nonrepudiation of evidence transfer records, which is highly related to the fairness and credibility of the judiciary. To ... ...

    Abstract In the process of handling criminal cases, it is crucial to avoid evidence tampering and ensure the integrity, consistency, and nonrepudiation of evidence transfer records, which is highly related to the fairness and credibility of the judiciary. To address this problem, we propose a consortium blockchain network to record evidence transfer events among different departments of China's judicial system. We design the format of a transaction and a block. In addition, the smart contracts for three types of transactions are also proposed. The Raft consensus algorithm is adopted to accomplish the consensus process. A security analysis shows that the proposed scheme can achieve the design goal (the integrity, consistency, and nonrepudiation of evidence transfer records stored in blockchain). Furthermore, a set of experiments were conducted to analyse the performance of the proposed scheme. The experiments results show that the throughput of the system is proportional to the send rate within a certain threshold. The latency decreases with increasing send rate if the send rate is within a certain threshold. Peer nodes in the system consume the most storage and communication cost. The values of block size and block generation interval time have a slight influence on the performance of the system.
    Keywords Technology (General) ; T1-995 ; Science (General) ; Q1-390
    Language English
    Publishing date 2022-01-01T00:00:00Z
    Publisher Hindawi-Wiley
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: HDAC3 Inhibition Alleviates High-Glucose-Induced Retinal Ganglion Cell Death through Inhibiting Inflammasome Activation

    Dongyi Yu / Qing Tang / Lili Liu / Dawei He / Libo Wang / Xin Zhou

    BioMed Research International, Vol

    2022  Volume 2022

    Abstract: Purpose. The exact effects of histone deacetylase 3 (HDAC3) inhibition in DR related retinal ganglion cells (RGCs) death remained unclear. This study is aimed at detecting the influence of HDAC3 on the high-glucose-induced retinal ganglion cell death. ... ...

    Abstract Purpose. The exact effects of histone deacetylase 3 (HDAC3) inhibition in DR related retinal ganglion cells (RGCs) death remained unclear. This study is aimed at detecting the influence of HDAC3 on the high-glucose-induced retinal ganglion cell death. Methods. The retinal HDAC3 expression in DR of different time points was analyzed by immunohistochemical assay and western blot. Besides, the expression of HDAC3 and both retinal thickness and RGC loss were analyzed. The effects of HDAC3 inhibitor on cell viability, oxidative stress, and apoptosis in high-glucose- (HG-) treated RGCs were analyzed. Both inflammatory and antioxidative factors were detected by ELISA. Results. Advanced effects of HDAC3 inhibition on the expression of NLRP3 inflammasome were detected using western blots. High HDAC3 expression was detected only in the late DR mice (4 months of diabetes duration) but not early DR mice (2 months of diabetes duration). The immunohistochemical assay showed that HDAC3 expression was correlated with both retinal thickness and RCG contents. HDAC3 inhibitor significantly protected the HG-treated RGCs from damaged cell viability, severe apoptosis, and oxidative stress. Advanced pathway analyses showed that HDAC3 inhibition inactivated NLRP3 inflammasome and thus alleviated retinal inflammation. Conclusion. In conclusion, HDAC3 was involved in RGC loss and thus promoted the progression of neurodegeneration of DR. Besides, HDAC3 inhibitor demonstrated protective effects in neurodegeneration in DR through downregulation of NLRP3 activity. The effects of HDAC3 inhibitor in DR management should be confirmed in clinical trials.
    Keywords Medicine ; R
    Language English
    Publishing date 2022-01-01T00:00:00Z
    Publisher Hindawi Limited
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Article ; Online: Viral load kinetics of the severe acute respiratory syndrome coronavirus 2 Omicron variant in children aged 0 to 3 years and their parents

    Jianguo Zhou / Yanming Lu / Libo Wang / Hui Yu / Ting Zhang / Yiwei Chen / Wenhao Zhou / Jing Ni

    Chinese Medical Journal, Vol 136, Iss 21, Pp 2632-

    2023  Volume 2634

    Keywords Medicine ; R
    Language English
    Publishing date 2023-11-01T00:00:00Z
    Publisher Wolters Kluwer
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Article ; Online: Immunosenescence

    Zaoqu Liu / Qimeng Liang / Yuqing Ren / Chunguang Guo / Xiaoyong Ge / Libo Wang / Quan Cheng / Peng Luo / Yi Zhang / Xinwei Han

    Signal Transduction and Targeted Therapy, Vol 8, Iss 1, Pp 1-

    molecular mechanisms and diseases

    2023  Volume 16

    Abstract: Abstract Infection susceptibility, poor vaccination efficacy, age-related disease onset, and neoplasms are linked to innate and adaptive immune dysfunction that accompanies aging (known as immunosenescence). During aging, organisms tend to develop a ... ...

    Abstract Abstract Infection susceptibility, poor vaccination efficacy, age-related disease onset, and neoplasms are linked to innate and adaptive immune dysfunction that accompanies aging (known as immunosenescence). During aging, organisms tend to develop a characteristic inflammatory state that expresses high levels of pro-inflammatory markers, termed inflammaging. This chronic inflammation is a typical phenomenon linked to immunosenescence and it is considered the major risk factor for age-related diseases. Thymic involution, naïve/memory cell ratio imbalance, dysregulated metabolism, and epigenetic alterations are striking features of immunosenescence. Disturbed T-cell pools and chronic antigen stimulation mediate premature senescence of immune cells, and senescent immune cells develop a proinflammatory senescence-associated secretory phenotype that exacerbates inflammaging. Although the underlying molecular mechanisms remain to be addressed, it is well documented that senescent T cells and inflammaging might be major driving forces in immunosenescence. Potential counteractive measures will be discussed, including intervention of cellular senescence and metabolic-epigenetic axes to mitigate immunosenescence. In recent years, immunosenescence has attracted increasing attention for its role in tumor development. As a result of the limited participation of elderly patients, the impact of immunosenescence on cancer immunotherapy is unclear. Despite some surprising results from clinical trials and drugs, it is necessary to investigate the role of immunosenescence in cancer and other age-related diseases.
    Keywords Medicine ; R ; Biology (General) ; QH301-705.5
    Subject code 610
    Language English
    Publishing date 2023-05-01T00:00:00Z
    Publisher Nature Publishing Group
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article ; Online: Evaluating the Performance of the Canadian Land Surface Scheme Including Biogeochemical Cycles (CLASSIC) Tailored to the Pan‐Canadian Domain

    Salvatore R. Curasi / Joe R. Melton / Elyn R. Humphreys / Libo Wang / Christian Seiler / Alex J. Cannon / Ed Chan / Bo Qu

    Journal of Advances in Modeling Earth Systems, Vol 15, Iss 4, Pp n/a-n/a (2023)

    2023  

    Abstract: Abstract Canada's boreal forests and tundra ecosystems are responding to unprecedented climate change with implications for the global carbon (C) cycle and global climate. However, our ability to model the response of Canada's terrestrial ecosystems to ... ...

    Abstract Abstract Canada's boreal forests and tundra ecosystems are responding to unprecedented climate change with implications for the global carbon (C) cycle and global climate. However, our ability to model the response of Canada's terrestrial ecosystems to climate change is limited and there has been no comprehensive, process‐based assessment of Canada's terrestrial C cycle. We tailor the Canadian Land Surface Scheme Including Biogeochemical Cycles (CLASSIC) to Canada and evaluate its C cycling performance against independent reference data. We utilize skill scores to assess model performance against reference data alongside benchmark scores that quantify the level of agreement between the reference data sets to aid in interpretation. Our results demonstrate CLASSIC's sensitivity to prescribed vegetation cover. They also show that the addition of five region‐specific Plant functional types (PFTs) improves CLASSIC's skill at simulating the Canadian C cycle. CLASSIC performs well when tailored to Canada, falls within the range of the reference data sets, and meets or exceeds the benchmark scores for most C cycling processes. New region‐specific land cover products, well‐informed PFT parameterizations, and more detailed reference data sets will facilitate improvements to the representation of the terrestrial C cycle in regional and global land surface models. Incorporating a parameterization for boreal disturbance processes and explicitly representing peatlands and permafrost soils will improve CLASSIC's future performance in Canada and other boreal regions. This is an important step toward a comprehensive process‐based assessment of Canada's terrestrial C cycle and evaluating Canada's net C balance under climate change.
    Keywords Canada ; boreal ; Arctic ; CLASSIC ; carbon cycle ; land surface model ; Physical geography ; GB3-5030 ; Oceanography ; GC1-1581
    Subject code 550
    Language English
    Publishing date 2023-04-01T00:00:00Z
    Publisher American Geophysical Union (AGU)
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  10. Article ; Online: Similar seed dispersal systems by local frugivorous birds in native and alien plant species in a coastal seawall forest

    Bin Liu / Guohai Wang / Yuting An / Dandan Xue / Libo Wang / Changhu Lu

    PeerJ, Vol 9, p e

    2021  Volume 11672

    Abstract: Frugivorous birds play an important role in seed dispersal. Alien plant species’ seeds are dispersed by local birds in order to establish populations in new habitats. Alien plant species that produce fruits similar to that of native species have the ... ...

    Abstract Frugivorous birds play an important role in seed dispersal. Alien plant species’ seeds are dispersed by local birds in order to establish populations in new habitats. Alien plant species that produce fruits similar to that of native species have the potential to attract local birds, creating new mutualistic systems that are similar to the local ones. In autumn 2018 and 2019, we studied the seed dispersal systems of an alien plant species, Phytolacca americana, and a native species, Cayratia japonica, in a coastal seawall forest. Both plant species’ fruit, frugivorous bird foraging behaviors, seed germination rates, and seedling microhabitats were examined to determine whether the alien species had a similar seed dispersal system to that of the native species. Our results showed that P. americana and C. japonica had similar fruit type, color, and ripening period. There was a positive correlation between the percentage rate of fruit ripening and the percentage rate of fruit missing for both plant species, indicating that local frugivorous birds have the potential to sufficiently disperse the alien seeds to enable its spread in the coastal seawall forest (simple linear regression, P. americana: β = 0.863 ± 0.017, R2adj = 0.978, P < 0.01; C. japonica: β = 0.787 ± 0.034, R2adj = 0.898, P < 0.01). Eleven bird species consumed the fruits of the alien species or native species during the study period. Similar results were shown across alien and native species in bird foraging behavior (feeding frequency, feeding duration and first stop distance) indicating that a similar seed dispersal relationship had been established between local frugivorous and both plant species. The alien plant had a higher number of fruits carried by birds, suggesting that P. americana had a slightly higher fruit consumption than that of C. japonica (t-test, P < 0.01). Alien plant seedlings grow more abundant in forest gap microhabitat (t-test, P < 0.01). Our results confirmed that bird digestion promotes seed germination success in ...
    Keywords Alien plant species ; Native plant species ; Frugivorous birds ; Seed dispersal system ; Medicine ; R
    Language English
    Publishing date 2021-06-01T00:00:00Z
    Publisher PeerJ Inc.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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